RNA–Protein interactions for RNA: ENST00000450940.5

USP40-207, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 670 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-207ENST00000450940 KIF4AO95239 1232 aa21.27■■□□□ 1
USP40-207ENST00000450940 ZNF568Q3ZCX4 644 aa21.27■■□□□ 1
USP40-207ENST00000450940 MPZL3Q6UWV2 235 aa21.27■■□□□ 1
USP40-207ENST00000450940 TMC5Q6UXY8 1006 aa21.27■■□□□ 1
USP40-207ENST00000450940 ZPBP2Q6X784 338 aa21.27■■□□□ 1
USP40-207ENST00000450940 C15orf39Q6ZRI6 1047 aa21.27■■□□□ 1
USP40-207ENST00000450940 CEP120Q8N960 986 aa21.27■■□□□ 1
USP40-207ENST00000450940 B3GALT6Q96L58 329 aa21.27■■□□□ 1
USP40-207ENST00000450940 CCDC94Q9BW85 323 aaPredicted RBP21.27■■□□□ 1
USP40-207ENST00000450940 TOPORSQ9NS56 1045 aaPredicted RBP21.27■■□□□ 1
USP40-207ENST00000450940 LARSQ9P2J5 1176 aaKnown RBP21.27■■□□□ 1
USP40-207ENST00000450940 DPP7Q9UHL4 492 aa21.27■■□□□ 1
USP40-207ENST00000450940 MORC2Q9Y6X9 1032 aaPredicted RBP21.27■■□□□ 1
USP40-207ENST00000450940 PDCD11Q14690 1871 aaKnown RBP21.26■□□□□ 0.99
USP40-207ENST00000450940 NPHP3-ACAD11A0A0J9YXS1 232 aa21.26■□□□□ 0.99
USP40-207ENST00000450940 SMIM28A0A1B0GU29 152 aa21.26■□□□□ 0.99
USP40-207ENST00000450940 K7ELQ4 463 aaPredicted RBP21.26■□□□□ 0.99
USP40-207ENST00000450940 TOM1L1O75674 476 aa21.26■□□□□ 0.99
USP40-207ENST00000450940 WEE2P0C1S8 567 aa21.26■□□□□ 0.99
USP40-207ENST00000450940 PLCG1P19174 1290 aa21.26■□□□□ 0.99
USP40-207ENST00000450940 SCP2P22307 547 aa21.26■□□□□ 0.99
USP40-207ENST00000450940 ZNF131P52739 623 aa21.26■□□□□ 0.99
USP40-207ENST00000450940 NCKAP1LP55160 1127 aa21.26■□□□□ 0.99
USP40-207ENST00000450940 ZXDAP98168 799 aa21.26■□□□□ 0.99
USP40-207ENST00000450940 CREMQ03060 361 aa21.26■□□□□ 0.99
USP40-207ENST00000450940 ELAVL2Q12926 359 aaKnown RBP21.26■□□□□ 0.99
USP40-207ENST00000450940 STRN3Q13033 797 aa21.26■□□□□ 0.99
USP40-207ENST00000450940 LILRA6Q6PI73 481 aa21.26■□□□□ 0.99
USP40-207ENST00000450940 CYP26C1Q6V0L0 522 aa21.26■□□□□ 0.99
USP40-207ENST00000450940 FEZF2Q8TBJ5 459 aa21.26■□□□□ 0.99
USP40-207ENST00000450940 RIN2Q8WYP3 895 aaPredicted RBP21.26■□□□□ 0.99
USP40-207ENST00000450940 RAD54LQ92698 747 aa21.26■□□□□ 0.99
USP40-207ENST00000450940 UROC1Q96N76 676 aa21.26■□□□□ 0.99
USP40-207ENST00000450940 MTMR6Q9Y217 621 aa21.26■□□□□ 0.99
USP40-207ENST00000450940 USTQ9Y2C2 406 aa21.26■□□□□ 0.99
USP40-207ENST00000450940 H0YCG3 227 aa21.25■□□□□ 0.99
USP40-207ENST00000450940 GLUD1P00367 558 aa21.25■□□□□ 0.99
USP40-207ENST00000450940 KCNE1P15382 129 aa21.25■□□□□ 0.99
USP40-207ENST00000450940 YARSP54577 528 aaKnown RBP21.25■□□□□ 0.99
USP40-207ENST00000450940 KARSQ15046 597 aaKnown RBP21.25■□□□□ 0.99
USP40-207ENST00000450940 RTP2Q5QGT7 225 aa21.25■□□□□ 0.99
USP40-207ENST00000450940 DCLRE1AQ6PJP8 1040 aa21.25■□□□□ 0.99
USP40-207ENST00000450940 CD300LGQ6UXG3 332 aa21.25■□□□□ 0.99
USP40-207ENST00000450940 GPBP1Q86WP2 473 aa21.25■□□□□ 0.99
USP40-207ENST00000450940 PIK3R5Q8WYR1 880 aa21.25■□□□□ 0.99
USP40-207ENST00000450940 SNX21Q969T3 373 aa21.25■□□□□ 0.99
USP40-207ENST00000450940 ZBTB45Q96K62 511 aaPredicted RBP21.25■□□□□ 0.99
USP40-207ENST00000450940 REEP2Q9BRK0 252 aa21.25■□□□□ 0.99
USP40-207ENST00000450940 TCHPQ9BT92 498 aa21.25■□□□□ 0.99
USP40-207ENST00000450940 TTPALQ9BTX7 342 aa21.25■□□□□ 0.99
USP40-207ENST00000450940 PLEKHA4Q9H4M7 779 aa21.25■□□□□ 0.99
USP40-207ENST00000450940 MAN1C1Q9NR34 630 aa21.25■□□□□ 0.99
USP40-207ENST00000450940 FBXO2Q9UK22 296 aaPredicted RBP21.25■□□□□ 0.99
USP40-207ENST00000450940 SRPRBQ9Y5M8 271 aaKnown RBP21.25■□□□□ 0.99
USP40-207ENST00000450940 C2CD4DB7Z1M9 353 aa21.24■□□□□ 0.99
USP40-207ENST00000450940 DDIT3P35638 169 aa21.24■□□□□ 0.99
USP40-207ENST00000450940 MCM6Q14566 821 aa21.24■□□□□ 0.99
USP40-207ENST00000450940 PTPN21Q16825 1174 aa21.24■□□□□ 0.99
USP40-207ENST00000450940 UPP1Q16831 310 aa21.24■□□□□ 0.99
USP40-207ENST00000450940 GLRA4Q5JXX5 417 aa21.24■□□□□ 0.99
USP40-207ENST00000450940 FAM171A1Q5VUB5 890 aa21.24■□□□□ 0.99
USP40-207ENST00000450940 ELMSAN1Q6PJG2 1045 aa21.24■□□□□ 0.99
USP40-207ENST00000450940 TRIM67Q6ZTA4 783 aa21.24■□□□□ 0.99
USP40-207ENST00000450940 HAUS6Q7Z4H7 955 aa21.24■□□□□ 0.99
USP40-207ENST00000450940 BMP8AQ7Z5Y6 402 aa21.24■□□□□ 0.99
USP40-207ENST00000450940 ZBTB33Q86T24 672 aa21.24■□□□□ 0.99
USP40-207ENST00000450940 ZDHHC14Q8IZN3 488 aa21.24■□□□□ 0.99
USP40-207ENST00000450940 LNX1Q8TBB1 728 aaPredicted RBP21.24■□□□□ 0.99
USP40-207ENST00000450940 HASPINQ8TF76 798 aa21.24■□□□□ 0.99
USP40-207ENST00000450940 SNX27Q96L92 541 aa21.24■□□□□ 0.99
USP40-207ENST00000450940 ACAP3Q96P50 834 aa21.24■□□□□ 0.99
USP40-207ENST00000450940 MEFVO15553 781 aaPredicted RBP21.23■□□□□ 0.99
USP40-207ENST00000450940 TGM5O43548 720 aa21.23■□□□□ 0.99
USP40-207ENST00000450940 CLCNKBP51801 687 aa21.23■□□□□ 0.99
USP40-207ENST00000450940 CACNB1Q02641 598 aaPredicted RBP21.23■□□□□ 0.99
USP40-207ENST00000450940 MCL1Q07820 350 aa21.23■□□□□ 0.99
USP40-207ENST00000450940 FAM173BQ6P4H8 233 aa21.23■□□□□ 0.99
USP40-207ENST00000450940 PDXDC1Q6P996 788 aa21.23■□□□□ 0.99
USP40-207ENST00000450940 PRSS55Q6UWB4 352 aaPredicted RBP21.23■□□□□ 0.99
USP40-207ENST00000450940 USP49Q70CQ1 688 aa21.23■□□□□ 0.99
USP40-207ENST00000450940 EPSTI1Q96J88 318 aa21.23■□□□□ 0.99
USP40-207ENST00000450940 ZMAT2Q96NC0 199 aaKnown RBP21.23■□□□□ 0.99
USP40-207ENST00000450940 CLSTN3Q9BQT9 956 aa21.23■□□□□ 0.99
USP40-207ENST00000450940 ZSCAN16Q9H4T2 348 aaPredicted RBP21.23■□□□□ 0.99
USP40-207ENST00000450940 SLC38A7Q9NVC3 462 aa21.23■□□□□ 0.99
USP40-207ENST00000450940 CNTN3Q9P232 1028 aa21.23■□□□□ 0.99
USP40-207ENST00000450940 ZNF318Q5VUA4 2279 aa21.22■□□□□ 0.99
USP40-207ENST00000450940 MYH15Q9Y2K3 1946 aa21.22■□□□□ 0.99
USP40-207ENST00000450940 FGFR3P22607 806 aa21.22■□□□□ 0.99
USP40-207ENST00000450940 IGFBP6P24592 240 aaPredicted RBP21.22■□□□□ 0.99
USP40-207ENST00000450940 MARCKSP29966 332 aaPredicted RBP21.22■□□□□ 0.99
USP40-207ENST00000450940 OSTNP61366 133 aa21.22■□□□□ 0.99
USP40-207ENST00000450940 SOX4Q06945 474 aaPredicted RBP21.22■□□□□ 0.99
USP40-207ENST00000450940 NOLC1Q14978 699 aaKnown RBP eCLIP21.22■□□□□ 0.99
USP40-207ENST00000450940 PDZRN4Q6ZMN7 1036 aaPredicted RBP21.22■□□□□ 0.99
USP40-207ENST00000450940 HFE2Q6ZVN8 426 aa21.22■□□□□ 0.99
USP40-207ENST00000450940 PALB2Q86YC2 1186 aa21.22■□□□□ 0.99
USP40-207ENST00000450940 PLCD3Q8N3E9 789 aa21.22■□□□□ 0.99
USP40-207ENST00000450940 LARP4BQ92615 738 aaKnown RBP21.22■□□□□ 0.99
USP40-207ENST00000450940 DDX27Q96GQ7 796 aaKnown RBP21.22■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 67.7 ms