RNA–Protein interactions for RNA: ENST00000362455.1

RNU4-39P-201, Transcript of RNA, U4 small nuclear 39, pseudogene, humanhuman

BASIC

Gene RNU4-39P, Length 127 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-39P-201ENST00000362455 SNX33Q8WV41 574 aa7.04□□□□□ -1.28
RNU4-39P-201ENST00000362455 PSMD1Q99460 953 aa7.04□□□□□ -1.28
RNU4-39P-201ENST00000362455 MPHOSPH6Q99547 160 aaKnown RBP7.04□□□□□ -1.28
RNU4-39P-201ENST00000362455 CGRRF1Q99675 332 aa7.04□□□□□ -1.28
RNU4-39P-201ENST00000362455 TMEM60Q9H2L4 133 aa7.04□□□□□ -1.28
RNU4-39P-201ENST00000362455 EPB41L4AQ9HCS5 686 aaPredicted RBP7.04□□□□□ -1.28
RNU4-39P-201ENST00000362455 VWA7Q9Y334 891 aa7.04□□□□□ -1.28
RNU4-39P-201ENST00000362455 METP08581 1390 aa7.04□□□□□ -1.28
RNU4-39P-201ENST00000362455 PIK3R4Q99570 1358 aa7.04□□□□□ -1.28
RNU4-39P-201ENST00000362455 SETD1AO15047 1707 aaKnown RBP7.04□□□□□ -1.28
RNU4-39P-201ENST00000362455 RPRD2Q5VT52 1461 aaKnown RBP7.04□□□□□ -1.28
RNU4-39P-201ENST00000362455 SETD5Q9C0A6 1442 aa7.03□□□□□ -1.28
RNU4-39P-201ENST00000362455 ANO9A1A5B4 782 aa7.03□□□□□ -1.28
RNU4-39P-201ENST00000362455 FAM227AF5H4B4 570 aa7.03□□□□□ -1.28
RNU4-39P-201ENST00000362455 DAPK3O43293 454 aa7.03□□□□□ -1.28
RNU4-39P-201ENST00000362455 PHKG2P15735 406 aa7.03□□□□□ -1.28
RNU4-39P-201ENST00000362455 GLDCP23378 1020 aa7.03□□□□□ -1.28
RNU4-39P-201ENST00000362455 HTR1BP28222 390 aa7.03□□□□□ -1.28
RNU4-39P-201ENST00000362455 NEK3P51956 506 aa7.03□□□□□ -1.28
RNU4-39P-201ENST00000362455 ADAM15Q13444 863 aa7.03□□□□□ -1.28
RNU4-39P-201ENST00000362455 SSPNQ14714 243 aa7.03□□□□□ -1.28
RNU4-39P-201ENST00000362455 BRD3Q15059 726 aa7.03□□□□□ -1.28
RNU4-39P-201ENST00000362455 MST1LQ2TV78 715 aa7.03□□□□□ -1.28
RNU4-39P-201ENST00000362455 PPP4R3AQ6IN85 833 aa7.03□□□□□ -1.28
RNU4-39P-201ENST00000362455 CNKSR3Q6P9H4 555 aa7.03□□□□□ -1.28
RNU4-39P-201ENST00000362455 CCDC149Q6ZUS6 474 aa7.03□□□□□ -1.28
RNU4-39P-201ENST00000362455 Q6ZVL8 140 aa7.03□□□□□ -1.28
RNU4-39P-201ENST00000362455 TAS1R1Q7RTX1 841 aa7.03□□□□□ -1.28
RNU4-39P-201ENST00000362455 CLEC14AQ86T13 490 aa7.03□□□□□ -1.28
RNU4-39P-201ENST00000362455 SAPCD2Q86UD0 394 aa7.03□□□□□ -1.28
RNU4-39P-201ENST00000362455 RHOT1Q8IXI2 618 aa7.03□□□□□ -1.28
RNU4-39P-201ENST00000362455 MSL3Q8N5Y2 521 aaKnown RBP7.03□□□□□ -1.28
RNU4-39P-201ENST00000362455 SAMD3Q8N6K7 520 aa7.03□□□□□ -1.28
RNU4-39P-201ENST00000362455 FAM156AQ8NDB6 213 aa7.03□□□□□ -1.28
RNU4-39P-201ENST00000362455 GFM2Q969S9 779 aaKnown RBP7.03□□□□□ -1.28
RNU4-39P-201ENST00000362455 PWWP2AQ96N64 755 aa7.03□□□□□ -1.28
RNU4-39P-201ENST00000362455 UIMC1Q96RL1 719 aa7.03□□□□□ -1.28
RNU4-39P-201ENST00000362455 LRFN3Q9BTN0 628 aa7.03□□□□□ -1.28
RNU4-39P-201ENST00000362455 B3GNT5Q9BYG0 378 aa7.03□□□□□ -1.28
RNU4-39P-201ENST00000362455 PCDHB1Q9Y5F3 818 aa7.03□□□□□ -1.28
RNU4-39P-201ENST00000362455 CFAP65Q6ZU64 1925 aaKnown RBP7.03□□□□□ -1.28
RNU4-39P-201ENST00000362455 DIP2AQ14689 1571 aa7.03□□□□□ -1.28
RNU4-39P-201ENST00000362455 MST1RQ04912 1400 aa7.02□□□□□ -1.29
RNU4-39P-201ENST00000362455 AHDC1Q5TGY3 1603 aaPredicted RBP7.02□□□□□ -1.29
RNU4-39P-201ENST00000362455 PHF2O75151 1096 aa7.02□□□□□ -1.29
RNU4-39P-201ENST00000362455 ENDOD1O94919 500 aa7.02□□□□□ -1.29
RNU4-39P-201ENST00000362455 HRGP04196 525 aa7.02□□□□□ -1.29
RNU4-39P-201ENST00000362455 PI3P19957 117 aa7.02□□□□□ -1.29
RNU4-39P-201ENST00000362455 ECHS1P30084 290 aa7.02□□□□□ -1.29
RNU4-39P-201ENST00000362455 SLC6A9P48067 706 aa7.02□□□□□ -1.29
RNU4-39P-201ENST00000362455 MEOX1P50221 254 aa7.02□□□□□ -1.29
RNU4-39P-201ENST00000362455 MAP2K6P52564 334 aa7.02□□□□□ -1.29
RNU4-39P-201ENST00000362455 SESN2P58004 480 aaPredicted RBP7.02□□□□□ -1.29
RNU4-39P-201ENST00000362455 PICALMQ13492 652 aa7.02□□□□□ -1.29
RNU4-39P-201ENST00000362455 PCOLCEQ15113 449 aa7.02□□□□□ -1.29
RNU4-39P-201ENST00000362455 VWA3BQ502W6 1294 aa7.02□□□□□ -1.29
RNU4-39P-201ENST00000362455 C19orf54Q5BKX5 351 aa7.02□□□□□ -1.29
RNU4-39P-201ENST00000362455 GJC2Q5T442 439 aaPredicted RBP7.02□□□□□ -1.29
RNU4-39P-201ENST00000362455 Q6ZUG5 572 aa7.02□□□□□ -1.29
RNU4-39P-201ENST00000362455 TTC7BQ86TV6 843 aa7.02□□□□□ -1.29
RNU4-39P-201ENST00000362455 KIAA0319LQ8IZA0 1049 aa7.02□□□□□ -1.29
RNU4-39P-201ENST00000362455 NSUN6Q8TEA1 469 aaKnown RBP7.02□□□□□ -1.29
RNU4-39P-201ENST00000362455 ZNF526Q8TF50 670 aaPredicted RBP7.02□□□□□ -1.29
RNU4-39P-201ENST00000362455 RAB24Q969Q5 203 aa7.02□□□□□ -1.29
RNU4-39P-201ENST00000362455 RGMAQ96B86 450 aa7.02□□□□□ -1.29
RNU4-39P-201ENST00000362455 YTHDC1Q96MU7 727 aaKnown RBP7.02□□□□□ -1.29
RNU4-39P-201ENST00000362455 SPATA25Q9BR10 227 aa7.02□□□□□ -1.29
RNU4-39P-201ENST00000362455 KATNBL1Q9H079 304 aa7.02□□□□□ -1.29
RNU4-39P-201ENST00000362455 KMT5AQ9NQR1 393 aa7.02□□□□□ -1.29
RNU4-39P-201ENST00000362455 TLR9Q9NR96 1032 aa7.02□□□□□ -1.29
RNU4-39P-201ENST00000362455 NIPSNAP3AQ9UFN0 247 aaPredicted RBP7.02□□□□□ -1.29
RNU4-39P-201ENST00000362455 PNPLA6Q8IY17 1366 aa7.02□□□□□ -1.29
RNU4-39P-201ENST00000362455 KDM5AP29375 1690 aaKnown RBP7.02□□□□□ -1.29
RNU4-39P-201ENST00000362455 RGS12O14924 1447 aa7.01□□□□□ -1.29
RNU4-39P-201ENST00000362455 TMEM131LA2VDJ0 1609 aa7.01□□□□□ -1.29
RNU4-39P-201ENST00000362455 CDK12Q9NYV4 1490 aaPredicted RBP7.01□□□□□ -1.29
RNU4-39P-201ENST00000362455 LOC100996750A0A140TA64 210 aa7.01□□□□□ -1.29
RNU4-39P-201ENST00000362455 PMM2O15305 246 aa7.01□□□□□ -1.29
RNU4-39P-201ENST00000362455 FTLP02792 175 aaPredicted RBP7.01□□□□□ -1.29
RNU4-39P-201ENST00000362455 RPLP2P05387 115 aaKnown RBP7.01□□□□□ -1.29
RNU4-39P-201ENST00000362455 MRE11P49959 708 aa7.01□□□□□ -1.29
RNU4-39P-201ENST00000362455 RBM6P78332 1123 aaKnown RBP7.01□□□□□ -1.29
RNU4-39P-201ENST00000362455 NPNTQ6UXI9 565 aa7.01□□□□□ -1.29
RNU4-39P-201ENST00000362455 SYDE1Q6ZW31 735 aaPredicted RBP7.01□□□□□ -1.29
RNU4-39P-201ENST00000362455 REXO1L1PQ8IX06 675 aa7.01□□□□□ -1.29
RNU4-39P-201ENST00000362455 DRC7Q8IY82 874 aa7.01□□□□□ -1.29
RNU4-39P-201ENST00000362455 LRRC59Q96AG4 307 aaKnown RBP7.01□□□□□ -1.29
RNU4-39P-201ENST00000362455 KRTAP4-6Q9BYQ5 205 aa7.01□□□□□ -1.29
RNU4-39P-201ENST00000362455 KIAA1683Q9H0B3 1180 aa7.01□□□□□ -1.29
RNU4-39P-201ENST00000362455 TDP1Q9NUW8 608 aa7.01□□□□□ -1.29
RNU4-39P-201ENST00000362455 NTMQ9P121 344 aa7.01□□□□□ -1.29
RNU4-39P-201ENST00000362455 FAM184BQ9ULE4 1060 aa7.01□□□□□ -1.29
RNU4-39P-201ENST00000362455 SIK3Q9Y2K2 1263 aa7.01□□□□□ -1.29
RNU4-39P-201ENST00000362455 STXBP5LQ9Y2K9 1186 aa7.01□□□□□ -1.29
RNU4-39P-201ENST00000362455 RIPOR2Q9Y4F9 1068 aa7.01□□□□□ -1.29
RNU4-39P-201ENST00000362455 NR2E3Q9Y5X4 410 aa7.01□□□□□ -1.29
RNU4-39P-201ENST00000362455 PHLPP1O60346 1717 aa7.01□□□□□ -1.29
RNU4-39P-201ENST00000362455 NUP155O75694 1391 aa7□□□□□ -1.29
RNU4-39P-201ENST00000362455 C2orf78A6NCI8 922 aa7□□□□□ -1.29
RNU4-39P-201ENST00000362455 LRRC14BA6NHZ5 514 aa7□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms