RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 FAM167AQ96KS9 214 aa12.17□□□□□ -0.46
VPS39-201ENST00000318006 EIF2AK1Q9BQI3 630 aaKnown RBP12.17□□□□□ -0.46
VPS39-201ENST00000318006 ROPN1BQ9BZX4 212 aaPredicted RBP12.17□□□□□ -0.46
VPS39-201ENST00000318006 SNX25Q9H3E2 840 aa12.17□□□□□ -0.46
VPS39-201ENST00000318006 ROPN1Q9HAT0 212 aaPredicted RBP12.17□□□□□ -0.46
VPS39-201ENST00000318006 STRIP2Q9ULQ0 834 aa12.17□□□□□ -0.46
VPS39-201ENST00000318006 HPS5Q9UPZ3 1129 aa12.17□□□□□ -0.46
VPS39-201ENST00000318006 FAM47DPA6NHR8 397 aa12.17□□□□□ -0.46
VPS39-201ENST00000318006 LRRIQ3A6PVS8 624 aaPredicted RBP12.17□□□□□ -0.46
VPS39-201ENST00000318006 E7ENQ6 273 aa12.17□□□□□ -0.46
VPS39-201ENST00000318006 CHEK2O96017 543 aa12.17□□□□□ -0.46
VPS39-201ENST00000318006 TAC1P20366 129 aa12.17□□□□□ -0.46
VPS39-201ENST00000318006 KRT17Q04695 432 aa12.17□□□□□ -0.46
VPS39-201ENST00000318006 GPS1Q13098 491 aa12.17□□□□□ -0.46
VPS39-201ENST00000318006 SLC10A4Q96EP9 437 aa12.17□□□□□ -0.46
VPS39-201ENST00000318006 TRIM51Q9BSJ1 452 aa12.17□□□□□ -0.46
VPS39-201ENST00000318006 NUP85Q9BW27 656 aa12.17□□□□□ -0.46
VPS39-201ENST00000318006 ASCC2Q9H1I8 757 aaPredicted RBP12.17□□□□□ -0.46
VPS39-201ENST00000318006 NDUFA13Q9P0J0 144 aa12.17□□□□□ -0.46
VPS39-201ENST00000318006 PNMA3Q9UL41 463 aa12.17□□□□□ -0.46
VPS39-201ENST00000318006 PDS5AQ29RF7 1337 aaKnown RBP12.17□□□□□ -0.46
VPS39-201ENST00000318006 SPATA31A6Q5VVP1 1343 aa12.17□□□□□ -0.46
VPS39-201ENST00000318006 SLC16A4O15374 487 aa12.17□□□□□ -0.46
VPS39-201ENST00000318006 E2F6O75461 281 aa12.17□□□□□ -0.46
VPS39-201ENST00000318006 SYF2O95926 243 aaKnown RBP12.17□□□□□ -0.46
VPS39-201ENST00000318006 ITIH4Q14624 930 aa12.17□□□□□ -0.46
VPS39-201ENST00000318006 LRRC36Q1X8D7 754 aa12.17□□□□□ -0.46
VPS39-201ENST00000318006 SPOUT1Q5T280 376 aaKnown RBP12.17□□□□□ -0.46
VPS39-201ENST00000318006 PACS2Q86VP3 889 aa12.17□□□□□ -0.46
VPS39-201ENST00000318006 GIMAP8Q8ND71 665 aaPredicted RBP12.17□□□□□ -0.46
VPS39-201ENST00000318006 LXNQ9BS40 222 aa12.17□□□□□ -0.46
VPS39-201ENST00000318006 FTLP02792 175 aaPredicted RBP12.17□□□□□ -0.46
VPS39-201ENST00000318006 GYPCP04921 128 aa12.17□□□□□ -0.46
VPS39-201ENST00000318006 MAP4P27816 1152 aaKnown RBP12.17□□□□□ -0.46
VPS39-201ENST00000318006 PAPOLAP51003 745 aaKnown RBP12.17□□□□□ -0.46
VPS39-201ENST00000318006 ARHGDIAP52565 204 aa12.17□□□□□ -0.46
VPS39-201ENST00000318006 TFDP2Q14188 446 aa12.17□□□□□ -0.46
VPS39-201ENST00000318006 TMTC4Q5T4D3 741 aa12.17□□□□□ -0.46
VPS39-201ENST00000318006 HHIPL2Q6UWX4 724 aa12.17□□□□□ -0.46
VPS39-201ENST00000318006 SYDE1Q6ZW31 735 aaPredicted RBP12.17□□□□□ -0.46
VPS39-201ENST00000318006 NPHS2Q9NP85 383 aa12.17□□□□□ -0.46
VPS39-201ENST00000318006 PAPOLBQ9NRJ5 636 aaKnown RBP12.17□□□□□ -0.46
VPS39-201ENST00000318006 TMEM120BA0PK00 339 aa12.16□□□□□ -0.46
VPS39-201ENST00000318006 CCDC159P0C7I6 412 aa12.16□□□□□ -0.46
VPS39-201ENST00000318006 GNAT1P11488 350 aa12.16□□□□□ -0.46
VPS39-201ENST00000318006 PSMA2P25787 234 aa12.16□□□□□ -0.46
VPS39-201ENST00000318006 DPYDQ12882 1025 aa12.16□□□□□ -0.46
VPS39-201ENST00000318006 DRAP1Q14919 205 aaPredicted RBP12.16□□□□□ -0.46
VPS39-201ENST00000318006 ANKRD40Q6AI12 368 aa12.16□□□□□ -0.46
VPS39-201ENST00000318006 LDHDQ86WU2 507 aa12.16□□□□□ -0.46
VPS39-201ENST00000318006 C7orf31Q8N865 590 aa12.16□□□□□ -0.46
VPS39-201ENST00000318006 BEGAINQ9BUH8 593 aa12.16□□□□□ -0.46
VPS39-201ENST00000318006 VPS11Q9H270 941 aa12.16□□□□□ -0.46
VPS39-201ENST00000318006 CCDC134Q9H6E4 229 aa12.16□□□□□ -0.46
VPS39-201ENST00000318006 ZWILCHQ9H900 591 aa12.16□□□□□ -0.46
VPS39-201ENST00000318006 UBN1Q9NPG3 1134 aa12.16□□□□□ -0.46
VPS39-201ENST00000318006 NYAP2Q9P242 653 aa12.16□□□□□ -0.46
VPS39-201ENST00000318006 DBR1Q9UK59 544 aaKnown RBP12.16□□□□□ -0.46
VPS39-201ENST00000318006 PPME1Q9Y570 386 aa12.16□□□□□ -0.46
VPS39-201ENST00000318006 CLDN3O15551 220 aa12.16□□□□□ -0.46
VPS39-201ENST00000318006 KRT8P05787 483 aa12.16□□□□□ -0.46
VPS39-201ENST00000318006 ANXA13P27216 316 aa12.16□□□□□ -0.46
VPS39-201ENST00000318006 CHRNA5P30532 468 aa12.16□□□□□ -0.46
VPS39-201ENST00000318006 EFTUD2Q15029 972 aaKnown RBP eCLIP12.16□□□□□ -0.461e-5■□□□□ 8.3
VPS39-201ENST00000318006 TRIP10Q15642 601 aa12.16□□□□□ -0.46
VPS39-201ENST00000318006 LONRF1Q17RB8 773 aa12.16□□□□□ -0.46
VPS39-201ENST00000318006 MAP3K14Q99558 947 aa12.16□□□□□ -0.46
VPS39-201ENST00000318006 TSSK1BQ9BXA7 367 aa12.16□□□□□ -0.46
VPS39-201ENST00000318006 SLC38A10Q9HBR0 1119 aa12.16□□□□□ -0.46
VPS39-201ENST00000318006 SALL3Q9BXA9 1300 aa12.16□□□□□ -0.46
VPS39-201ENST00000318006 DENND3A2RUS2 1198 aa12.16□□□□□ -0.46
VPS39-201ENST00000318006 PHF2O75151 1096 aa12.16□□□□□ -0.46
VPS39-201ENST00000318006 ABL1P00519 1130 aa12.16□□□□□ -0.46
VPS39-201ENST00000318006 ERFP50548 548 aa12.16□□□□□ -0.46
VPS39-201ENST00000318006 PSMC5P62195 406 aa12.16□□□□□ -0.46
VPS39-201ENST00000318006 EPHA7Q15375 998 aa12.16□□□□□ -0.46
VPS39-201ENST00000318006 SCARA5Q6ZMJ2 495 aa12.16□□□□□ -0.46
VPS39-201ENST00000318006 USP49Q70CQ1 688 aa12.16□□□□□ -0.46
VPS39-201ENST00000318006 ERICH1Q86X53 443 aa12.16□□□□□ -0.46
VPS39-201ENST00000318006 GLYCTKQ8IVS8 523 aa12.16□□□□□ -0.46
VPS39-201ENST00000318006 THNSL1Q8IYQ7 743 aa12.16□□□□□ -0.46
VPS39-201ENST00000318006 SNRNP27Q8WVK2 155 aaKnown RBP12.16□□□□□ -0.46
VPS39-201ENST00000318006 C1orf54Q8WWF1 131 aa12.16□□□□□ -0.46
VPS39-201ENST00000318006 RAPGEF5Q92565 580 aa12.16□□□□□ -0.46
VPS39-201ENST00000318006 LBHD1Q9BQE6 289 aaPredicted RBP12.16□□□□□ -0.46
VPS39-201ENST00000318006 MEGF6O75095 1541 aa12.16□□□□□ -0.46
VPS39-201ENST00000318006 EYA4O95677 639 aa12.16□□□□□ -0.46
VPS39-201ENST00000318006 KRT75O95678 551 aa12.16□□□□□ -0.46
VPS39-201ENST00000318006 OR6B2Q6IFH4 312 aa12.16□□□□□ -0.46
VPS39-201ENST00000318006 CDC42EP5Q6NZY7 148 aa12.16□□□□□ -0.46
VPS39-201ENST00000318006 INTS5Q6P9B9 1019 aaKnown RBP12.16□□□□□ -0.46
VPS39-201ENST00000318006 MYLK4Q86YV6 388 aaPredicted RBP12.16□□□□□ -0.46
VPS39-201ENST00000318006 APOBEC3FQ8IUX4 373 aaKnown RBP12.16□□□□□ -0.46
VPS39-201ENST00000318006 ADSSL1Q8N142 457 aa12.16□□□□□ -0.46
VPS39-201ENST00000318006 RNF25Q96BH1 459 aaPredicted RBP12.16□□□□□ -0.46
VPS39-201ENST00000318006 VPS39Q96JC1 886 aa12.16□□□□□ -0.46
VPS39-201ENST00000318006 KCNK16Q96T55 309 aa12.16□□□□□ -0.46
VPS39-201ENST00000318006 CNTNAP5Q8WYK1 1306 aa12.15□□□□□ -0.46
VPS39-201ENST00000318006 NDUFB10O96000 172 aa12.15□□□□□ -0.46
VPS39-201ENST00000318006 MAPK6Q16659 721 aa12.15□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms