RNA–Protein interactions for RNA: YFL008W

SMC1, Transcript of Subunit of the multiprotein cohesin complex, yeast

Gene SMC1, Length 3,678 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SMC1	YFL008W	YNR073C	P0CX09	502 aa		0.89	□□□□□ -2.27
SMC1	YFL008W	SRV2	P17555	526 aa	Known RBP	0.89	□□□□□ -2.27
SMC1	YFL008W	CDC42	P19073	191 aa		0.89	□□□□□ -2.27
SMC1	YFL008W	SAR1	P20606	190 aa	Known RBP	0.89	□□□□□ -2.27
SMC1	YFL008W	CAM1	P29547	415 aa	Known RBP	0.89	□□□□□ -2.27
SMC1	YFL008W	TFC1	P32367	649 aa		0.89	□□□□□ -2.27
SMC1	YFL008W	ASF2	P32448	525 aa	Predicted RBP	0.89	□□□□□ -2.27
SMC1	YFL008W	DPH2	P32461	534 aa		0.89	□□□□□ -2.27
SMC1	YFL008W	HYM1	P32464	399 aa		0.89	□□□□□ -2.27
SMC1	YFL008W	BUD2	P33314	1104 aa		0.89	□□□□□ -2.27
SMC1	YFL008W	SRB2	P34162	210 aa		0.89	□□□□□ -2.27
SMC1	YFL008W	AST1	P35183	429 aa		0.89	□□□□□ -2.27
SMC1	YFL008W	GOS1	P38736	223 aa		0.89	□□□□□ -2.27
SMC1	YFL008W	YHR182W	P38870	785 aa		0.89	□□□□□ -2.27
SMC1	YFL008W	LSM4	P40070	187 aa	Known RBP	0.89	□□□□□ -2.27
SMC1	YFL008W	YMR134W	P40207	237 aa		0.89	□□□□□ -2.27
SMC1	YFL008W	SEC28	P40509	296 aa	Known RBP	0.89	□□□□□ -2.27
SMC1	YFL008W	GLC8	P41818	229 aa		0.89	□□□□□ -2.27
SMC1	YFL008W	PFS2	P42841	465 aa	Known RBP	0.89	□□□□□ -2.27
SMC1	YFL008W	NBP1	P52919	319 aa	Predicted RBP	0.89	□□□□□ -2.27
SMC1	YFL008W	CAB4	P53332	305 aa		0.89	□□□□□ -2.27
SMC1	YFL008W	RCF2	P53721	224 aa		0.89	□□□□□ -2.27
SMC1	YFL008W	ZRG17	P53735	605 aa		0.89	□□□□□ -2.27
SMC1	YFL008W	SAE3	P89114	91 aa		0.89	□□□□□ -2.27
SMC1	YFL008W	LAP3	Q01532	483 aa	Known RBP RIP-Chip data	0.89	□□□□□ -2.27	not detected
SMC1	YFL008W	RPL21A	Q02753	160 aa	Known RBP	0.89	□□□□□ -2.27
SMC1	YFL008W	PET117	Q02771	107 aa		0.89	□□□□□ -2.27
SMC1	YFL008W	MRPS17	Q03246	237 aa	Predicted RBP	0.89	□□□□□ -2.27
SMC1	YFL008W	DXO1	Q06349	442 aa		0.89	□□□□□ -2.27
SMC1	YFL008W	MUM3	Q08750	479 aa		0.89	□□□□□ -2.27
SMC1	YFL008W	YLR046C	Q12253	270 aa		0.89	□□□□□ -2.27
SMC1	YFL008W	RPL21B	Q12672	160 aa	Known RBP	0.89	□□□□□ -2.27
SMC1	YFL008W	YHR213W-A	Q8TGT4	77 aa		0.89	□□□□□ -2.27
SMC1	YFL008W	MED11	Q99278	115 aa		0.89	□□□□□ -2.27
SMC1	YFL008W	HEM4	P06174	275 aa		0.88	□□□□□ -2.27
SMC1	YFL008W	RPL23A	P0CX41	137 aa	Known RBP	0.88	□□□□□ -2.27
SMC1	YFL008W	RPL23B	P0CX42	137 aa	Known RBP	0.88	□□□□□ -2.27
SMC1	YFL008W	RPS18A	P0CX55	146 aa	Known RBP	0.88	□□□□□ -2.27
SMC1	YFL008W	RPS18B	P0CX56	146 aa	Predicted RBP	0.88	□□□□□ -2.27
SMC1	YFL008W	MATALPHA2	P0CY08	210 aa		0.88	□□□□□ -2.27
SMC1	YFL008W	HMLALPHA2	P0CY09	210 aa		0.88	□□□□□ -2.27
SMC1	YFL008W	RPL4A	P10664	362 aa	Known RBP	0.88	□□□□□ -2.27
SMC1	YFL008W	NHP6A	P11632	93 aa	Known RBP	0.88	□□□□□ -2.27
SMC1	YFL008W	MAG1	P22134	296 aa	Known RBP	0.88	□□□□□ -2.27
SMC1	YFL008W	DCC1	P25559	380 aa		0.88	□□□□□ -2.27
SMC1	YFL008W	RME1	P32338	300 aa	Known RBP	0.88	□□□□□ -2.27
SMC1	YFL008W	MKK1	P32490	508 aa		0.88	□□□□□ -2.27
SMC1	YFL008W	SRB6	P32570	121 aa		0.88	□□□□□ -2.27
SMC1	YFL008W	MRPS5	P33759	307 aa		0.88	□□□□□ -2.27
SMC1	YFL008W	SRP102	P36057	244 aa	Predicted RBP	0.88	□□□□□ -2.27
SMC1	YFL008W	MRPL17	P36528	281 aa		0.88	□□□□□ -2.27
SMC1	YFL008W	ECM13	P38195	257 aa		0.88	□□□□□ -2.27
SMC1	YFL008W	POP4	P38336	279 aa		0.88	□□□□□ -2.27
SMC1	YFL008W	PFS1	P38872	237 aa		0.88	□□□□□ -2.27
SMC1	YFL008W	MNL1	P38888	796 aa		0.88	□□□□□ -2.27
SMC1	YFL008W	YMR144W	P40214	342 aa	Known RBP	0.88	□□□□□ -2.27
SMC1	YFL008W	PGD1	P40356	397 aa		0.88	□□□□□ -2.27
SMC1	YFL008W	RPE1	P46969	238 aa		0.88	□□□□□ -2.27
SMC1	YFL008W	RPL4B	P49626	362 aa	Known RBP	0.88	□□□□□ -2.27
SMC1	YFL008W	MPC1	P53157	130 aa	Known RBP	0.88	□□□□□ -2.27
SMC1	YFL008W	YGR016W	P53209	190 aa		0.88	□□□□□ -2.27
SMC1	YFL008W	SED5	Q01590	340 aa		0.88	□□□□□ -2.27
SMC1	YFL008W	SPP2	Q02521	185 aa		0.88	□□□□□ -2.27
SMC1	YFL008W	YPL107W	Q02873	248 aa		0.88	□□□□□ -2.27
SMC1	YFL008W	YDC1	Q02896	317 aa		0.88	□□□□□ -2.27
SMC1	YFL008W	PEX25	Q02969	394 aa		0.88	□□□□□ -2.27
SMC1	YFL008W	PRM15	Q03262	622 aa		0.88	□□□□□ -2.27
SMC1	YFL008W	MSC3	Q05812	728 aa		0.88	□□□□□ -2.27
SMC1	YFL008W	GMC2	Q06201	188 aa		0.88	□□□□□ -2.27
SMC1	YFL008W	YNG1	Q08465	219 aa		0.88	□□□□□ -2.27
SMC1	YFL008W	CSM4	Q08955	156 aa		0.88	□□□□□ -2.27
SMC1	YFL008W	APC9	Q12107	265 aa		0.88	□□□□□ -2.27
SMC1	YFL008W	TY3A-G	Q12173	290 aa		0.88	□□□□□ -2.27
SMC1	YFL008W	DCP1	Q12517	231 aa	Predicted RBP	0.88	□□□□□ -2.27
SMC1	YFL008W	RGS2	Q99188	309 aa		0.88	□□□□□ -2.27
SMC1	YFL008W	TY3A-I	Q99219	290 aa		0.88	□□□□□ -2.27
SMC1	YFL008W	AI5_BETA	Q9ZZX0	354 aa		0.88	□□□□□ -2.27
SMC1	YFL008W	CYR1	P08678	2026 aa	Known RBP	0.88	□□□□□ -2.27
SMC1	YFL008W	INH1	P01097	85 aa		0.88	□□□□□ -2.27
SMC1	YFL008W	POX1	P13711	748 aa		0.88	□□□□□ -2.27
SMC1	YFL008W	PUT4	P15380	627 aa		0.88	□□□□□ -2.27
SMC1	YFL008W	FRS2	P15625	503 aa	Known RBP	0.88	□□□□□ -2.27
SMC1	YFL008W	MRPL44	P19956	98 aa		0.88	□□□□□ -2.27
SMC1	YFL008W	ATG22	P25568	528 aa		0.88	□□□□□ -2.27
SMC1	YFL008W	SEC17	P32602	292 aa		0.88	□□□□□ -2.27
SMC1	YFL008W	SKG6	P32900	734 aa	Predicted RBP	0.88	□□□□□ -2.27
SMC1	YFL008W	RCN1	P36054	211 aa		0.88	□□□□□ -2.27
SMC1	YFL008W	UTP30	P36144	274 aa	Known RBP	0.88	□□□□□ -2.27
SMC1	YFL008W	YBR063C	P38083	404 aa		0.88	□□□□□ -2.27
SMC1	YFL008W	YPT31	P38555	223 aa	Known RBP	0.88	□□□□□ -2.27
SMC1	YFL008W	COX14	P39103	70 aa		0.88	□□□□□ -2.27
SMC1	YFL008W	YER034W	P40022	185 aa	Known RBP	0.88	□□□□□ -2.27
SMC1	YFL008W	COG3	P40094	801 aa		0.88	□□□□□ -2.27
SMC1	YFL008W	GTT1	P40582	234 aa		0.88	□□□□□ -2.27
SMC1	YFL008W	CDC40	P40968	455 aa	Predicted RBP	0.88	□□□□□ -2.27
SMC1	YFL008W	NSE4	P43124	402 aa		0.88	□□□□□ -2.27
SMC1	YFL008W	GTO1	P48239	356 aa		0.88	□□□□□ -2.27
SMC1	YFL008W	ARO8	P53090	500 aa	Known RBP	0.88	□□□□□ -2.27
SMC1	YFL008W	LST7	P53237	242 aa		0.88	□□□□□ -2.27
SMC1	YFL008W	YNL134C	P53912	376 aa	Known RBP	0.88	□□□□□ -2.27

Retrieved 100 of 5,963 RNA–protein pairs in 19.7 ms