RNA–Protein interactions for RNA: ENST00000548436.5

PRPF40B-208, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 2

Gene PRPF40B, Length 2,059 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-208ENST00000548436 SIP14410 1827 aa19.94■□□□□ 0.78
PRPF40B-208ENST00000548436 MYPNQ86TC9 1320 aa19.94■□□□□ 0.78
PRPF40B-208ENST00000548436 SHOX2O60902 331 aaPredicted RBP19.94■□□□□ 0.78
PRPF40B-208ENST00000548436 USP2O75604 605 aaPredicted RBP19.94■□□□□ 0.78
PRPF40B-208ENST00000548436 COPB2P35606 906 aa19.94■□□□□ 0.78
PRPF40B-208ENST00000548436 EMC2Q15006 297 aa19.94■□□□□ 0.78
PRPF40B-208ENST00000548436 STXBP2Q15833 593 aa19.94■□□□□ 0.78
PRPF40B-208ENST00000548436 SH3D19Q5HYK7 790 aa19.94■□□□□ 0.78
PRPF40B-208ENST00000548436 DLK2Q6UY11 383 aa19.94■□□□□ 0.78
PRPF40B-208ENST00000548436 SEC14L1Q92503 715 aa19.94■□□□□ 0.78
PRPF40B-208ENST00000548436 TMEM143Q96AN5 459 aa19.94■□□□□ 0.78
PRPF40B-208ENST00000548436 MAFBQ9Y5Q3 323 aaPredicted RBP19.94■□□□□ 0.78
PRPF40B-208ENST00000548436 SYNGAP1Q96PV0 1343 aa19.94■□□□□ 0.78
PRPF40B-208ENST00000548436 MTA2O94776 668 aa19.93■□□□□ 0.78
PRPF40B-208ENST00000548436 ATG7O95352 703 aa19.93■□□□□ 0.78
PRPF40B-208ENST00000548436 COMTP21964 271 aa19.93■□□□□ 0.78
PRPF40B-208ENST00000548436 PTENP60484 403 aa19.93■□□□□ 0.78
PRPF40B-208ENST00000548436 CDR2Q01850 454 aa19.93■□□□□ 0.78
PRPF40B-208ENST00000548436 MESDQ14696 234 aa19.93■□□□□ 0.78
PRPF40B-208ENST00000548436 TREML2Q5T2D2 321 aa19.93■□□□□ 0.78
PRPF40B-208ENST00000548436 FOXR1Q6PIV2 292 aa19.93■□□□□ 0.78
PRPF40B-208ENST00000548436 USP37Q86T82 979 aa19.93■□□□□ 0.78
PRPF40B-208ENST00000548436 CD302Q8IX05 232 aa19.93■□□□□ 0.78
PRPF40B-208ENST00000548436 PPP2R3BQ9Y5P8 575 aa19.93■□□□□ 0.78
PRPF40B-208ENST00000548436 CALCAP01258 141 aa19.93■□□□□ 0.78
PRPF40B-208ENST00000548436 ICAM3P32942 547 aa19.93■□□□□ 0.78
PRPF40B-208ENST00000548436 FLT3P36888 993 aa19.93■□□□□ 0.78
PRPF40B-208ENST00000548436 PDE6CP51160 858 aa19.93■□□□□ 0.78
PRPF40B-208ENST00000548436 POLGP54098 1239 aaPredicted RBP19.93■□□□□ 0.78
PRPF40B-208ENST00000548436 WNT7BP56706 349 aa19.93■□□□□ 0.78
PRPF40B-208ENST00000548436 C15orf39Q6ZRI6 1047 aa19.93■□□□□ 0.78
PRPF40B-208ENST00000548436 SEPT14Q6ZU15 432 aa19.93■□□□□ 0.78
PRPF40B-208ENST00000548436 DNERQ8NFT8 737 aa19.93■□□□□ 0.78
PRPF40B-208ENST00000548436 BTBD6Q96KE9 485 aa19.93■□□□□ 0.78
PRPF40B-208ENST00000548436 ZNF302Q9NR11 478 aa19.93■□□□□ 0.78
PRPF40B-208ENST00000548436 MIF4GDA9UHW6 222 aaKnown RBP19.92■□□□□ 0.78
PRPF40B-208ENST00000548436 GRIN3BO60391 1043 aa19.92■□□□□ 0.78
PRPF40B-208ENST00000548436 CYP1A2P05177 515 aa19.92■□□□□ 0.78
PRPF40B-208ENST00000548436 LIG4P49917 911 aa19.92■□□□□ 0.78
PRPF40B-208ENST00000548436 ENPEPQ07075 957 aa19.92■□□□□ 0.78
PRPF40B-208ENST00000548436 UAP1Q16222 522 aaPredicted RBP19.92■□□□□ 0.78
PRPF40B-208ENST00000548436 LMBRD2Q68DH5 695 aaPredicted RBP19.92■□□□□ 0.78
PRPF40B-208ENST00000548436 KCTD16Q68DU8 428 aa19.92■□□□□ 0.78
PRPF40B-208ENST00000548436 CPNE8Q86YQ8 564 aa19.92■□□□□ 0.78
PRPF40B-208ENST00000548436 ANKRD35Q8N283 1001 aa19.92■□□□□ 0.78
PRPF40B-208ENST00000548436 SH2D3CQ8N5H7 860 aa19.92■□□□□ 0.78
PRPF40B-208ENST00000548436 NLGN2Q8NFZ4 835 aa19.92■□□□□ 0.78
PRPF40B-208ENST00000548436 ASAP3Q8TDY4 903 aa19.92■□□□□ 0.78
PRPF40B-208ENST00000548436 RPS6KC1Q96S38 1066 aa19.92■□□□□ 0.78
PRPF40B-208ENST00000548436 NAP1L3Q99457 506 aaPredicted RBP19.92■□□□□ 0.78
PRPF40B-208ENST00000548436 ZSWIM1Q9BR11 485 aa19.92■□□□□ 0.78
PRPF40B-208ENST00000548436 TRIM51Q9BSJ1 452 aa19.92■□□□□ 0.78
PRPF40B-208ENST00000548436 NUP85Q9BW27 656 aa19.92■□□□□ 0.78
PRPF40B-208ENST00000548436 MAF1Q9H063 256 aa19.92■□□□□ 0.78
PRPF40B-208ENST00000548436 SPON1Q9HCB6 807 aa19.92■□□□□ 0.78
PRPF40B-208ENST00000548436 TRPC6Q9Y210 931 aa19.92■□□□□ 0.78
PRPF40B-208ENST00000548436 PLAAQ9Y263 795 aa19.92■□□□□ 0.78
PRPF40B-208ENST00000548436 SNCAIPQ9Y6H5 919 aa19.92■□□□□ 0.78
PRPF40B-208ENST00000548436 DICER1Q9UPY3 1922 aaKnown RBP19.92■□□□□ 0.78
PRPF40B-208ENST00000548436 EXTL3O43909 919 aa19.91■□□□□ 0.78
PRPF40B-208ENST00000548436 OATP04181 439 aa19.91■□□□□ 0.78
PRPF40B-208ENST00000548436 HSD17B3P37058 310 aa19.91■□□□□ 0.78
PRPF40B-208ENST00000548436 PEX5P50542 639 aa19.91■□□□□ 0.78
PRPF40B-208ENST00000548436 CHST13Q8NET6 341 aa19.91■□□□□ 0.78
PRPF40B-208ENST00000548436 CD101Q93033 1021 aa19.91■□□□□ 0.78
PRPF40B-208ENST00000548436 HAPLN2Q9GZV7 340 aa19.91■□□□□ 0.78
PRPF40B-208ENST00000548436 H0YCG3 227 aa19.91■□□□□ 0.78
PRPF40B-208ENST00000548436 GLRA2P23416 452 aa19.91■□□□□ 0.78
PRPF40B-208ENST00000548436 NLRP11P59045 1033 aaKnown RBP19.91■□□□□ 0.78
PRPF40B-208ENST00000548436 CLDN10P78369 228 aa19.91■□□□□ 0.78
PRPF40B-208ENST00000548436 VGLL4Q14135 290 aa19.91■□□□□ 0.78
PRPF40B-208ENST00000548436 UBL4BQ8N7F7 174 aa19.91■□□□□ 0.78
PRPF40B-208ENST00000548436 ZNF564Q8TBZ8 553 aaPredicted RBP19.91■□□□□ 0.78
PRPF40B-208ENST00000548436 CNKSR2Q8WXI2 1034 aa19.91■□□□□ 0.78
PRPF40B-208ENST00000548436 ZNF653Q96CK0 615 aa19.91■□□□□ 0.78
PRPF40B-208ENST00000548436 DPH5Q9H2P9 285 aa19.91■□□□□ 0.78
PRPF40B-208ENST00000548436 DHX33Q9H6R0 707 aaKnown RBP19.91■□□□□ 0.78
PRPF40B-208ENST00000548436 BTBD7Q9P203 1132 aa19.91■□□□□ 0.78
PRPF40B-208ENST00000548436 UTP11Q9Y3A2 253 aaKnown RBP19.91■□□□□ 0.78
PRPF40B-208ENST00000548436 A0A0G2JMZ2 1700 aa19.91■□□□□ 0.78
PRPF40B-208ENST00000548436 KRT5P13647 590 aa19.9■□□□□ 0.78
PRPF40B-208ENST00000548436 ALDH5A1P51649 535 aaPredicted RBP19.9■□□□□ 0.78
PRPF40B-208ENST00000548436 GCNT1Q02742 428 aa19.9■□□□□ 0.78
PRPF40B-208ENST00000548436 DNAJC21Q5F1R6 531 aaKnown RBP19.9■□□□□ 0.78
PRPF40B-208ENST00000548436 LBX2Q6XYB7 198 aa19.9■□□□□ 0.78
PRPF40B-208ENST00000548436 PSPC1Q8WXF1 523 aaKnown RBP19.9■□□□□ 0.78
PRPF40B-208ENST00000548436 ZBTB45Q96K62 511 aaPredicted RBP19.9■□□□□ 0.78
PRPF40B-208ENST00000548436 CEP89Q96ST8 783 aa19.9■□□□□ 0.78
PRPF40B-208ENST00000548436 PORCNQ9H237 461 aa19.9■□□□□ 0.78
PRPF40B-208ENST00000548436 GTF3C4Q9UKN8 822 aa19.9■□□□□ 0.78
PRPF40B-208ENST00000548436 STYXL1Q9Y6J8 313 aa19.9■□□□□ 0.78
PRPF40B-208ENST00000548436 OTOFQ9HC10 1997 aa19.9■□□□□ 0.78
PRPF40B-208ENST00000548436 IVLP07476 585 aa19.9■□□□□ 0.78
PRPF40B-208ENST00000548436 ACOT2P49753 483 aa19.9■□□□□ 0.78
PRPF40B-208ENST00000548436 PSMD6Q15008 389 aa19.9■□□□□ 0.78
PRPF40B-208ENST00000548436 ACAD10Q6JQN1 1059 aa19.9■□□□□ 0.78
PRPF40B-208ENST00000548436 CRELD2Q6UXH1 353 aaPredicted RBP19.9■□□□□ 0.78
PRPF40B-208ENST00000548436 ZDHHC14Q8IZN3 488 aa19.9■□□□□ 0.78
PRPF40B-208ENST00000548436 GPC2Q8N158 579 aa19.9■□□□□ 0.78
PRPF40B-208ENST00000548436 ATP8B4Q8TF62 1192 aa19.9■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms