RNA–Protein interactions for RNA: ENST00000597968.1

TRIM28-211, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 504 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-211ENST00000597968 LARGE1O95461 756 aa15.08■□□□□ 0
TRIM28-211ENST00000597968 GLUD1P00367 558 aa15.08■□□□□ 0
TRIM28-211ENST00000597968 SPATA31C1P0DKV0 1188 aa15.08■□□□□ 0
TRIM28-211ENST00000597968 PPP2R5AQ15172 486 aa15.08■□□□□ 0
TRIM28-211ENST00000597968 USP41Q3LFD5 358 aa15.08■□□□□ 0
TRIM28-211ENST00000597968 HAUS3Q68CZ6 603 aa15.08■□□□□ 0
TRIM28-211ENST00000597968 TMC5Q6UXY8 1006 aa15.08■□□□□ 0
TRIM28-211ENST00000597968 CATSPER3Q86XQ3 398 aa15.08■□□□□ 0
TRIM28-211ENST00000597968 ASAP3Q8TDY4 903 aa15.08■□□□□ 0
TRIM28-211ENST00000597968 POLR3FQ9H1D9 316 aaPredicted RBP15.08■□□□□ 0
TRIM28-211ENST00000597968 FZD8Q9H461 694 aa15.08■□□□□ 0
TRIM28-211ENST00000597968 IGSF9Q9P2J2 1179 aa15.08■□□□□ 0
TRIM28-211ENST00000597968 N4BP3O15049 544 aa15.07■□□□□ 0
TRIM28-211ENST00000597968 TEX28O15482 410 aa15.07■□□□□ 0
TRIM28-211ENST00000597968 BRD1O95696 1058 aa15.07■□□□□ 0
TRIM28-211ENST00000597968 RBM25P49756 843 aaKnown RBP15.07■□□□□ 0
TRIM28-211ENST00000597968 SCNN1GP51170 649 aa15.07■□□□□ 0
TRIM28-211ENST00000597968 CLCN5P51795 746 aa15.07■□□□□ 0
TRIM28-211ENST00000597968 TCF15Q12870 199 aa15.07■□□□□ 0
TRIM28-211ENST00000597968 IER5LQ5T953 404 aa15.07■□□□□ 0
TRIM28-211ENST00000597968 PDXDC1Q6P996 788 aa15.07■□□□□ 0
TRIM28-211ENST00000597968 C12orf76Q8N812 135 aaPredicted RBP15.07■□□□□ 0
TRIM28-211ENST00000597968 GSTCDQ8NEC7 633 aa15.07■□□□□ 0
TRIM28-211ENST00000597968 PIGOQ8TEQ8 1089 aa15.07■□□□□ 0
TRIM28-211ENST00000597968 CPB2Q96IY4 423 aa15.07■□□□□ 0
TRIM28-211ENST00000597968 ZSCAN31Q96LW9 406 aaPredicted RBP15.07■□□□□ 0
TRIM28-211ENST00000597968 ADPGKQ9BRR6 497 aa15.07■□□□□ 0
TRIM28-211ENST00000597968 RNF39Q9H2S5 420 aa15.07■□□□□ 0
TRIM28-211ENST00000597968 ZDHHC7Q9NXF8 308 aa15.07■□□□□ 0
TRIM28-211ENST00000597968 ADAM28Q9UKQ2 775 aa15.07■□□□□ 0
TRIM28-211ENST00000597968 PRG3Q9Y2Y8 225 aaPredicted RBP15.07■□□□□ 0
TRIM28-211ENST00000597968 USP34Q70CQ2 3546 aa15.06■□□□□ 0
TRIM28-211ENST00000597968 POTEMA6NI47 508 aa15.06■□□□□ 0
TRIM28-211ENST00000597968 LRRIQ4A6NIV6 560 aa15.06■□□□□ 0
TRIM28-211ENST00000597968 JAK2O60674 1132 aa15.06■□□□□ 0
TRIM28-211ENST00000597968 USO1O60763 962 aaKnown RBP15.06■□□□□ 0
TRIM28-211ENST00000597968 OR52Z1P0C646 297 aa15.06■□□□□ 0
TRIM28-211ENST00000597968 ATP2B1P20020 1258 aa15.06■□□□□ 0
TRIM28-211ENST00000597968 MCM7P33993 719 aa15.06■□□□□ 0
TRIM28-211ENST00000597968 NAMPTP43490 491 aa15.06■□□□□ 0
TRIM28-211ENST00000597968 EFNA5P52803 228 aa15.06■□□□□ 0
TRIM28-211ENST00000597968 ELAVL2Q12926 359 aaKnown RBP15.06■□□□□ 0
TRIM28-211ENST00000597968 TDGQ13569 410 aa15.06■□□□□ 0
TRIM28-211ENST00000597968 MAPK6Q16659 721 aa15.06■□□□□ 0
TRIM28-211ENST00000597968 FBXO18Q8NFZ0 1043 aa15.06■□□□□ 0
TRIM28-211ENST00000597968 C8orf76Q96K31 380 aa15.06■□□□□ 0
TRIM28-211ENST00000597968 ZFP42Q96MM3 310 aa15.06■□□□□ 0
TRIM28-211ENST00000597968 TMEM60Q9H2L4 133 aa15.06■□□□□ 0
TRIM28-211ENST00000597968 NXF3Q9H4D5 531 aaKnown RBP15.06■□□□□ 0
TRIM28-211ENST00000597968 WDR6Q9NNW5 1121 aaKnown RBP15.06■□□□□ 0
TRIM28-211ENST00000597968 MAN1C1Q9NR34 630 aa15.06■□□□□ 0
TRIM28-211ENST00000597968 SH2B1Q9NRF2 756 aaPredicted RBP15.06■□□□□ 0
TRIM28-211ENST00000597968 LIMD1Q9UGP4 676 aa15.06■□□□□ 0
TRIM28-211ENST00000597968 PHLPP2Q6ZVD8 1323 aa15.06■□□□□ 0
TRIM28-211ENST00000597968 ACKR2O00590 384 aa15.05■□□□□ -0
TRIM28-211ENST00000597968 GALR2O43603 387 aaPredicted RBP15.05■□□□□ -0
TRIM28-211ENST00000597968 CENPBP07199 599 aaPredicted RBP15.05■□□□□ -0
TRIM28-211ENST00000597968 CYP11B2P19099 503 aa15.05■□□□□ -0
TRIM28-211ENST00000597968 SP100P23497 879 aaPredicted RBP15.05■□□□□ -0
TRIM28-211ENST00000597968 FXR2P51116 673 aaKnown RBP eCLIP15.05■□□□□ -05e-18■■■■□ 25
TRIM28-211ENST00000597968 TUSC3Q13454 348 aa15.05■□□□□ -0
TRIM28-211ENST00000597968 PDIA5Q14554 519 aa15.05■□□□□ -0
TRIM28-211ENST00000597968 ASTLQ6HA08 431 aaPredicted RBP15.05■□□□□ -0
TRIM28-211ENST00000597968 FUT10Q6P4F1 479 aa15.05■□□□□ -0
TRIM28-211ENST00000597968 RTL10Q7L3V2 364 aa15.05■□□□□ -0
TRIM28-211ENST00000597968 APBB1IPQ7Z5R6 666 aaPredicted RBP15.05■□□□□ -0
TRIM28-211ENST00000597968 KIFAP3Q92845 792 aa15.05■□□□□ -0
TRIM28-211ENST00000597968 RAB34Q9BZG1 259 aa15.05■□□□□ -0
TRIM28-211ENST00000597968 MIOSQ9NXC5 875 aa15.05■□□□□ -0
TRIM28-211ENST00000597968 EPS15L1Q9UBC2 864 aa15.05■□□□□ -0
TRIM28-211ENST00000597968 CDH22Q9UJ99 828 aa15.05■□□□□ -0
TRIM28-211ENST00000597968 NOL7Q9UMY1 257 aaKnown RBP15.05■□□□□ -0
TRIM28-211ENST00000597968 DUSP12Q9UNI6 340 aa15.05■□□□□ -0
TRIM28-211ENST00000597968 HES2Q9Y543 173 aa15.05■□□□□ -0
TRIM28-211ENST00000597968 ZFP37Q9Y6Q3 630 aaPredicted RBP15.05■□□□□ -0
TRIM28-211ENST00000597968 SF3B1O75533 1304 aaKnown RBP eCLIP15.05■□□□□ -07e-7■■■■■ 29.5
TRIM28-211ENST00000597968 DENND4AQ7Z401 1863 aa15.04■□□□□ -0
TRIM28-211ENST00000597968 KMT2EQ8IZD2 1858 aa15.04■□□□□ -0
TRIM28-211ENST00000597968 CCDC195A0A1B0GUA6 201 aa15.04■□□□□ -0
TRIM28-211ENST00000597968 ARHGEF35A5YM69 484 aa15.04■□□□□ -0
TRIM28-211ENST00000597968 LAD1O00515 517 aa15.04■□□□□ -0
TRIM28-211ENST00000597968 WNT7AO00755 349 aa15.04■□□□□ -0
TRIM28-211ENST00000597968 MED24O75448 989 aa15.04■□□□□ -0
TRIM28-211ENST00000597968 NPTXRO95502 500 aa15.04■□□□□ -0
TRIM28-211ENST00000597968 SSBP05455 408 aaKnown RBP eCLIP15.04■□□□□ -0
TRIM28-211ENST00000597968 WEE2P0C1S8 567 aa15.04■□□□□ -0
TRIM28-211ENST00000597968 VCPP55072 806 aaKnown RBP15.04■□□□□ -0
TRIM28-211ENST00000597968 PRPF4BQ13523 1007 aaKnown RBP15.04■□□□□ -0
TRIM28-211ENST00000597968 HSP90AA2PQ14568 343 aaPredicted RBP15.04■□□□□ -0
TRIM28-211ENST00000597968 DCAF4L1Q3SXM0 396 aa15.04■□□□□ -0
TRIM28-211ENST00000597968 PADI6Q6TGC4 694 aa15.04■□□□□ -0
TRIM28-211ENST00000597968 NOSTRINQ8IVI9 506 aa15.04■□□□□ -0
TRIM28-211ENST00000597968 KCTD17Q8N5Z5 321 aa15.04■□□□□ -0
TRIM28-211ENST00000597968 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP15.04■□□□□ -0
TRIM28-211ENST00000597968 PARP2Q9UGN5 583 aa15.04■□□□□ -0
TRIM28-211ENST00000597968 CLUHO75153 1309 aa15.03■□□□□ -0
TRIM28-211ENST00000597968 PROB1E7EW31 1015 aa15.03■□□□□ -0
TRIM28-211ENST00000597968 C2CD2LO14523 706 aa15.03■□□□□ -0
TRIM28-211ENST00000597968 B4GALT5O43286 388 aa15.03■□□□□ -0
TRIM28-211ENST00000597968 ST18O60284 1047 aa15.03■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 92.9 ms