RNA–Protein interactions for RNA: ENST00000597136.1

TRIM28-207, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 1,552 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-207ENST00000597136 TMEM161AQ9NX61 479 aa16.44■□□□□ 0.22
TRIM28-207ENST00000597136 GDAQ9Y2T3 454 aa16.44■□□□□ 0.22
TRIM28-207ENST00000597136 INSL6Q9Y581 213 aa16.44■□□□□ 0.22
TRIM28-207ENST00000597136 PHLPP2Q6ZVD8 1323 aa16.44■□□□□ 0.22
TRIM28-207ENST00000597136 K7ENM7 598 aa16.43■□□□□ 0.22
TRIM28-207ENST00000597136 ZNF623O75123 536 aa16.43■□□□□ 0.22
TRIM28-207ENST00000597136 NPTXRO95502 500 aa16.43■□□□□ 0.22
TRIM28-207ENST00000597136 STAG3L1P0CL83 205 aa16.43■□□□□ 0.22
TRIM28-207ENST00000597136 NCBP1Q09161 790 aaKnown RBP16.43■□□□□ 0.22
TRIM28-207ENST00000597136 RAB30Q15771 203 aa16.43■□□□□ 0.22
TRIM28-207ENST00000597136 PAN2Q504Q3 1202 aaKnown RBP16.43■□□□□ 0.22
TRIM28-207ENST00000597136 CLLU1OSQ5K130 101 aa16.43■□□□□ 0.22
TRIM28-207ENST00000597136 Q7L0L9 218 aa16.43■□□□□ 0.22
TRIM28-207ENST00000597136 MLKLQ8NB16 471 aa16.43■□□□□ 0.22
TRIM28-207ENST00000597136 KIAA0895Q8NCT3 520 aa16.43■□□□□ 0.22
TRIM28-207ENST00000597136 TIFAQ96CG3 184 aa16.43■□□□□ 0.22
TRIM28-207ENST00000597136 YME1L1Q96TA2 773 aa16.43■□□□□ 0.22
TRIM28-207ENST00000597136 TTYH1Q9H313 450 aaPredicted RBP16.43■□□□□ 0.22
TRIM28-207ENST00000597136 ELAC1Q9H777 363 aaKnown RBP16.43■□□□□ 0.22
TRIM28-207ENST00000597136 MRPL44Q9H9J2 332 aaKnown RBP16.43■□□□□ 0.22
TRIM28-207ENST00000597136 CERS4Q9HA82 394 aa16.43■□□□□ 0.22
TRIM28-207ENST00000597136 TBX20Q9UMR3 447 aa16.43■□□□□ 0.22
TRIM28-207ENST00000597136 COL4A4P53420 1690 aaPredicted RBP16.43■□□□□ 0.22
TRIM28-207ENST00000597136 EOMESO95936 686 aa16.43■□□□□ 0.22
TRIM28-207ENST00000597136 AFF1P51825 1210 aaKnown RBP16.43■□□□□ 0.22
TRIM28-207ENST00000597136 KCNA1Q09470 495 aa16.43■□□□□ 0.22
TRIM28-207ENST00000597136 TMEM132AQ24JP5 1023 aa16.43■□□□□ 0.22
TRIM28-207ENST00000597136 ATF7IP2Q5U623 682 aa16.43■□□□□ 0.22
TRIM28-207ENST00000597136 SLC27A1Q6PCB7 646 aa16.43■□□□□ 0.22
TRIM28-207ENST00000597136 AGMOQ6ZNB7 445 aa16.43■□□□□ 0.22
TRIM28-207ENST00000597136 FAM43BQ6ZT52 329 aaPredicted RBP16.43■□□□□ 0.22
TRIM28-207ENST00000597136 MRPL10Q7Z7H8 261 aaKnown RBP16.43■□□□□ 0.22
TRIM28-207ENST00000597136 FAM161BQ96MY7 647 aa16.43■□□□□ 0.22
TRIM28-207ENST00000597136 APOL6Q9BWW8 343 aa16.43■□□□□ 0.22
TRIM28-207ENST00000597136 STRA6Q9BX79 667 aa16.43■□□□□ 0.22
TRIM28-207ENST00000597136 HCSTQ9UBK5 93 aa16.43■□□□□ 0.22
TRIM28-207ENST00000597136 KCNG1Q9UIX4 513 aa16.43■□□□□ 0.22
TRIM28-207ENST00000597136 IPPQ9Y573 584 aa16.43■□□□□ 0.22
TRIM28-207ENST00000597136 LINC01553A4QN01 128 aa16.42■□□□□ 0.22
TRIM28-207ENST00000597136 PPP1R3GB7ZBB8 358 aa16.42■□□□□ 0.22
TRIM28-207ENST00000597136 MYBP10242 640 aa16.42■□□□□ 0.22
TRIM28-207ENST00000597136 CD44P16070 742 aaKnown RBP16.42■□□□□ 0.22
TRIM28-207ENST00000597136 PRCPP42785 496 aa16.42■□□□□ 0.22
TRIM28-207ENST00000597136 GTF2BQ00403 316 aa16.42■□□□□ 0.22
TRIM28-207ENST00000597136 TAP1Q03518 808 aa16.42■□□□□ 0.22
TRIM28-207ENST00000597136 ANO6Q4KMQ2 910 aa16.42■□□□□ 0.22
TRIM28-207ENST00000597136 COBLL1Q53SF7 1204 aa16.42■□□□□ 0.22
TRIM28-207ENST00000597136 EPM2AIP1Q7L775 607 aaPredicted RBP16.42■□□□□ 0.22
TRIM28-207ENST00000597136 ZBTB33Q86T24 672 aa16.42■□□□□ 0.22
TRIM28-207ENST00000597136 SP7Q8TDD2 431 aaPredicted RBP16.42■□□□□ 0.22
TRIM28-207ENST00000597136 HELQQ8TDG4 1101 aa16.42■□□□□ 0.22
TRIM28-207ENST00000597136 CASD1Q96PB1 797 aa16.42■□□□□ 0.22
TRIM28-207ENST00000597136 MRPL4Q9BYD3 311 aaKnown RBP16.42■□□□□ 0.22
TRIM28-207ENST00000597136 HAPLN2Q9GZV7 340 aa16.42■□□□□ 0.22
TRIM28-207ENST00000597136 CXCL16Q9H2A7 254 aa16.42■□□□□ 0.22
TRIM28-207ENST00000597136 TSPY26PQ9H489 355 aa16.42■□□□□ 0.22
TRIM28-207ENST00000597136 NXF3Q9H4D5 531 aaKnown RBP16.42■□□□□ 0.22
TRIM28-207ENST00000597136 SLC28A3Q9HAS3 691 aa16.42■□□□□ 0.22
TRIM28-207ENST00000597136 PTPRHQ9HD43 1115 aa16.42■□□□□ 0.22
TRIM28-207ENST00000597136 MAPK8IP1Q9UQF2 711 aa16.42■□□□□ 0.22
TRIM28-207ENST00000597136 EYSQ5T1H1 3165 aa16.42■□□□□ 0.22
TRIM28-207ENST00000597136 TBKBP1A7MCY6 615 aa16.41■□□□□ 0.22
TRIM28-207ENST00000597136 TISP43B9A030 160 aa16.41■□□□□ 0.22
TRIM28-207ENST00000597136 ABLIM1O14639 778 aa16.41■□□□□ 0.22
TRIM28-207ENST00000597136 PPP1R37O75864 691 aa16.41■□□□□ 0.22
TRIM28-207ENST00000597136 AKAP5P24588 427 aa16.41■□□□□ 0.22
TRIM28-207ENST00000597136 STRN3Q13033 797 aa16.41■□□□□ 0.22
TRIM28-207ENST00000597136 LRRC55Q6ZSA7 311 aa16.41■□□□□ 0.22
TRIM28-207ENST00000597136 C11orf57Q6ZUT1 292 aaPredicted RBP16.41■□□□□ 0.22
TRIM28-207ENST00000597136 ADSSL1Q8N142 457 aa16.41■□□□□ 0.22
TRIM28-207ENST00000597136 SLC17A8Q8NDX2 589 aa16.41■□□□□ 0.22
TRIM28-207ENST00000597136 CCDC51Q96ER9 411 aa16.41■□□□□ 0.22
TRIM28-207ENST00000597136 DNAJC25Q9H1X3 360 aa16.41■□□□□ 0.22
TRIM28-207ENST00000597136 SEMA6BQ9H3T3 888 aa16.41■□□□□ 0.22
TRIM28-207ENST00000597136 ST6GALNAC4Q9H4F1 302 aa16.41■□□□□ 0.22
TRIM28-207ENST00000597136 TNFSF13BQ9Y275 285 aa16.41■□□□□ 0.22
TRIM28-207ENST00000597136 BRWD1Q9NSI6 2320 aa16.41■□□□□ 0.22
TRIM28-207ENST00000597136 ANKRD63C9JTQ0 380 aa16.4■□□□□ 0.22
TRIM28-207ENST00000597136 N4BP3O15049 544 aa16.4■□□□□ 0.22
TRIM28-207ENST00000597136 OFD1O75665 1012 aa16.4■□□□□ 0.22
TRIM28-207ENST00000597136 GCNT3O95395 438 aa16.4■□□□□ 0.22
TRIM28-207ENST00000597136 LINC00271P0C7V0 271 aa16.4■□□□□ 0.22
TRIM28-207ENST00000597136 SKIP12755 728 aa16.4■□□□□ 0.22
TRIM28-207ENST00000597136 RAB27AP51159 221 aa16.4■□□□□ 0.22
TRIM28-207ENST00000597136 BTG3Q14201 252 aaPredicted RBP16.4■□□□□ 0.22
TRIM28-207ENST00000597136 PPP2R2DQ66LE6 453 aa16.4■□□□□ 0.22
TRIM28-207ENST00000597136 SLC39A4Q6P5W5 647 aa16.4■□□□□ 0.22
TRIM28-207ENST00000597136 GUF1Q8N442 669 aaKnown RBP16.4■□□□□ 0.22
TRIM28-207ENST00000597136 CEP120Q8N960 986 aa16.4■□□□□ 0.22
TRIM28-207ENST00000597136 SCFD1Q8WVM8 642 aa16.4■□□□□ 0.22
TRIM28-207ENST00000597136 KCNN1Q92952 543 aa16.4■□□□□ 0.22
TRIM28-207ENST00000597136 C17orf80Q9BSJ5 609 aa16.4■□□□□ 0.22
TRIM28-207ENST00000597136 TRIM6Q9C030 488 aaPredicted RBP16.4■□□□□ 0.22
TRIM28-207ENST00000597136 ZNF576Q9H609 170 aa16.4■□□□□ 0.22
TRIM28-207ENST00000597136 MIOSQ9NXC5 875 aa16.4■□□□□ 0.22
TRIM28-207ENST00000597136 MTUS1Q9ULD2 1270 aa16.4■□□□□ 0.22
TRIM28-207ENST00000597136 PCDHB13Q9Y5F0 798 aa16.4■□□□□ 0.22
TRIM28-207ENST00000597136 PRUNE2Q8WUY3 3088 aa16.39■□□□□ 0.21
TRIM28-207ENST00000597136 RFXAPO00287 272 aa16.39■□□□□ 0.21
TRIM28-207ENST00000597136 PRPF6O94906 941 aaKnown RBP16.39■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 108.2 ms