RNA–Protein interactions for RNA: ENST00000568605.5

CLK3-224, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,047 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-224ENST00000568605 MLH1P40692 756 aa14.25□□□□□ -0.13
CLK3-224ENST00000568605 MATR3P43243 847 aaKnown RBP eCLIP14.25□□□□□ -0.13
CLK3-224ENST00000568605 KRT17Q04695 432 aa14.25□□□□□ -0.13
CLK3-224ENST00000568605 GRIK3Q13003 919 aa14.25□□□□□ -0.13
CLK3-224ENST00000568605 ALCAMQ13740 583 aa14.25□□□□□ -0.13
CLK3-224ENST00000568605 NOLC1Q14978 699 aaKnown RBP eCLIP14.25□□□□□ -0.13
CLK3-224ENST00000568605 E2F4Q16254 413 aa14.25□□□□□ -0.13
CLK3-224ENST00000568605 KCNT2Q6UVM3 1135 aa14.25□□□□□ -0.13
CLK3-224ENST00000568605 MPZL3Q6UWV2 235 aa14.25□□□□□ -0.13
CLK3-224ENST00000568605 SFR1Q86XK3 245 aa14.25□□□□□ -0.13
CLK3-224ENST00000568605 CCDC65Q8IXS2 484 aa14.25□□□□□ -0.13
CLK3-224ENST00000568605 KLHL23Q8NBE8 558 aa14.25□□□□□ -0.13
CLK3-224ENST00000568605 TMEM169Q96HH4 297 aa14.25□□□□□ -0.13
CLK3-224ENST00000568605 ACO2Q99798 780 aaKnown RBP14.25□□□□□ -0.13
CLK3-224ENST00000568605 TCHPQ9BT92 498 aa14.25□□□□□ -0.13
CLK3-224ENST00000568605 CCDC94Q9BW85 323 aaPredicted RBP14.25□□□□□ -0.13
CLK3-224ENST00000568605 TOPORSQ9NS56 1045 aaPredicted RBP14.25□□□□□ -0.13
CLK3-224ENST00000568605 ANKFY1Q9P2R3 1169 aa14.25□□□□□ -0.13
CLK3-224ENST00000568605 PARP2Q9UGN5 583 aa14.25□□□□□ -0.13
CLK3-224ENST00000568605 USP25Q9UHP3 1055 aa14.25□□□□□ -0.13
CLK3-224ENST00000568605 HES2Q9Y543 173 aa14.25□□□□□ -0.13
CLK3-224ENST00000568605 VWA8A3KMH1 1905 aa14.25□□□□□ -0.13
CLK3-224ENST00000568605 ARL5CA6NH57 179 aa14.24□□□□□ -0.13
CLK3-224ENST00000568605 MYMKA6NI61 221 aa14.24□□□□□ -0.13
CLK3-224ENST00000568605 NR1I2O75469 434 aa14.24□□□□□ -0.13
CLK3-224ENST00000568605 TOM1L1O75674 476 aa14.24□□□□□ -0.13
CLK3-224ENST00000568605 FGF18O76093 207 aa14.24□□□□□ -0.13
CLK3-224ENST00000568605 RECQL4O94761 1208 aa14.24□□□□□ -0.13
CLK3-224ENST00000568605 EDN1P05305 212 aa14.24□□□□□ -0.13
CLK3-224ENST00000568605 MCF2P10911 925 aa14.24□□□□□ -0.13
CLK3-224ENST00000568605 CMA1P23946 247 aa14.24□□□□□ -0.13
CLK3-224ENST00000568605 LIG4P49917 911 aa14.24□□□□□ -0.13
CLK3-224ENST00000568605 YARSP54577 528 aaKnown RBP14.24□□□□□ -0.13
CLK3-224ENST00000568605 BMS1Q14692 1282 aaKnown RBP14.24□□□□□ -0.13
CLK3-224ENST00000568605 NT5DC1Q5TFE4 455 aa14.24□□□□□ -0.13
CLK3-224ENST00000568605 STXBP4Q6ZWJ1 553 aa14.24□□□□□ -0.13
CLK3-224ENST00000568605 TAS1R3Q7RTX0 852 aa14.24□□□□□ -0.13
CLK3-224ENST00000568605 CCDC34Q96HJ3 373 aa14.24□□□□□ -0.13
CLK3-224ENST00000568605 GAD1Q99259 594 aa14.24□□□□□ -0.13
CLK3-224ENST00000568605 TMEM175Q9BSA9 504 aa14.24□□□□□ -0.13
CLK3-224ENST00000568605 TARS2Q9BW92 718 aaKnown RBP14.24□□□□□ -0.13
CLK3-224ENST00000568605 GBP3Q9H0R5 595 aa14.24□□□□□ -0.13
CLK3-224ENST00000568605 ST6GALNAC4Q9H4F1 302 aa14.24□□□□□ -0.13
CLK3-224ENST00000568605 NSUN3Q9H649 340 aaKnown RBP14.24□□□□□ -0.13
CLK3-224ENST00000568605 MRPL44Q9H9J2 332 aaKnown RBP14.24□□□□□ -0.13
CLK3-224ENST00000568605 OLFML3Q9NRN5 406 aa14.24□□□□□ -0.13
CLK3-224ENST00000568605 KBTBD4Q9NVX7 518 aa14.24□□□□□ -0.13
CLK3-224ENST00000568605 SPG21Q9NZD8 308 aa14.24□□□□□ -0.13
CLK3-224ENST00000568605 HCSTQ9UBK5 93 aa14.24□□□□□ -0.13
CLK3-224ENST00000568605 STK39Q9UEW8 545 aa14.24□□□□□ -0.13
CLK3-224ENST00000568605 PUF60Q9UHX1 559 aaKnown RBP14.24□□□□□ -0.13
CLK3-224ENST00000568605 KCNH3Q9ULD8 1083 aa14.24□□□□□ -0.13
CLK3-224ENST00000568605 PLAGL2Q9UPG8 496 aa14.24□□□□□ -0.13
CLK3-224ENST00000568605 LZTS1Q9Y250 596 aa14.24□□□□□ -0.13
CLK3-224ENST00000568605 PLXNA3P51805 1871 aa14.23□□□□□ -0.13
CLK3-224ENST00000568605 FSD2A1L4K1 749 aa14.23□□□□□ -0.13
CLK3-224ENST00000568605 GOLGA6L4A6NEF3 574 aa14.23□□□□□ -0.13
CLK3-224ENST00000568605 TTLL13PA6NNM8 815 aa14.23□□□□□ -0.13
CLK3-224ENST00000568605 CLDN3O15551 220 aa14.23□□□□□ -0.13
CLK3-224ENST00000568605 POMCP01189 267 aa14.23□□□□□ -0.13
CLK3-224ENST00000568605 ITGB1P05556 798 aa14.23□□□□□ -0.13
CLK3-224ENST00000568605 PFKFB1P16118 471 aa14.23□□□□□ -0.13
CLK3-224ENST00000568605 AKAP5P24588 427 aa14.23□□□□□ -0.13
CLK3-224ENST00000568605 SCNN1GP51170 649 aa14.23□□□□□ -0.13
CLK3-224ENST00000568605 BCAR1P56945 870 aa14.23□□□□□ -0.13
CLK3-224ENST00000568605 ASIC1P78348 528 aa14.23□□□□□ -0.13
CLK3-224ENST00000568605 PLCB3Q01970 1234 aa14.23□□□□□ -0.13
CLK3-224ENST00000568605 SKIV2LQ15477 1246 aaKnown RBP14.23□□□□□ -0.13
CLK3-224ENST00000568605 EEF1DP3Q658K8 133 aa14.23□□□□□ -0.13
CLK3-224ENST00000568605 LRRC55Q6ZSA7 311 aa14.23□□□□□ -0.13
CLK3-224ENST00000568605 MAP4K3Q8IVH8 894 aa14.23□□□□□ -0.13
CLK3-224ENST00000568605 PPM1EQ8WY54 764 aa14.23□□□□□ -0.13
CLK3-224ENST00000568605 MRPS27Q92552 414 aaKnown RBP14.23□□□□□ -0.13
CLK3-224ENST00000568605 DNAJC19Q96DA6 116 aa14.23□□□□□ -0.13
CLK3-224ENST00000568605 CDT1Q9H211 546 aa14.23□□□□□ -0.13
CLK3-224ENST00000568605 ALG13Q9NP73 1137 aaKnown RBP14.23□□□□□ -0.13
CLK3-224ENST00000568605 TLR9Q9NR96 1032 aa14.23□□□□□ -0.13
CLK3-224ENST00000568605 PANK4Q9NVE7 773 aa14.23□□□□□ -0.13
CLK3-224ENST00000568605 TBX20Q9UMR3 447 aa14.23□□□□□ -0.13
CLK3-224ENST00000568605 EXOC7Q9UPT5 735 aa14.23□□□□□ -0.13
CLK3-224ENST00000568605 A0A1W2PQ27 194 aa14.22□□□□□ -0.13
CLK3-224ENST00000568605 A0A1W2PQ64 194 aa14.22□□□□□ -0.13
CLK3-224ENST00000568605 A0A1W2PQD8 194 aa14.22□□□□□ -0.13
CLK3-224ENST00000568605 FRMD3A2A2Y4 597 aa14.22□□□□□ -0.13
CLK3-224ENST00000568605 GRM6O15303 877 aa14.22□□□□□ -0.13
CLK3-224ENST00000568605 GCNT3O95395 438 aa14.22□□□□□ -0.13
CLK3-224ENST00000568605 HARSP12081 509 aaKnown RBP14.22□□□□□ -0.13
CLK3-224ENST00000568605 PROZP22891 400 aa14.22□□□□□ -0.13
CLK3-224ENST00000568605 GRM5P41594 1212 aa14.22□□□□□ -0.13
CLK3-224ENST00000568605 GTF2BQ00403 316 aa14.22□□□□□ -0.13
CLK3-224ENST00000568605 CCDC85BQ15834 202 aaPredicted RBP14.22□□□□□ -0.13
CLK3-224ENST00000568605 KYAT1Q16773 422 aa14.22□□□□□ -0.13
CLK3-224ENST00000568605 HERC4Q5GLZ8 1057 aaPredicted RBP14.22□□□□□ -0.13
CLK3-224ENST00000568605 PDE12Q6L8Q7 609 aaKnown RBP14.22□□□□□ -0.13
CLK3-224ENST00000568605 SLC39A11Q8N1S5 342 aa14.22□□□□□ -0.13
CLK3-224ENST00000568605 POF1BQ8WVV4 589 aa14.22□□□□□ -0.13
CLK3-224ENST00000568605 ZFP42Q96MM3 310 aa14.22□□□□□ -0.13
CLK3-224ENST00000568605 TRIM9Q9C026 710 aa14.22□□□□□ -0.13
CLK3-224ENST00000568605 RNF39Q9H2S5 420 aa14.22□□□□□ -0.13
CLK3-224ENST00000568605 NRDE2Q9H7Z3 1164 aa14.22□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 78.6 ms