RNA–Protein interactions for RNA: ENST00000450966.5

USP40-208, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USP40, Length 5,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-208ENST00000450966 HBS1LQ9Y450 684 aaKnown RBP14.06□□□□□ -0.16
USP40-208ENST00000450966 RBM12BQ8IXT5 1001 aaKnown RBP14.06□□□□□ -0.16
USP40-208ENST00000450966 PNMA1Q8ND90 353 aa14.06□□□□□ -0.16
USP40-208ENST00000450966 CAPSLQ8WWF8 208 aa14.06□□□□□ -0.16
USP40-208ENST00000450966 PNKPQ96T60 521 aa14.06□□□□□ -0.16
USP40-208ENST00000450966 SERPINB13Q9UIV8 391 aa14.06□□□□□ -0.16
USP40-208ENST00000450966 ZDHHC9Q9Y397 364 aa14.06□□□□□ -0.16
USP40-208ENST00000450966 TRPM1Q7Z4N2 1603 aa14.06□□□□□ -0.16
USP40-208ENST00000450966 GRK2P25098 689 aa14.06□□□□□ -0.16
USP40-208ENST00000450966 IL12RB1P42701 662 aa14.06□□□□□ -0.16
USP40-208ENST00000450966 KPNA2P52292 529 aaKnown RBP14.06□□□□□ -0.16
USP40-208ENST00000450966 STK4Q13043 487 aa14.06□□□□□ -0.16
USP40-208ENST00000450966 DHX34Q14147 1143 aaKnown RBP14.06□□□□□ -0.16
USP40-208ENST00000450966 TAS2R42Q7RTR8 314 aa14.06□□□□□ -0.16
USP40-208ENST00000450966 TESPA1A2RU30 521 aaPredicted RBP14.06□□□□□ -0.16
USP40-208ENST00000450966 MIF4GDA9UHW6 222 aaKnown RBP14.06□□□□□ -0.16
USP40-208ENST00000450966 CFAP99D6REC4 459 aa14.06□□□□□ -0.16
USP40-208ENST00000450966 FKBP6O75344 327 aa14.06□□□□□ -0.16
USP40-208ENST00000450966 VCPP55072 806 aaKnown RBP14.06□□□□□ -0.16
USP40-208ENST00000450966 HADHQ16836 314 aaKnown RBP14.06□□□□□ -0.16
USP40-208ENST00000450966 STK32AQ8WU08 396 aa14.06□□□□□ -0.16
USP40-208ENST00000450966 ROPN1BQ9BZX4 212 aaPredicted RBP14.06□□□□□ -0.16
USP40-208ENST00000450966 ROPN1Q9HAT0 212 aaPredicted RBP14.06□□□□□ -0.16
USP40-208ENST00000450966 CYP4F11Q9HBI6 524 aa14.06□□□□□ -0.16
USP40-208ENST00000450966 EMC3Q9P0I2 261 aa14.06□□□□□ -0.16
USP40-208ENST00000450966 FAM153AQ9UHL3 310 aa14.06□□□□□ -0.16
USP40-208ENST00000450966 SPHKAPQ2M3C7 1700 aa14.06□□□□□ -0.16
USP40-208ENST00000450966 MAFGO15525 162 aa14.06□□□□□ -0.16
USP40-208ENST00000450966 ASAP2O43150 1006 aa14.06□□□□□ -0.16
USP40-208ENST00000450966 PPP2R5DQ14738 602 aa14.06□□□□□ -0.16
USP40-208ENST00000450966 IZUMO2Q6UXV1 221 aa14.06□□□□□ -0.16
USP40-208ENST00000450966 RSRC2Q7L4I2 434 aaKnown RBP14.06□□□□□ -0.16
USP40-208ENST00000450966 GTF3C2Q8WUA4 911 aaPredicted RBP14.06□□□□□ -0.16
USP40-208ENST00000450966 LSG1Q9H089 658 aaKnown RBP14.06□□□□□ -0.16
USP40-208ENST00000450966 RNF181Q9P0P0 153 aa14.06□□□□□ -0.16
USP40-208ENST00000450966 L3MBTL1Q9Y468 752 aa14.06□□□□□ -0.16
USP40-208ENST00000450966 CAMSAP1Q5T5Y3 1602 aa14.06□□□□□ -0.16
USP40-208ENST00000450966 DIP2AQ14689 1571 aa14.05□□□□□ -0.16
USP40-208ENST00000450966 CYTH3O43739 400 aa14.05□□□□□ -0.16
USP40-208ENST00000450966 TRIM49P0CI25 452 aa14.05□□□□□ -0.16
USP40-208ENST00000450966 TRIM49CP0CI26 452 aa14.05□□□□□ -0.16
USP40-208ENST00000450966 FAM47AQ5JRC9 791 aa14.05□□□□□ -0.16
USP40-208ENST00000450966 NEK8Q86SG6 692 aa14.05□□□□□ -0.16
USP40-208ENST00000450966 METTL13Q8N6R0 699 aa14.05□□□□□ -0.16
USP40-208ENST00000450966 FBXL13Q8NEE6 735 aa14.05□□□□□ -0.16
USP40-208ENST00000450966 P2RX5Q93086 422 aa14.05□□□□□ -0.16
USP40-208ENST00000450966 TRIM8Q9BZR9 551 aa14.05□□□□□ -0.16
USP40-208ENST00000450966 KLHL4Q9C0H6 718 aa14.05□□□□□ -0.16
USP40-208ENST00000450966 BHMT2Q9H2M3 363 aa14.05□□□□□ -0.16
USP40-208ENST00000450966 RNPEPQ9H4A4 650 aa14.05□□□□□ -0.16
USP40-208ENST00000450966 CROCC2H7BZ55 1655 aa14.05□□□□□ -0.16
USP40-208ENST00000450966 HNRNPRO43390 633 aaKnown RBP14.05□□□□□ -0.16
USP40-208ENST00000450966 MFN2O95140 757 aa14.05□□□□□ -0.16
USP40-208ENST00000450966 CCND2P30279 289 aa14.05□□□□□ -0.16
USP40-208ENST00000450966 CHRNA3P32297 505 aa14.05□□□□□ -0.16
USP40-208ENST00000450966 SLC34A1Q06495 639 aa14.05□□□□□ -0.16
USP40-208ENST00000450966 STAT4Q14765 748 aa14.05□□□□□ -0.16
USP40-208ENST00000450966 RGS21Q2M5E4 152 aa14.05□□□□□ -0.16
USP40-208ENST00000450966 TSHZ1Q6ZSZ6 1077 aa14.05□□□□□ -0.16
USP40-208ENST00000450966 TRIM67Q6ZTA4 783 aa14.05□□□□□ -0.16
USP40-208ENST00000450966 SEPT1Q8WYJ6 367 aa14.05□□□□□ -0.16
USP40-208ENST00000450966 COA7Q96BR5 231 aa14.05□□□□□ -0.16
USP40-208ENST00000450966 DEPDC7Q96QD5 511 aa14.05□□□□□ -0.16
USP40-208ENST00000450966 ZWILCHQ9H900 591 aa14.05□□□□□ -0.16
USP40-208ENST00000450966 SFI1A8K8P3 1242 aa14.05□□□□□ -0.16
USP40-208ENST00000450966 LAD1O00515 517 aa14.05□□□□□ -0.16
USP40-208ENST00000450966 SEC24DO94855 1032 aaPredicted RBP14.05□□□□□ -0.16
USP40-208ENST00000450966 LRPAP1P30533 357 aa14.05□□□□□ -0.16
USP40-208ENST00000450966 MESDQ14696 234 aa14.05□□□□□ -0.16
USP40-208ENST00000450966 HDAC11Q96DB2 347 aa14.05□□□□□ -0.16
USP40-208ENST00000450966 DDX20Q9UHI6 824 aaKnown RBP14.05□□□□□ -0.16
USP40-208ENST00000450966 DIP2CQ9Y2E4 1556 aa14.05□□□□□ -0.16
USP40-208ENST00000450966 SETBP1Q9Y6X0 1596 aa14.05□□□□□ -0.16
USP40-208ENST00000450966 PSMD14O00487 310 aa14.05□□□□□ -0.16
USP40-208ENST00000450966 DTNBO60941 627 aa14.05□□□□□ -0.16
USP40-208ENST00000450966 ENO1P06733 434 aaKnown RBP14.05□□□□□ -0.16
USP40-208ENST00000450966 CALB2P22676 271 aa14.05□□□□□ -0.16
USP40-208ENST00000450966 GSTA3Q16772 222 aa14.05□□□□□ -0.16
USP40-208ENST00000450966 SP8Q8IXZ3 490 aa14.05□□□□□ -0.16
USP40-208ENST00000450966 RPS6KC1Q96S38 1066 aa14.05□□□□□ -0.16
USP40-208ENST00000450966 DBNDD1Q9H9R9 158 aa14.05□□□□□ -0.16
USP40-208ENST00000450966 MATN2O00339 956 aa14.04□□□□□ -0.16
USP40-208ENST00000450966 NFIBO00712 420 aa14.04□□□□□ -0.16
USP40-208ENST00000450966 AARSP49588 968 aaKnown RBP eCLIP14.04□□□□□ -0.16
USP40-208ENST00000450966 EXOC3L4Q17RC7 722 aa14.04□□□□□ -0.16
USP40-208ENST00000450966 PEX5LQ8IYB4 626 aa14.04□□□□□ -0.16
USP40-208ENST00000450966 PYROXD1Q8WU10 500 aa14.04□□□□□ -0.16
USP40-208ENST00000450966 THTPAQ9BU02 230 aa14.04□□□□□ -0.16
USP40-208ENST00000450966 ATP6V1HQ9UI12 483 aa14.04□□□□□ -0.16
USP40-208ENST00000450966 KLHL20Q9Y2M5 609 aa14.04□□□□□ -0.16
USP40-208ENST00000450966 PNMA6EA0A0J9YXQ4 647 aa14.04□□□□□ -0.16
USP40-208ENST00000450966 CLASP2O75122 1294 aaKnown RBP14.04□□□□□ -0.16
USP40-208ENST00000450966 BAIAP3O94812 1187 aa14.04□□□□□ -0.16
USP40-208ENST00000450966 HSPA4LO95757 839 aa14.04□□□□□ -0.16
USP40-208ENST00000450966 PSMC3P17980 439 aa14.04□□□□□ -0.16
USP40-208ENST00000450966 PRAMEP78395 509 aa14.04□□□□□ -0.16
USP40-208ENST00000450966 TTC33Q6PID6 262 aaPredicted RBP14.04□□□□□ -0.16
USP40-208ENST00000450966 LRRC34Q8IZ02 419 aa14.04□□□□□ -0.16
USP40-208ENST00000450966 ABI1Q8IZP0 508 aa14.04□□□□□ -0.16
USP40-208ENST00000450966 NOL6Q9H6R4 1146 aaKnown RBP14.04□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms