RNA–Protein interactions for RNA: ENST00000447578.6

VPS29-202, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 996 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-202ENST00000447578 NXPE1Q8N323 547 aa5.35□□□□□ -1.55
VPS29-202ENST00000447578 CPT1CQ8TCG5 803 aa5.35□□□□□ -1.55
VPS29-202ENST00000447578 PROKR1Q8TCW9 393 aa5.35□□□□□ -1.55
VPS29-202ENST00000447578 MORC4Q8TE76 937 aa5.35□□□□□ -1.55
VPS29-202ENST00000447578 COG1Q8WTW3 980 aa5.35□□□□□ -1.55
VPS29-202ENST00000447578 ST8SIA2Q92186 375 aa5.35□□□□□ -1.55
VPS29-202ENST00000447578 RPGRQ92834 1020 aaKnown RBP5.35□□□□□ -1.55
VPS29-202ENST00000447578 PMM1Q92871 262 aa5.35□□□□□ -1.55
VPS29-202ENST00000447578 LENG9Q96B70 501 aa5.35□□□□□ -1.55
VPS29-202ENST00000447578 HOOK2Q96ED9 719 aa5.35□□□□□ -1.55
VPS29-202ENST00000447578 SOX7Q9BT81 388 aa5.35□□□□□ -1.55
VPS29-202ENST00000447578 MYL10Q9BUA6 226 aa5.35□□□□□ -1.55
VPS29-202ENST00000447578 MTG2Q9H4K7 406 aa5.35□□□□□ -1.55
VPS29-202ENST00000447578 C14orf93Q9H972 538 aaKnown RBP5.35□□□□□ -1.55
VPS29-202ENST00000447578 CABP5Q9NP86 173 aa5.35□□□□□ -1.55
VPS29-202ENST00000447578 ING3Q9NXR8 418 aa5.35□□□□□ -1.55
VPS29-202ENST00000447578 TRHDEQ9UKU6 1024 aa5.35□□□□□ -1.55
VPS29-202ENST00000447578 SORCS3Q9UPU3 1222 aa5.35□□□□□ -1.55
VPS29-202ENST00000447578 ZKSCAN5Q9Y2L8 839 aa5.35□□□□□ -1.55
VPS29-202ENST00000447578 CEP162Q5TB80 1403 aa5.34□□□□□ -1.55
VPS29-202ENST00000447578 A0A0A6YYJ9 748 aa5.34□□□□□ -1.55
VPS29-202ENST00000447578 E2F8A0AVK6 867 aa5.34□□□□□ -1.55
VPS29-202ENST00000447578 GAS7O60861 476 aa5.34□□□□□ -1.55
VPS29-202ENST00000447578 IPO13O94829 963 aaKnown RBP5.34□□□□□ -1.55
VPS29-202ENST00000447578 PRPF6O94906 941 aaKnown RBP5.34□□□□□ -1.55
VPS29-202ENST00000447578 F2P00734 622 aa5.34□□□□□ -1.55
VPS29-202ENST00000447578 KRT18P05783 430 aaKnown RBP5.34□□□□□ -1.55
VPS29-202ENST00000447578 GNAT2P19087 354 aa5.34□□□□□ -1.55
VPS29-202ENST00000447578 ADRA1BP35368 520 aa5.34□□□□□ -1.55
VPS29-202ENST00000447578 GNALP38405 381 aa5.34□□□□□ -1.55
VPS29-202ENST00000447578 BIRC2Q13490 618 aa5.34□□□□□ -1.55
VPS29-202ENST00000447578 MAP9Q49MG5 647 aa5.34□□□□□ -1.55
VPS29-202ENST00000447578 SYDE2Q5VT97 1194 aa5.34□□□□□ -1.55
VPS29-202ENST00000447578 IQSEC1Q6DN90 963 aa5.34□□□□□ -1.55
VPS29-202ENST00000447578 CCSAPQ6IQ19 270 aaPredicted RBP5.34□□□□□ -1.55
VPS29-202ENST00000447578 KANSL1Q7Z3B3 1105 aa5.34□□□□□ -1.55
VPS29-202ENST00000447578 EXOC8Q8IYI6 725 aa5.34□□□□□ -1.55
VPS29-202ENST00000447578 RTF1Q92541 710 aaKnown RBP5.34□□□□□ -1.55
VPS29-202ENST00000447578 CHMP4CQ96CF2 233 aa5.34□□□□□ -1.55
VPS29-202ENST00000447578 ORAI3Q9BRQ5 295 aa5.34□□□□□ -1.55
VPS29-202ENST00000447578 PITHD1Q9GZP4 211 aaPredicted RBP5.34□□□□□ -1.55
VPS29-202ENST00000447578 POFUT1Q9H488 388 aa5.34□□□□□ -1.55
VPS29-202ENST00000447578 FZD1Q9UP38 647 aa5.34□□□□□ -1.55
VPS29-202ENST00000447578 TTBK1Q5TCY1 1321 aaPredicted RBP5.33□□□□□ -1.56
VPS29-202ENST00000447578 ZNF891A8MT65 544 aaPredicted RBP5.33□□□□□ -1.56
VPS29-202ENST00000447578 GABRDO14764 452 aa5.33□□□□□ -1.56
VPS29-202ENST00000447578 FKBP9O95302 570 aa5.33□□□□□ -1.56
VPS29-202ENST00000447578 NUDT3O95989 172 aa5.33□□□□□ -1.56
VPS29-202ENST00000447578 CCND1P24385 295 aa5.33□□□□□ -1.56
VPS29-202ENST00000447578 ZFP36P26651 326 aaKnown RBP5.33□□□□□ -1.56
VPS29-202ENST00000447578 RHBDL3P58872 404 aa5.33□□□□□ -1.56
VPS29-202ENST00000447578 PIN1Q13526 163 aaPredicted RBP5.33□□□□□ -1.56
VPS29-202ENST00000447578 CSRP2Q16527 193 aa5.33□□□□□ -1.56
VPS29-202ENST00000447578 CREB3L3Q68CJ9 461 aa5.33□□□□□ -1.56
VPS29-202ENST00000447578 NAIF1Q69YI7 327 aaPredicted RBP5.33□□□□□ -1.56
VPS29-202ENST00000447578 FKBP9P1Q75LS8 142 aa5.33□□□□□ -1.56
VPS29-202ENST00000447578 NME9Q86XW9 330 aa5.33□□□□□ -1.56
VPS29-202ENST00000447578 SYNE4Q8N205 404 aa5.33□□□□□ -1.56
VPS29-202ENST00000447578 GPR101Q96P66 508 aaPredicted RBP5.33□□□□□ -1.56
VPS29-202ENST00000447578 UIMC1Q96RL1 719 aa5.33□□□□□ -1.56
VPS29-202ENST00000447578 NOL10Q9BSC4 688 aaKnown RBP5.33□□□□□ -1.56
VPS29-202ENST00000447578 ZNF768Q9H5H4 540 aaKnown RBP5.33□□□□□ -1.56
VPS29-202ENST00000447578 H2AFY2Q9P0M6 372 aaPredicted RBP5.33□□□□□ -1.56
VPS29-202ENST00000447578 B4GALT6Q9UBX8 382 aa5.33□□□□□ -1.56
VPS29-202ENST00000447578 ZNF180Q9UJW8 692 aa5.33□□□□□ -1.56
VPS29-202ENST00000447578 NOB1Q9ULX3 412 aaKnown RBP5.33□□□□□ -1.56
VPS29-202ENST00000447578 SYNPO2Q9UMS6 1093 aa5.33□□□□□ -1.56
VPS29-202ENST00000447578 APOBEC2Q9Y235 224 aaKnown RBP5.33□□□□□ -1.56
VPS29-202ENST00000447578 SYNJ1O43426 1573 aa5.33□□□□□ -1.56
VPS29-202ENST00000447578 GOLGA3Q08378 1498 aa5.32□□□□□ -1.56
VPS29-202ENST00000447578 TNKSO95271 1327 aa5.32□□□□□ -1.56
VPS29-202ENST00000447578 GOLGA6CA6NDK9 693 aa5.32□□□□□ -1.56
VPS29-202ENST00000447578 GOLGA6BA6NDN3 693 aa5.32□□□□□ -1.56
VPS29-202ENST00000447578 CBX4O00257 560 aa5.32□□□□□ -1.56
VPS29-202ENST00000447578 PLIN1O60240 522 aa5.32□□□□□ -1.56
VPS29-202ENST00000447578 OPHN1O60890 802 aa5.32□□□□□ -1.56
VPS29-202ENST00000447578 SCAF4O95104 1147 aaKnown RBP5.32□□□□□ -1.56
VPS29-202ENST00000447578 ABHD16AO95870 558 aa5.32□□□□□ -1.56
VPS29-202ENST00000447578 ITGB1P05556 798 aa5.32□□□□□ -1.56
VPS29-202ENST00000447578 GOLGA6DP0CG33 693 aa5.32□□□□□ -1.56
VPS29-202ENST00000447578 GAAP10253 952 aa5.32□□□□□ -1.56
VPS29-202ENST00000447578 ZSCAN20P17040 1043 aaPredicted RBP5.32□□□□□ -1.56
VPS29-202ENST00000447578 ADCYAP1R1P41586 468 aa5.32□□□□□ -1.56
VPS29-202ENST00000447578 FAPQ12884 760 aa5.32□□□□□ -1.56
VPS29-202ENST00000447578 PTPAQ15257 358 aa5.32□□□□□ -1.56
VPS29-202ENST00000447578 PTPN21Q16825 1174 aa5.32□□□□□ -1.56
VPS29-202ENST00000447578 ATP13A4Q4VNC1 1196 aa5.32□□□□□ -1.56
VPS29-202ENST00000447578 LY6G5CQ5SRR4 150 aa5.32□□□□□ -1.56
VPS29-202ENST00000447578 APBB1IPQ7Z5R6 666 aaPredicted RBP5.32□□□□□ -1.56
VPS29-202ENST00000447578 C11orf74Q86VG3 221 aa5.32□□□□□ -1.56
VPS29-202ENST00000447578 PHYKPLQ8IUZ5 450 aa5.32□□□□□ -1.56
VPS29-202ENST00000447578 C7orf31Q8N865 590 aa5.32□□□□□ -1.56
VPS29-202ENST00000447578 SMC1BQ8NDV3 1235 aa5.32□□□□□ -1.56
VPS29-202ENST00000447578 PIK3C3Q8NEB9 887 aa5.32□□□□□ -1.56
VPS29-202ENST00000447578 TTC8Q8TAM2 541 aa5.32□□□□□ -1.56
VPS29-202ENST00000447578 CDH19Q9H159 772 aa5.32□□□□□ -1.56
VPS29-202ENST00000447578 TOMM22Q9NS69 142 aa5.32□□□□□ -1.56
VPS29-202ENST00000447578 GOLGA6AQ9NYA3 693 aa5.32□□□□□ -1.56
VPS29-202ENST00000447578 GRID2IPA4D2P6 1211 aa5.31□□□□□ -1.56
VPS29-202ENST00000447578 HOXA3O43365 443 aaPredicted RBP5.31□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms