RNA–Protein interactions for RNA: ENST00000231656.12

CDX1-201, Transcript of caudal type homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDX1, Length 1,758 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-201ENST00000231656 MNS1Q8NEH6 495 aa24.59■■□□□ 1.53
CDX1-201ENST00000231656 HVCN1Q96D96 273 aa24.59■■□□□ 1.53
CDX1-201ENST00000231656 SETD4Q9NVD3 440 aa24.59■■□□□ 1.53
CDX1-201ENST00000231656 ARHGAP28Q9P2N2 729 aa24.59■■□□□ 1.53
CDX1-201ENST00000231656 SUCLA2Q9P2R7 463 aaPredicted RBP24.59■■□□□ 1.53
CDX1-201ENST00000231656 FHOD1Q9Y613 1164 aa24.59■■□□□ 1.53
CDX1-201ENST00000231656 SCN10AQ9Y5Y9 1956 aa24.59■■□□□ 1.53
CDX1-201ENST00000231656 RRN3P2A6NIE6 340 aa24.58■■□□□ 1.53
CDX1-201ENST00000231656 RBAK-RBAKDNI3L0D1 243 aa24.58■■□□□ 1.53
CDX1-201ENST00000231656 ZEB2O60315 1214 aa24.58■■□□□ 1.53
CDX1-201ENST00000231656 CLCN3P51790 818 aa24.58■■□□□ 1.53
CDX1-201ENST00000231656 CAPSQ13938 189 aa24.58■■□□□ 1.53
CDX1-201ENST00000231656 MXD4Q14582 209 aaPredicted RBP24.58■■□□□ 1.53
CDX1-201ENST00000231656 ELF2Q15723 593 aa24.58■■□□□ 1.53
CDX1-201ENST00000231656 LINC01465Q8N7H1 131 aa24.58■■□□□ 1.53
CDX1-201ENST00000231656 KLHDC9Q8NEP7 349 aa24.58■■□□□ 1.53
CDX1-201ENST00000231656 PPP1R13LQ8WUF5 828 aa24.58■■□□□ 1.53
CDX1-201ENST00000231656 LMBR1Q8WVP7 490 aa24.58■■□□□ 1.53
CDX1-201ENST00000231656 IFIH1Q9BYX4 1025 aaKnown RBP24.58■■□□□ 1.53
CDX1-201ENST00000231656 TSGA10Q9BZW7 698 aa24.58■■□□□ 1.53
CDX1-201ENST00000231656 HMX1Q9NP08 348 aaPredicted RBP24.58■■□□□ 1.53
CDX1-201ENST00000231656 MYO6Q9UM54 1294 aa24.58■■□□□ 1.53
CDX1-201ENST00000231656 PTPN22Q9Y2R2 807 aa24.58■■□□□ 1.53
CDX1-201ENST00000231656 NRCAMQ92823 1304 aa24.58■■□□□ 1.53
CDX1-201ENST00000231656 TRIP12Q14669 1992 aaPredicted RBP24.58■■□□□ 1.52
CDX1-201ENST00000231656 LRRIQ4A6NIV6 560 aa24.57■■□□□ 1.52
CDX1-201ENST00000231656 LAMTOR4Q0VGL1 99 aa24.57■■□□□ 1.52
CDX1-201ENST00000231656 KIF5AQ12840 1032 aa24.57■■□□□ 1.52
CDX1-201ENST00000231656 BFSP1Q12934 665 aa24.57■■□□□ 1.52
CDX1-201ENST00000231656 TUBB2AQ13885 445 aa24.57■■□□□ 1.52
CDX1-201ENST00000231656 ASIC2Q16515 512 aa24.57■■□□□ 1.52
CDX1-201ENST00000231656 TDRD12Q587J7 1177 aaKnown RBP24.57■■□□□ 1.52
CDX1-201ENST00000231656 EHBP1Q8NDI1 1231 aa24.57■■□□□ 1.52
CDX1-201ENST00000231656 CBWD1Q9BRT8 395 aa24.57■■□□□ 1.52
CDX1-201ENST00000231656 MTG1Q9BT17 334 aaPredicted RBP24.57■■□□□ 1.52
CDX1-201ENST00000231656 TUBB2BQ9BVA1 445 aa24.57■■□□□ 1.52
CDX1-201ENST00000231656 CDC23Q9UJX2 597 aa24.57■■□□□ 1.52
CDX1-201ENST00000231656 TBX20Q9UMR3 447 aa24.57■■□□□ 1.52
CDX1-201ENST00000231656 H0YCG3 227 aa24.57■■□□□ 1.52
CDX1-201ENST00000231656 CST5P28325 142 aaPredicted RBP24.57■■□□□ 1.52
CDX1-201ENST00000231656 CXCL17Q6UXB2 119 aa24.57■■□□□ 1.52
CDX1-201ENST00000231656 MTERF4Q7Z6M4 381 aaKnown RBP24.57■■□□□ 1.52
CDX1-201ENST00000231656 SH3TC2Q8TF17 1288 aa24.57■■□□□ 1.52
CDX1-201ENST00000231656 AJAP1Q9UKB5 411 aaPredicted RBP24.57■■□□□ 1.52
CDX1-201ENST00000231656 SIP14410 1827 aa24.56■■□□□ 1.52
CDX1-201ENST00000231656 GJB1P08034 283 aa24.56■■□□□ 1.52
CDX1-201ENST00000231656 TRIM49P0CI25 452 aa24.56■■□□□ 1.52
CDX1-201ENST00000231656 TRIM49CP0CI26 452 aa24.56■■□□□ 1.52
CDX1-201ENST00000231656 JAM2P57087 298 aa24.56■■□□□ 1.52
CDX1-201ENST00000231656 GFPT1Q06210 699 aaPredicted RBP24.56■■□□□ 1.52
CDX1-201ENST00000231656 ERCC6LQ2NKX8 1250 aa24.56■■□□□ 1.52
CDX1-201ENST00000231656 CBWD6Q4V339 395 aa24.56■■□□□ 1.52
CDX1-201ENST00000231656 CBWD3Q5JTY5 395 aa24.56■■□□□ 1.52
CDX1-201ENST00000231656 CBWD5Q5RIA9 395 aa24.56■■□□□ 1.52
CDX1-201ENST00000231656 CCSAPQ6IQ19 270 aaPredicted RBP24.56■■□□□ 1.52
CDX1-201ENST00000231656 RHPN2Q8IUC4 686 aa24.56■■□□□ 1.52
CDX1-201ENST00000231656 MAP4K3Q8IVH8 894 aa24.56■■□□□ 1.52
CDX1-201ENST00000231656 DEPTORQ8TB45 409 aa24.56■■□□□ 1.52
CDX1-201ENST00000231656 KCNN1Q92952 543 aa24.56■■□□□ 1.52
CDX1-201ENST00000231656 PCIF1Q9H4Z3 704 aa24.56■■□□□ 1.52
CDX1-201ENST00000231656 HSPBP1Q9NZL4 362 aa24.56■■□□□ 1.52
CDX1-201ENST00000231656 DUSP10Q9Y6W6 482 aa24.56■■□□□ 1.52
CDX1-201ENST00000231656 EFCAB8A8MWE9 144 aa24.55■■□□□ 1.52
CDX1-201ENST00000231656 MAPK13O15264 365 aa24.55■■□□□ 1.52
CDX1-201ENST00000231656 PJA2O43164 708 aa24.55■■□□□ 1.52
CDX1-201ENST00000231656 MSCO60682 206 aa24.55■■□□□ 1.52
CDX1-201ENST00000231656 MYCNP04198 464 aaPredicted RBP24.55■■□□□ 1.52
CDX1-201ENST00000231656 ABCD1P33897 745 aa24.55■■□□□ 1.52
CDX1-201ENST00000231656 AMPD2Q01433 879 aa24.55■■□□□ 1.52
CDX1-201ENST00000231656 KCNA10Q16322 511 aa24.55■■□□□ 1.52
CDX1-201ENST00000231656 TAS1R3Q7RTX0 852 aa24.55■■□□□ 1.52
CDX1-201ENST00000231656 IRF2BP2Q7Z5L9 587 aa24.55■■□□□ 1.52
CDX1-201ENST00000231656 XXYLT1Q8NBI6 393 aa24.55■■□□□ 1.52
CDX1-201ENST00000231656 MAP7D2Q96T17 732 aa24.55■■□□□ 1.52
CDX1-201ENST00000231656 EXOC7Q9UPT5 735 aa24.55■■□□□ 1.52
CDX1-201ENST00000231656 ASGR1P07306 291 aa24.54■■□□□ 1.52
CDX1-201ENST00000231656 SCP2P22307 547 aa24.54■■□□□ 1.52
CDX1-201ENST00000231656 TMOD1P28289 359 aa24.54■■□□□ 1.52
CDX1-201ENST00000231656 MAGEA1P43355 309 aa24.54■■□□□ 1.52
CDX1-201ENST00000231656 HIC1Q14526 733 aa24.54■■□□□ 1.52
CDX1-201ENST00000231656 FRMPD3Q5JV73 1810 aa24.54■■□□□ 1.52
CDX1-201ENST00000231656 NFRKBQ6P4R8 1299 aa24.54■■□□□ 1.52
CDX1-201ENST00000231656 INTS8Q75QN2 995 aaKnown RBP24.54■■□□□ 1.52
CDX1-201ENST00000231656 ASAP2O43150 1006 aa24.54■■□□□ 1.52
CDX1-201ENST00000231656 SRGAP2CP0DJJ0 459 aa24.54■■□□□ 1.52
CDX1-201ENST00000231656 MCCD1P59942 119 aaPredicted RBP24.54■■□□□ 1.52
CDX1-201ENST00000231656 ADAM17P78536 824 aa24.54■■□□□ 1.52
CDX1-201ENST00000231656 KLHL30Q0D2K2 578 aa24.54■■□□□ 1.52
CDX1-201ENST00000231656 LHX8Q68G74 356 aa24.54■■□□□ 1.52
CDX1-201ENST00000231656 IQCEQ6IPM2 695 aa24.54■■□□□ 1.52
CDX1-201ENST00000231656 RDH13Q8NBN7 331 aa24.54■■□□□ 1.52
CDX1-201ENST00000231656 RNF149Q8NC42 400 aa24.54■■□□□ 1.52
CDX1-201ENST00000231656 SPAG5Q96R06 1193 aa24.54■■□□□ 1.52
CDX1-201ENST00000231656 MBLAC1A4D2B0 266 aaPredicted RBP24.53■■□□□ 1.52
CDX1-201ENST00000231656 KRT13P13646 458 aa24.53■■□□□ 1.52
CDX1-201ENST00000231656 MYL7Q01449 175 aa24.53■■□□□ 1.52
CDX1-201ENST00000231656 RNF180Q86T96 592 aa24.53■■□□□ 1.52
CDX1-201ENST00000231656 C7orf31Q8N865 590 aa24.53■■□□□ 1.52
CDX1-201ENST00000231656 PCSK9Q8NBP7 692 aaKnown RBP24.53■■□□□ 1.52
CDX1-201ENST00000231656 HDAC6Q9UBN7 1215 aa24.53■■□□□ 1.52
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms