RNA–Protein interactions for RNA: ENST00000600733.5

SHKBP1-225, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5 BASIC

Gene SHKBP1, Length 2,284 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-225ENST00000600733 MXI1P50539 228 aa21.8■■□□□ 1.08
SHKBP1-225ENST00000600733 QPCTQ16769 361 aa21.8■■□□□ 1.08
SHKBP1-225ENST00000600733 BTBD6Q96KE9 485 aa21.8■■□□□ 1.08
SHKBP1-225ENST00000600733 KREMEN1Q96MU8 473 aa21.8■■□□□ 1.08
SHKBP1-225ENST00000600733 PSMD1Q99460 953 aa21.8■■□□□ 1.08
SHKBP1-225ENST00000600733 NOCTQ9UK39 431 aaKnown RBP21.8■■□□□ 1.08
SHKBP1-225ENST00000600733 PFASO15067 1338 aa21.79■■□□□ 1.08
SHKBP1-225ENST00000600733 MIF4GDA9UHW6 222 aaKnown RBP21.79■■□□□ 1.08
SHKBP1-225ENST00000600733 P4HA2O15460 535 aa21.79■■□□□ 1.08
SHKBP1-225ENST00000600733 CYP26A1O43174 497 aa21.79■■□□□ 1.08
SHKBP1-225ENST00000600733 RTN2O75298 545 aa21.79■■□□□ 1.08
SHKBP1-225ENST00000600733 HMGB2P26583 209 aaKnown RBP21.79■■□□□ 1.08
SHKBP1-225ENST00000600733 PTGIRP43119 386 aa21.79■■□□□ 1.08
SHKBP1-225ENST00000600733 QARSP47897 775 aaKnown RBP21.79■■□□□ 1.08
SHKBP1-225ENST00000600733 PEX3P56589 373 aa21.79■■□□□ 1.08
SHKBP1-225ENST00000600733 MAP2K1Q02750 393 aaPredicted RBP21.79■■□□□ 1.08
SHKBP1-225ENST00000600733 UGCGQ16739 394 aa21.79■■□□□ 1.08
SHKBP1-225ENST00000600733 TKFCQ3LXA3 575 aa21.79■■□□□ 1.08
SHKBP1-225ENST00000600733 RNF187Q5TA31 235 aaPredicted RBP21.79■■□□□ 1.08
SHKBP1-225ENST00000600733 TTC27Q6P3X3 843 aa21.79■■□□□ 1.08
SHKBP1-225ENST00000600733 RSBN1LQ6PCB5 846 aaPredicted RBP21.79■■□□□ 1.08
SHKBP1-225ENST00000600733 SLC47A2Q86VL8 602 aa21.79■■□□□ 1.08
SHKBP1-225ENST00000600733 C12orf56Q8IXR9 622 aa21.79■■□□□ 1.08
SHKBP1-225ENST00000600733 PPM1KQ8N3J5 372 aa21.79■■□□□ 1.08
SHKBP1-225ENST00000600733 RAPGEF5Q92565 580 aa21.79■■□□□ 1.08
SHKBP1-225ENST00000600733 AGO4Q9HCK5 861 aaKnown RBP21.79■■□□□ 1.08
SHKBP1-225ENST00000600733 DBR1Q9UK59 544 aaKnown RBP21.79■■□□□ 1.08
SHKBP1-225ENST00000600733 RPTORQ8N122 1335 aa21.79■■□□□ 1.08
SHKBP1-225ENST00000600733 ICAM1P05362 532 aa21.78■■□□□ 1.08
SHKBP1-225ENST00000600733 MAPTP10636 758 aaKnown RBP21.78■■□□□ 1.08
SHKBP1-225ENST00000600733 YWHABP31946 246 aaKnown RBP21.78■■□□□ 1.08
SHKBP1-225ENST00000600733 PTGER2P43116 358 aa21.78■■□□□ 1.08
SHKBP1-225ENST00000600733 PMS2P54278 862 aa21.78■■□□□ 1.08
SHKBP1-225ENST00000600733 MRPS9P82933 396 aaKnown RBP21.78■■□□□ 1.08
SHKBP1-225ENST00000600733 ALCAMQ13740 583 aa21.78■■□□□ 1.08
SHKBP1-225ENST00000600733 HOMER2Q9NSB8 354 aa21.78■■□□□ 1.08
SHKBP1-225ENST00000600733 GRHL1Q9NZI5 618 aa21.78■■□□□ 1.08
SHKBP1-225ENST00000600733 TCRBV7S2A1N4TA0A589 114 aa21.78■■□□□ 1.08
SHKBP1-225ENST00000600733 PLSCR1O15162 318 aa21.78■■□□□ 1.08
SHKBP1-225ENST00000600733 PEX5P50542 639 aa21.78■■□□□ 1.08
SHKBP1-225ENST00000600733 GTF2BQ00403 316 aa21.78■■□□□ 1.08
SHKBP1-225ENST00000600733 TNIP1Q15025 636 aa21.78■■□□□ 1.08
SHKBP1-225ENST00000600733 UBAP2Q5T6F2 1119 aaKnown RBP21.78■■□□□ 1.08
SHKBP1-225ENST00000600733 CBWD2Q8IUF1 395 aa21.78■■□□□ 1.08
SHKBP1-225ENST00000600733 FAM71AQ8IYT1 594 aa21.78■■□□□ 1.08
SHKBP1-225ENST00000600733 CPXCR1Q8N123 301 aa21.78■■□□□ 1.08
SHKBP1-225ENST00000600733 MDM1Q8TC05 714 aa21.78■■□□□ 1.08
SHKBP1-225ENST00000600733 CLEC4DQ8WXI8 215 aa21.78■■□□□ 1.08
SHKBP1-225ENST00000600733 SEMA4DQ92854 862 aa21.78■■□□□ 1.08
SHKBP1-225ENST00000600733 ELMO3Q96BJ8 720 aa21.78■■□□□ 1.08
SHKBP1-225ENST00000600733 MMEP08473 750 aa21.77■■□□□ 1.08
SHKBP1-225ENST00000600733 PYGMP11217 842 aa21.77■■□□□ 1.08
SHKBP1-225ENST00000600733 RPL21P46778 160 aaKnown RBP21.77■■□□□ 1.08
SHKBP1-225ENST00000600733 FNTAP49354 379 aa21.77■■□□□ 1.08
SHKBP1-225ENST00000600733 EIF3BP55884 814 aaKnown RBP21.77■■□□□ 1.08
SHKBP1-225ENST00000600733 SPDYE2Q495Y8 402 aa21.77■■□□□ 1.08
SHKBP1-225ENST00000600733 YTHDF3Q7Z739 585 aaKnown RBP21.77■■□□□ 1.08
SHKBP1-225ENST00000600733 RNF25Q96BH1 459 aaPredicted RBP21.77■■□□□ 1.08
SHKBP1-225ENST00000600733 CCDC127Q96BQ5 260 aa21.77■■□□□ 1.08
SHKBP1-225ENST00000600733 TLCD1Q96CP7 247 aa21.77■■□□□ 1.08
SHKBP1-225ENST00000600733 DEFB129Q9H1M3 183 aa21.77■■□□□ 1.08
SHKBP1-225ENST00000600733 PABPC3Q9H361 631 aaKnown RBP21.77■■□□□ 1.08
SHKBP1-225ENST00000600733 DDX20Q9UHI6 824 aaKnown RBP21.77■■□□□ 1.08
SHKBP1-225ENST00000600733 RASAL2Q9UJF2 1139 aa21.77■■□□□ 1.08
SHKBP1-225ENST00000600733 PNMA2Q9UL42 364 aa21.77■■□□□ 1.08
SHKBP1-225ENST00000600733 TRPC6Q9Y210 931 aa21.77■■□□□ 1.08
SHKBP1-225ENST00000600733 CHRNA3P32297 505 aa21.77■■□□□ 1.08
SHKBP1-225ENST00000600733 MTMR1Q13613 665 aa21.77■■□□□ 1.08
SHKBP1-225ENST00000600733 TCEAL1Q15170 157 aa21.77■■□□□ 1.08
SHKBP1-225ENST00000600733 CLUL1Q15846 466 aa21.77■■□□□ 1.08
SHKBP1-225ENST00000600733 TMEM174Q8WUU8 243 aa21.77■■□□□ 1.08
SHKBP1-225ENST00000600733 SAAL1Q96ER3 474 aa21.77■■□□□ 1.08
SHKBP1-225ENST00000600733 PAEPP09466 180 aa21.76■■□□□ 1.07
SHKBP1-225ENST00000600733 CTNNA2P26232 953 aa21.76■■□□□ 1.07
SHKBP1-225ENST00000600733 RASA3Q14644 834 aa21.76■■□□□ 1.07
SHKBP1-225ENST00000600733 SPDYCQ5MJ68 293 aa21.76■■□□□ 1.07
SHKBP1-225ENST00000600733 PLA2G4FQ68DD2 849 aa21.76■■□□□ 1.07
SHKBP1-225ENST00000600733 CCDC137Q6PK04 289 aaKnown RBP21.76■■□□□ 1.07
SHKBP1-225ENST00000600733 C6orf89Q6UWU4 347 aa21.76■■□□□ 1.07
SHKBP1-225ENST00000600733 RPS6KC1Q96S38 1066 aa21.76■■□□□ 1.07
SHKBP1-225ENST00000600733 POP1Q99575 1024 aaKnown RBP21.76■■□□□ 1.07
SHKBP1-225ENST00000600733 KIFC3Q9BVG8 833 aa21.76■■□□□ 1.07
SHKBP1-225ENST00000600733 SLTMQ9NWH9 1034 aaKnown RBP eCLIP21.76■■□□□ 1.07
SHKBP1-225ENST00000600733 SCAF8Q9UPN6 1271 aaKnown RBP21.76■■□□□ 1.07
SHKBP1-225ENST00000600733 UBIAD1Q9Y5Z9 338 aa21.76■■□□□ 1.07
SHKBP1-225ENST00000600733 ASTN2O75129 1339 aaPredicted RBP21.76■■□□□ 1.07
SHKBP1-225ENST00000600733 FSBPO95073 299 aa21.76■■□□□ 1.07
SHKBP1-225ENST00000600733 NUDT17P0C025 328 aa21.76■■□□□ 1.07
SHKBP1-225ENST00000600733 ADSSP30520 456 aa21.76■■□□□ 1.07
SHKBP1-225ENST00000600733 DRG2P55039 364 aaKnown RBP21.76■■□□□ 1.07
SHKBP1-225ENST00000600733 FMO1Q01740 532 aa21.76■■□□□ 1.07
SHKBP1-225ENST00000600733 DGKZQ13574 1117 aa21.76■■□□□ 1.07
SHKBP1-225ENST00000600733 SEL1L2Q5TEA6 688 aa21.76■■□□□ 1.07
SHKBP1-225ENST00000600733 MMS22LQ6ZRQ5 1243 aa21.76■■□□□ 1.07
SHKBP1-225ENST00000600733 OGFOD1Q8N543 542 aa21.76■■□□□ 1.07
SHKBP1-225ENST00000600733 CD101Q93033 1021 aa21.76■■□□□ 1.07
SHKBP1-225ENST00000600733 VTI1AQ96AJ9 217 aa21.76■■□□□ 1.07
SHKBP1-225ENST00000600733 NUP85Q9BW27 656 aa21.76■■□□□ 1.07
SHKBP1-225ENST00000600733 ZNF341Q9BYN7 854 aa21.76■■□□□ 1.07
SHKBP1-225ENST00000600733 PCYOX1Q9UHG3 505 aa21.76■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms