RNA–Protein interactions for RNA: ENST00000597968.1

TRIM28-211, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 504 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-211ENST00000597968 PIEZO1Q92508 2521 aa15.14■□□□□ 0.01
TRIM28-211ENST00000597968 TECTAO75443 2155 aa15.14■□□□□ 0.01
TRIM28-211ENST00000597968 ZNF318Q5VUA4 2279 aa15.13■□□□□ 0.01
TRIM28-211ENST00000597968 NRP1O14786 923 aa15.13■□□□□ 0.01
TRIM28-211ENST00000597968 DDHD2O94830 711 aa15.13■□□□□ 0.01
TRIM28-211ENST00000597968 CLCN4P51793 760 aa15.13■□□□□ 0.01
TRIM28-211ENST00000597968 DSC1Q08554 894 aa15.13■□□□□ 0.01
TRIM28-211ENST00000597968 SAFBQ15424 915 aaKnown RBP eCLIP15.13■□□□□ 0.01
TRIM28-211ENST00000597968 GPR149Q86SP6 731 aa15.13■□□□□ 0.01
TRIM28-211ENST00000597968 RNF168Q8IYW5 571 aaPredicted RBP15.13■□□□□ 0.01
TRIM28-211ENST00000597968 TDRD5Q8NAT2 981 aaKnown RBP15.13■□□□□ 0.01
TRIM28-211ENST00000597968 SMG8Q8ND04 991 aaKnown RBP15.13■□□□□ 0.01
TRIM28-211ENST00000597968 MCPH1Q8NEM0 835 aa15.13■□□□□ 0.01
TRIM28-211ENST00000597968 ACSF2Q96CM8 615 aaPredicted RBP15.13■□□□□ 0.01
TRIM28-211ENST00000597968 TUFT1Q9NNX1 390 aa15.13■□□□□ 0.01
TRIM28-211ENST00000597968 A0A1B0GUA9 196 aa15.12■□□□□ 0.01
TRIM28-211ENST00000597968 ARL5CA6NH57 179 aa15.12■□□□□ 0.01
TRIM28-211ENST00000597968 BTBD18B2RXH4 712 aa15.12■□□□□ 0.01
TRIM28-211ENST00000597968 C2CD4DB7Z1M9 353 aa15.12■□□□□ 0.01
TRIM28-211ENST00000597968 INO80B-WBP1J3KQ70 363 aa15.12■□□□□ 0.01
TRIM28-211ENST00000597968 PAPLNO95428 1278 aa15.12■□□□□ 0.01
TRIM28-211ENST00000597968 EFEMP2O95967 443 aa15.12■□□□□ 0.01
TRIM28-211ENST00000597968 URODP06132 367 aa15.12■□□□□ 0.01
TRIM28-211ENST00000597968 ADH1AP07327 375 aa15.12■□□□□ 0.01
TRIM28-211ENST00000597968 KLRC2P26717 231 aa15.12■□□□□ 0.01
TRIM28-211ENST00000597968 MRE11P49959 708 aa15.12■□□□□ 0.01
TRIM28-211ENST00000597968 NEK4P51957 841 aa15.12■□□□□ 0.01
TRIM28-211ENST00000597968 CREMQ03060 361 aa15.12■□□□□ 0.01
TRIM28-211ENST00000597968 MBTD1Q05BQ5 628 aa15.12■□□□□ 0.01
TRIM28-211ENST00000597968 SLC27A1Q6PCB7 646 aa15.12■□□□□ 0.01
TRIM28-211ENST00000597968 PPP4R3CPQ6ZMV5 832 aa15.12■□□□□ 0.01
TRIM28-211ENST00000597968 OTOP3Q7RTS5 596 aa15.12■□□□□ 0.01
TRIM28-211ENST00000597968 ALYREFQ86V81 257 aaKnown RBP15.12■□□□□ 0.01
TRIM28-211ENST00000597968 COLGALT2Q8IYK4 626 aa15.12■□□□□ 0.01
TRIM28-211ENST00000597968 KREMEN2Q8NCW0 462 aa15.12■□□□□ 0.01
TRIM28-211ENST00000597968 BCL7CQ8WUZ0 217 aaPredicted RBP15.12■□□□□ 0.01
TRIM28-211ENST00000597968 KLHL5Q96PQ7 755 aa15.12■□□□□ 0.01
TRIM28-211ENST00000597968 RPS6KC1Q96S38 1066 aa15.12■□□□□ 0.01
TRIM28-211ENST00000597968 LLPHQ9BRT6 129 aaKnown RBP15.12■□□□□ 0.01
TRIM28-211ENST00000597968 HERC2P3Q9BVR0 1158 aa15.12■□□□□ 0.01
TRIM28-211ENST00000597968 TRIM6Q9C030 488 aaPredicted RBP15.12■□□□□ 0.01
TRIM28-211ENST00000597968 GBP3Q9H0R5 595 aa15.12■□□□□ 0.01
TRIM28-211ENST00000597968 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP15.12■□□□□ 0.01
TRIM28-211ENST00000597968 DBR1Q9UK59 544 aaKnown RBP15.12■□□□□ 0.01
TRIM28-211ENST00000597968 SEC24BO95487 1268 aa15.11■□□□□ 0.01
TRIM28-211ENST00000597968 POMCP01189 267 aa15.11■□□□□ 0.01
TRIM28-211ENST00000597968 CNPP09543 421 aaKnown RBP15.11■□□□□ 0.01
TRIM28-211ENST00000597968 EPCAMP16422 314 aa15.11■□□□□ 0.01
TRIM28-211ENST00000597968 AVPR2P30518 371 aa15.11■□□□□ 0.01
TRIM28-211ENST00000597968 TXKP42681 527 aa15.11■□□□□ 0.01
TRIM28-211ENST00000597968 CAPSQ13938 189 aa15.11■□□□□ 0.01
TRIM28-211ENST00000597968 AMHR2Q16671 573 aa15.11■□□□□ 0.01
TRIM28-211ENST00000597968 FAM187BQ17R55 369 aa15.11■□□□□ 0.01
TRIM28-211ENST00000597968 LONRF3Q496Y0 759 aa15.11■□□□□ 0.01
TRIM28-211ENST00000597968 RARS2Q5T160 578 aaKnown RBP15.11■□□□□ 0.01
TRIM28-211ENST00000597968 CCDC149Q6ZUS6 474 aa15.11■□□□□ 0.01
TRIM28-211ENST00000597968 NACC1Q96RE7 527 aa15.11■□□□□ 0.01
TRIM28-211ENST00000597968 POLR3CQ9BUI4 534 aaPredicted RBP15.11■□□□□ 0.01
TRIM28-211ENST00000597968 COLEC11Q9BWP8 271 aa15.11■□□□□ 0.01
TRIM28-211ENST00000597968 APOL5Q9BWW9 433 aa15.11■□□□□ 0.01
TRIM28-211ENST00000597968 VN1R3Q9BXE9 311 aa15.11■□□□□ 0.01
TRIM28-211ENST00000597968 C2orf40Q9H1Z8 148 aa15.11■□□□□ 0.01
TRIM28-211ENST00000597968 RXFP1Q9HBX9 757 aa15.11■□□□□ 0.01
TRIM28-211ENST00000597968 TSHZ2Q9NRE2 1034 aa15.11■□□□□ 0.01
TRIM28-211ENST00000597968 PRMT7Q9NVM4 692 aaPredicted RBP15.11■□□□□ 0.01
TRIM28-211ENST00000597968 STK24Q9Y6E0 443 aa15.11■□□□□ 0.01
TRIM28-211ENST00000597968 ZBTB39O15060 712 aa15.1■□□□□ 0.01
TRIM28-211ENST00000597968 ARF4P18085 180 aaPredicted RBP15.1■□□□□ 0.01
TRIM28-211ENST00000597968 GLRA2P23416 452 aa15.1■□□□□ 0.01
TRIM28-211ENST00000597968 DSG1Q02413 1049 aa15.1■□□□□ 0.01
TRIM28-211ENST00000597968 GRIK3Q13003 919 aa15.1■□□□□ 0.01
TRIM28-211ENST00000597968 NECAB1Q8N987 351 aa15.1■□□□□ 0.01
TRIM28-211ENST00000597968 ERMNQ8TAM6 284 aa15.1■□□□□ 0.01
TRIM28-211ENST00000597968 AUTS2Q8WXX7 1259 aa15.1■□□□□ 0.01
TRIM28-211ENST00000597968 STAMQ92783 540 aa15.1■□□□□ 0.01
TRIM28-211ENST00000597968 FOXP1Q9H334 677 aaPredicted RBP15.1■□□□□ 0.01
TRIM28-211ENST00000597968 PLEKHA4Q9H4M7 779 aa15.1■□□□□ 0.01
TRIM28-211ENST00000597968 CHST7Q9NS84 486 aa15.1■□□□□ 0.01
TRIM28-211ENST00000597968 MARCH5Q9NX47 278 aa15.1■□□□□ 0.01
TRIM28-211ENST00000597968 FAM205CA6NFA0 338 aa15.09■□□□□ 0.01
TRIM28-211ENST00000597968 B4GALT3O60512 393 aa15.09■□□□□ 0.01
TRIM28-211ENST00000597968 RPA1P27694 616 aa15.09■□□□□ 0.01
TRIM28-211ENST00000597968 MLH1P40692 756 aa15.09■□□□□ 0.01
TRIM28-211ENST00000597968 OR1G1P47890 313 aa15.09■□□□□ 0.01
TRIM28-211ENST00000597968 TRAPPC10P48553 1259 aa15.09■□□□□ 0.01
TRIM28-211ENST00000597968 GLUD2P49448 558 aa15.09■□□□□ 0.01
TRIM28-211ENST00000597968 AFF1P51825 1210 aaKnown RBP15.09■□□□□ 0.01
TRIM28-211ENST00000597968 HMGN5P82970 282 aaKnown RBP15.09■□□□□ 0.01
TRIM28-211ENST00000597968 KIAA0319Q5VV43 1072 aa15.09■□□□□ 0.01
TRIM28-211ENST00000597968 CDCA2Q69YH5 1023 aaPredicted RBP15.09■□□□□ 0.01
TRIM28-211ENST00000597968 ZBTB8OSQ8IWT0 167 aa15.09■□□□□ 0.01
TRIM28-211ENST00000597968 PRSS33Q8NF86 280 aa15.09■□□□□ 0.01
TRIM28-211ENST00000597968 NXPE3Q969Y0 559 aa15.09■□□□□ 0.01
TRIM28-211ENST00000597968 GAD1Q99259 594 aa15.09■□□□□ 0.01
TRIM28-211ENST00000597968 EIF2AQ9BY44 585 aaKnown RBP15.09■□□□□ 0.01
TRIM28-211ENST00000597968 BMP2KQ9NSY1 1161 aaPredicted RBP15.09■□□□□ 0.01
TRIM28-211ENST00000597968 FNIP2Q9P278 1114 aa15.09■□□□□ 0.01
TRIM28-211ENST00000597968 LIMCH1Q9UPQ0 1083 aa15.09■□□□□ 0.01
TRIM28-211ENST00000597968 ARID2Q68CP9 1835 aa15.08■□□□□ 0.01
TRIM28-211ENST00000597968 SPDYE4A6NLX3 237 aa15.08■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 488 ms