RNA–Protein interactions for RNA: ENST00000560173.1

LDLR-211, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 389 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-211ENST00000560173 GLB1LQ6UWU2 654 aa10.31□□□□□ -0.76
LDLR-211ENST00000560173 AGMOQ6ZNB7 445 aa10.31□□□□□ -0.76
LDLR-211ENST00000560173 TAS1R3Q7RTX0 852 aa10.31□□□□□ -0.76
LDLR-211ENST00000560173 CDR2LQ86X02 465 aaPredicted RBP10.31□□□□□ -0.76
LDLR-211ENST00000560173 ABI1Q8IZP0 508 aa10.31□□□□□ -0.76
LDLR-211ENST00000560173 LRRC43Q8N309 656 aa10.31□□□□□ -0.76
LDLR-211ENST00000560173 PDILTQ8N807 584 aa10.31□□□□□ -0.76
LDLR-211ENST00000560173 TMEM161BQ8NDZ6 487 aa10.31□□□□□ -0.76
LDLR-211ENST00000560173 HELQQ8TDG4 1101 aa10.31□□□□□ -0.76
LDLR-211ENST00000560173 ADAMTS19Q8TE59 1207 aa10.31□□□□□ -0.76
LDLR-211ENST00000560173 ATXN2LQ8WWM7 1075 aaKnown RBP10.31□□□□□ -0.76
LDLR-211ENST00000560173 RSPH1Q8WYR4 309 aa10.31□□□□□ -0.76
LDLR-211ENST00000560173 KCNN1Q92952 543 aa10.31□□□□□ -0.76
LDLR-211ENST00000560173 PGBD4Q96DM1 585 aa10.31□□□□□ -0.76
LDLR-211ENST00000560173 SPATA32Q96LK8 384 aa10.31□□□□□ -0.76
LDLR-211ENST00000560173 PANK2Q9BZ23 570 aa10.31□□□□□ -0.76
LDLR-211ENST00000560173 PDZD7Q9H5P4 517 aa10.31□□□□□ -0.76
LDLR-211ENST00000560173 TMEM134Q9H6X4 195 aa10.31□□□□□ -0.76
LDLR-211ENST00000560173 PARVGQ9HBI0 331 aa10.31□□□□□ -0.76
LDLR-211ENST00000560173 LARSQ9P2J5 1176 aaKnown RBP10.31□□□□□ -0.76
LDLR-211ENST00000560173 HCSTQ9UBK5 93 aa10.31□□□□□ -0.76
LDLR-211ENST00000560173 KCNG1Q9UIX4 513 aa10.31□□□□□ -0.76
LDLR-211ENST00000560173 USP20Q9Y2K6 914 aa10.31□□□□□ -0.76
LDLR-211ENST00000560173 IPPQ9Y573 584 aa10.31□□□□□ -0.76
LDLR-211ENST00000560173 TCF20Q9UGU0 1960 aaKnown RBP10.31□□□□□ -0.76
LDLR-211ENST00000560173 MYO7AQ13402 2215 aa10.31□□□□□ -0.76
LDLR-211ENST00000560173 RALGAPA2Q2PPJ7 1873 aa10.31□□□□□ -0.76
LDLR-211ENST00000560173 BRWD1Q9NSI6 2320 aa10.3□□□□□ -0.76
LDLR-211ENST00000560173 NLRC5Q86WI3 1866 aa10.3□□□□□ -0.76
LDLR-211ENST00000560173 MYMKA6NI61 221 aa10.3□□□□□ -0.76
LDLR-211ENST00000560173 H3BNC9 293 aa10.3□□□□□ -0.76
LDLR-211ENST00000560173 K7ERI5 159 aa10.3□□□□□ -0.76
LDLR-211ENST00000560173 N4BP3O15049 544 aa10.3□□□□□ -0.76
LDLR-211ENST00000560173 OFD1O75665 1012 aa10.3□□□□□ -0.76
LDLR-211ENST00000560173 FAM13AO94988 1023 aa10.3□□□□□ -0.76
LDLR-211ENST00000560173 NPTXRO95502 500 aa10.3□□□□□ -0.76
LDLR-211ENST00000560173 RB1P06400 928 aa10.3□□□□□ -0.76
LDLR-211ENST00000560173 MAPTP10636 758 aaKnown RBP10.3□□□□□ -0.76
LDLR-211ENST00000560173 SMTNP53814 917 aa10.3□□□□□ -0.76
LDLR-211ENST00000560173 NCKAP1LP55160 1127 aa10.3□□□□□ -0.76
LDLR-211ENST00000560173 EEF1DP3Q658K8 133 aa10.3□□□□□ -0.76
LDLR-211ENST00000560173 LRRC55Q6ZSA7 311 aa10.3□□□□□ -0.76
LDLR-211ENST00000560173 SV2BQ7L1I2 683 aa10.3□□□□□ -0.76
LDLR-211ENST00000560173 CNNM3Q8NE01 707 aa10.3□□□□□ -0.76
LDLR-211ENST00000560173 DDX12PQ92771 950 aa10.3□□□□□ -0.76
LDLR-211ENST00000560173 DNAJC19Q96DA6 116 aa10.3□□□□□ -0.76
LDLR-211ENST00000560173 ASB2Q96Q27 587 aa10.3□□□□□ -0.76
LDLR-211ENST00000560173 FIZ1Q96SL8 496 aa10.3□□□□□ -0.76
LDLR-211ENST00000560173 C11orf84Q9BUA3 381 aaPredicted RBP10.3□□□□□ -0.76
LDLR-211ENST00000560173 PLVAPQ9BX97 442 aa10.3□□□□□ -0.76
LDLR-211ENST00000560173 MRPL9Q9BYD2 267 aaKnown RBP10.3□□□□□ -0.76
LDLR-211ENST00000560173 SCAND2PQ9GZW5 306 aaPredicted RBP10.3□□□□□ -0.76
LDLR-211ENST00000560173 RNF39Q9H2S5 420 aa10.3□□□□□ -0.76
LDLR-211ENST00000560173 CUEDC2Q9H467 287 aa10.3□□□□□ -0.76
LDLR-211ENST00000560173 NXF3Q9H4D5 531 aaKnown RBP10.3□□□□□ -0.76
LDLR-211ENST00000560173 CWH43Q9H720 699 aa10.3□□□□□ -0.76
LDLR-211ENST00000560173 RSAD1Q9HA92 442 aa10.3□□□□□ -0.76
LDLR-211ENST00000560173 RTN4Q9NQC3 1192 aaKnown RBP10.3□□□□□ -0.76
LDLR-211ENST00000560173 TYW1Q9NV66 732 aaKnown RBP10.3□□□□□ -0.76
LDLR-211ENST00000560173 HES2Q9Y543 173 aa10.3□□□□□ -0.76
LDLR-211ENST00000560173 MTCH2Q9Y6C9 303 aa10.3□□□□□ -0.76
LDLR-211ENST00000560173 KIAA1671Q9BY89 1806 aa10.3□□□□□ -0.76
LDLR-211ENST00000560173 MYH11P35749 1972 aa10.29□□□□□ -0.76
LDLR-211ENST00000560173 H0YCG3 227 aa10.29□□□□□ -0.76
LDLR-211ENST00000560173 INPPL1O15357 1258 aa10.29□□□□□ -0.76
LDLR-211ENST00000560173 ITGA4P13612 1032 aa10.29□□□□□ -0.76
LDLR-211ENST00000560173 LAG3P18627 525 aa10.29□□□□□ -0.76
LDLR-211ENST00000560173 IGFBP4P22692 258 aa10.29□□□□□ -0.76
LDLR-211ENST00000560173 GPM6BQ13491 265 aa10.29□□□□□ -0.76
LDLR-211ENST00000560173 TMEM132AQ24JP5 1023 aa10.29□□□□□ -0.76
LDLR-211ENST00000560173 NOMO2Q5JPE7 1267 aa10.29□□□□□ -0.76
LDLR-211ENST00000560173 ATF7IP2Q5U623 682 aa10.29□□□□□ -0.76
LDLR-211ENST00000560173 DYMQ7RTS9 669 aa10.29□□□□□ -0.76
LDLR-211ENST00000560173 MYCT1Q8N699 235 aa10.29□□□□□ -0.76
LDLR-211ENST00000560173 IQUBQ8NA54 791 aa10.29□□□□□ -0.76
LDLR-211ENST00000560173 COLGALT1Q8NBJ5 622 aa10.29□□□□□ -0.76
LDLR-211ENST00000560173 P2RX5Q93086 422 aa10.29□□□□□ -0.76
LDLR-211ENST00000560173 DHX58Q96C10 678 aa10.29□□□□□ -0.76
LDLR-211ENST00000560173 UHRF1Q96T88 793 aaPredicted RBP10.29□□□□□ -0.76
LDLR-211ENST00000560173 ACO2Q99798 780 aaKnown RBP10.29□□□□□ -0.76
LDLR-211ENST00000560173 MRPL4Q9BYD3 311 aaKnown RBP10.29□□□□□ -0.76
LDLR-211ENST00000560173 TRIM6Q9C030 488 aaPredicted RBP10.29□□□□□ -0.76
LDLR-211ENST00000560173 TNMDQ9H2S6 317 aa10.29□□□□□ -0.76
LDLR-211ENST00000560173 UBN1Q9NPG3 1134 aa10.29□□□□□ -0.76
LDLR-211ENST00000560173 TBC1D13Q9NVG8 400 aa10.29□□□□□ -0.76
LDLR-211ENST00000560173 KBTBD4Q9NVX7 518 aa10.29□□□□□ -0.76
LDLR-211ENST00000560173 FAM13BQ9NYF5 915 aa10.29□□□□□ -0.76
LDLR-211ENST00000560173 LMCD1Q9NZU5 365 aa10.29□□□□□ -0.76
LDLR-211ENST00000560173 THEGQ9P2T0 379 aa10.29□□□□□ -0.76
LDLR-211ENST00000560173 TNFSF13BQ9Y275 285 aa10.29□□□□□ -0.76
LDLR-211ENST00000560173 INPP5FQ9Y2H2 1132 aa10.29□□□□□ -0.76
LDLR-211ENST00000560173 NCOR1O75376 2440 aa10.28□□□□□ -0.76
LDLR-211ENST00000560173 ZMYM2Q9UBW7 1377 aa10.28□□□□□ -0.76
LDLR-211ENST00000560173 FRMD3A2A2Y4 597 aa10.28□□□□□ -0.76
LDLR-211ENST00000560173 ARL5CA6NH57 179 aa10.28□□□□□ -0.76
LDLR-211ENST00000560173 K7ENM7 598 aa10.28□□□□□ -0.76
LDLR-211ENST00000560173 ABLIM1O14639 778 aa10.28□□□□□ -0.76
LDLR-211ENST00000560173 GRM6O15303 877 aa10.28□□□□□ -0.76
LDLR-211ENST00000560173 POLR2DO15514 142 aaKnown RBP10.28□□□□□ -0.76
LDLR-211ENST00000560173 GTPBP6O43824 516 aaPredicted RBP10.28□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 63 ms