RNA–Protein interactions for RNA: ENST00000559898.5

HDDC3-205, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,024 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-205ENST00000559898 KIFC3Q9BVG8 833 aa19.68■□□□□ 0.74
HDDC3-205ENST00000559898 MARCH5Q9NX47 278 aa19.68■□□□□ 0.74
HDDC3-205ENST00000559898 KLK14Q9P0G3 267 aa19.68■□□□□ 0.74
HDDC3-205ENST00000559898 DBR1Q9UK59 544 aaKnown RBP19.68■□□□□ 0.74
HDDC3-205ENST00000559898 FAM50BQ9Y247 325 aa19.68■□□□□ 0.74
HDDC3-205ENST00000559898 HCFC2Q9Y5Z7 792 aa19.68■□□□□ 0.74
HDDC3-205ENST00000559898 PLXNA3P51805 1871 aa19.67■□□□□ 0.74
HDDC3-205ENST00000559898 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP19.67■□□□□ 0.74
HDDC3-205ENST00000559898 ARL5CA6NH57 179 aa19.67■□□□□ 0.74
HDDC3-205ENST00000559898 NRP1O14786 923 aa19.67■□□□□ 0.74
HDDC3-205ENST00000559898 XRCC6P12956 609 aaKnown RBP eCLIP19.67■□□□□ 0.74
HDDC3-205ENST00000559898 EPCAMP16422 314 aa19.67■□□□□ 0.74
HDDC3-205ENST00000559898 POU5F1BQ06416 359 aa19.67■□□□□ 0.74
HDDC3-205ENST00000559898 TFDP1Q14186 410 aa19.67■□□□□ 0.74
HDDC3-205ENST00000559898 NOTUMQ6P988 496 aa19.67■□□□□ 0.74
HDDC3-205ENST00000559898 DDX53Q86TM3 631 aaKnown RBP19.67■□□□□ 0.74
HDDC3-205ENST00000559898 GSTCDQ8NEC7 633 aa19.67■□□□□ 0.74
HDDC3-205ENST00000559898 PRG3Q9Y2Y8 225 aaPredicted RBP19.67■□□□□ 0.74
HDDC3-205ENST00000559898 LOC730098B7Z3J9 87 aa19.66■□□□□ 0.74
HDDC3-205ENST00000559898 DCXO43602 365 aa19.66■□□□□ 0.74
HDDC3-205ENST00000559898 CTSAP10619 480 aa19.66■□□□□ 0.74
HDDC3-205ENST00000559898 CCT6AP40227 531 aaKnown RBP19.66■□□□□ 0.74
HDDC3-205ENST00000559898 FXR2P51116 673 aaKnown RBP eCLIP19.66■□□□□ 0.74
HDDC3-205ENST00000559898 CDCA2Q69YH5 1023 aaPredicted RBP19.66■□□□□ 0.74
HDDC3-205ENST00000559898 KCNK18Q7Z418 384 aa19.66■□□□□ 0.74
HDDC3-205ENST00000559898 COLGALT2Q8IYK4 626 aa19.66■□□□□ 0.74
HDDC3-205ENST00000559898 URGCPQ8TCY9 931 aa19.66■□□□□ 0.74
HDDC3-205ENST00000559898 RPGRIP1Q96KN7 1286 aa19.66■□□□□ 0.74
HDDC3-205ENST00000559898 NACC1Q96RE7 527 aa19.66■□□□□ 0.74
HDDC3-205ENST00000559898 MMTAG2Q9BU76 263 aaKnown RBP19.66■□□□□ 0.74
HDDC3-205ENST00000559898 E9PMD0 336 aa19.65■□□□□ 0.74
HDDC3-205ENST00000559898 LIG1P18858 919 aa19.65■□□□□ 0.74
HDDC3-205ENST00000559898 CYP11B2P19099 503 aa19.65■□□□□ 0.74
HDDC3-205ENST00000559898 GJB2P29033 226 aa19.65■□□□□ 0.74
HDDC3-205ENST00000559898 AXLP30530 894 aa19.65■□□□□ 0.74
HDDC3-205ENST00000559898 PTPN14Q15678 1187 aa19.65■□□□□ 0.74
HDDC3-205ENST00000559898 EEF1DP3Q658K8 133 aa19.65■□□□□ 0.74
HDDC3-205ENST00000559898 SLC22A17Q8WUG5 538 aa19.65■□□□□ 0.74
HDDC3-205ENST00000559898 NFKBIZQ9BYH8 718 aa19.65■□□□□ 0.74
HDDC3-205ENST00000559898 BHMT2Q9H2M3 363 aa19.65■□□□□ 0.74
HDDC3-205ENST00000559898 EIF4ENIF1Q9NRA8 985 aaKnown RBP19.65■□□□□ 0.74
HDDC3-205ENST00000559898 LRWD1Q9UFC0 647 aa19.65■□□□□ 0.74
HDDC3-205ENST00000559898 KIAA1024Q9UPX6 916 aa19.65■□□□□ 0.74
HDDC3-205ENST00000559898 CNTNAP2Q9UHC6 1331 aa19.65■□□□□ 0.74
HDDC3-205ENST00000559898 A0A1B0GUA9 196 aa19.64■□□□□ 0.73
HDDC3-205ENST00000559898 ARHGEF35A5YM69 484 aa19.64■□□□□ 0.73
HDDC3-205ENST00000559898 MYBP10242 640 aa19.64■□□□□ 0.73
HDDC3-205ENST00000559898 TRAPPC10P48553 1259 aa19.64■□□□□ 0.73
HDDC3-205ENST00000559898 DSC1Q08554 894 aa19.64■□□□□ 0.73
HDDC3-205ENST00000559898 ORC2Q13416 577 aaPredicted RBP19.64■□□□□ 0.73
HDDC3-205ENST00000559898 MCTP1Q6DN14 999 aa19.64■□□□□ 0.73
HDDC3-205ENST00000559898 IGSF22Q8N9C0 903 aa19.64■□□□□ 0.73
HDDC3-205ENST00000559898 B3GALT6Q96L58 329 aa19.64■□□□□ 0.73
HDDC3-205ENST00000559898 CCDC113Q9H0I3 377 aa19.64■□□□□ 0.73
HDDC3-205ENST00000559898 FZD8Q9H461 694 aa19.64■□□□□ 0.73
HDDC3-205ENST00000559898 PDZD7Q9H5P4 517 aa19.64■□□□□ 0.73
HDDC3-205ENST00000559898 DDX19AQ9NUU7 478 aaKnown RBP19.64■□□□□ 0.73
HDDC3-205ENST00000559898 NOL7Q9UMY1 257 aaKnown RBP19.64■□□□□ 0.73
HDDC3-205ENST00000559898 FAN1Q9Y2M0 1017 aa19.64■□□□□ 0.73
HDDC3-205ENST00000559898 TRIP11Q15643 1979 aa19.64■□□□□ 0.73
HDDC3-205ENST00000559898 C2orf16Q68DN1 1984 aa19.64■□□□□ 0.73
HDDC3-205ENST00000559898 TECTAO75443 2155 aa19.63■□□□□ 0.73
HDDC3-205ENST00000559898 INPPL1O15357 1258 aa19.63■□□□□ 0.73
HDDC3-205ENST00000559898 LILRB3O75022 631 aa19.63■□□□□ 0.73
HDDC3-205ENST00000559898 EFEMP2O95967 443 aa19.63■□□□□ 0.73
HDDC3-205ENST00000559898 IGFBP6P24592 240 aaPredicted RBP19.63■□□□□ 0.73
HDDC3-205ENST00000559898 OR1G1P47890 313 aa19.63■□□□□ 0.73
HDDC3-205ENST00000559898 RARS2Q5T160 578 aaKnown RBP19.63■□□□□ 0.73
HDDC3-205ENST00000559898 SLC27A1Q6PCB7 646 aa19.63■□□□□ 0.73
HDDC3-205ENST00000559898 MCPH1Q8NEM0 835 aa19.63■□□□□ 0.73
HDDC3-205ENST00000559898 ERMNQ8TAM6 284 aa19.63■□□□□ 0.73
HDDC3-205ENST00000559898 SNX29Q8TEQ0 813 aa19.63■□□□□ 0.73
HDDC3-205ENST00000559898 TBC1D32Q96NH3 1257 aa19.63■□□□□ 0.73
HDDC3-205ENST00000559898 FAM193BQ96PV7 902 aaPredicted RBP19.63■□□□□ 0.73
HDDC3-205ENST00000559898 PAAF1Q9BRP4 392 aa19.63■□□□□ 0.73
HDDC3-205ENST00000559898 PHF7Q9BWX1 381 aaPredicted RBP19.63■□□□□ 0.73
HDDC3-205ENST00000559898 POMKQ9H5K3 350 aa19.63■□□□□ 0.73
HDDC3-205ENST00000559898 C2CD2LO14523 706 aa19.62■□□□□ 0.73
HDDC3-205ENST00000559898 ALDH2P05091 517 aa19.62■□□□□ 0.73
HDDC3-205ENST00000559898 CNPP09543 421 aaKnown RBP19.62■□□□□ 0.73
HDDC3-205ENST00000559898 ALADP13716 330 aa19.62■□□□□ 0.73
HDDC3-205ENST00000559898 CBX2Q14781 532 aaPredicted RBP19.62■□□□□ 0.73
HDDC3-205ENST00000559898 HERC4Q5GLZ8 1057 aaPredicted RBP19.62■□□□□ 0.73
HDDC3-205ENST00000559898 PPP4R3CPQ6ZMV5 832 aa19.62■□□□□ 0.73
HDDC3-205ENST00000559898 DAW1Q8N136 415 aa19.62■□□□□ 0.73
HDDC3-205ENST00000559898 CCDC51Q96ER9 411 aa19.62■□□□□ 0.73
HDDC3-205ENST00000559898 KLHL5Q96PQ7 755 aa19.62■□□□□ 0.73
HDDC3-205ENST00000559898 TMEM175Q9BSA9 504 aa19.62■□□□□ 0.73
HDDC3-205ENST00000559898 PARP2Q9UGN5 583 aa19.62■□□□□ 0.73
HDDC3-205ENST00000559898 IRAK3Q9Y616 596 aa19.62■□□□□ 0.73
HDDC3-205ENST00000559898 DENND4AQ7Z401 1863 aa19.61■□□□□ 0.73
HDDC3-205ENST00000559898 ST18O60284 1047 aa19.61■□□□□ 0.73
HDDC3-205ENST00000559898 PRKCBP05771 671 aa19.61■□□□□ 0.73
HDDC3-205ENST00000559898 NT5DC1Q5TFE4 455 aa19.61■□□□□ 0.73
HDDC3-205ENST00000559898 RNF168Q8IYW5 571 aaPredicted RBP19.61■□□□□ 0.73
HDDC3-205ENST00000559898 CNNM3Q8NE01 707 aa19.61■□□□□ 0.73
HDDC3-205ENST00000559898 CASP10Q92851 521 aa19.61■□□□□ 0.73
HDDC3-205ENST00000559898 PNMA5Q96PV4 448 aa19.61■□□□□ 0.73
HDDC3-205ENST00000559898 PLIN2Q99541 437 aa19.61■□□□□ 0.73
HDDC3-205ENST00000559898 POP1Q99575 1024 aaKnown RBP19.61■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 56.4 ms