RNA–Protein interactions for RNA: ENST00000547825.5

LIMA1-203, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-203ENST00000547825 STAG1Q8WVM7 1258 aa5.94□□□□□ -1.46
LIMA1-203ENST00000547825 LMBR1Q8WVP7 490 aa5.94□□□□□ -1.46
LIMA1-203ENST00000547825 TBC1D5Q92609 795 aa5.94□□□□□ -1.46
LIMA1-203ENST00000547825 IFT74Q96LB3 600 aa5.94□□□□□ -1.46
LIMA1-203ENST00000547825 SPATS2LQ9NUQ6 558 aaKnown RBP5.94□□□□□ -1.46
LIMA1-203ENST00000547825 INTS9Q9NV88 658 aaKnown RBP5.94□□□□□ -1.46
LIMA1-203ENST00000547825 BSDC1Q9NW68 430 aaPredicted RBP5.94□□□□□ -1.46
LIMA1-203ENST00000547825 MYO1AQ9UBC5 1043 aa5.94□□□□□ -1.46
LIMA1-203ENST00000547825 ARPP21Q9UBL0 812 aaPredicted RBP5.94□□□□□ -1.46
LIMA1-203ENST00000547825 SWAP70Q9UH65 585 aa5.94□□□□□ -1.46
LIMA1-203ENST00000547825 TBK1Q9UHD2 729 aa5.94□□□□□ -1.46
LIMA1-203ENST00000547825 PLAAQ9Y263 795 aa5.94□□□□□ -1.46
LIMA1-203ENST00000547825 CENPFP49454 3210 aa5.94□□□□□ -1.46
LIMA1-203ENST00000547825 HTTP42858 3142 aa5.93□□□□□ -1.46
LIMA1-203ENST00000547825 WTIPA6NIX2 430 aaPredicted RBP5.93□□□□□ -1.46
LIMA1-203ENST00000547825 PP2D1A8MPX8 630 aa5.93□□□□□ -1.46
LIMA1-203ENST00000547825 XRCC5P13010 732 aaKnown RBP5.93□□□□□ -1.46
LIMA1-203ENST00000547825 SEPT6Q14141 434 aa5.93□□□□□ -1.46
LIMA1-203ENST00000547825 HIF1AQ16665 826 aa5.93□□□□□ -1.46
LIMA1-203ENST00000547825 TCP11X2Q5H9J9 407 aa5.93□□□□□ -1.46
LIMA1-203ENST00000547825 KIAA0319Q5VV43 1072 aa5.93□□□□□ -1.46
LIMA1-203ENST00000547825 RSRC2Q7L4I2 434 aaKnown RBP5.93□□□□□ -1.46
LIMA1-203ENST00000547825 LMNTD2Q8IXW0 634 aa5.93□□□□□ -1.46
LIMA1-203ENST00000547825 TRIM55Q9BYV6 548 aa5.93□□□□□ -1.46
LIMA1-203ENST00000547825 HOMER2Q9NSB8 354 aa5.93□□□□□ -1.46
LIMA1-203ENST00000547825 KLC4Q9NSK0 619 aa5.93□□□□□ -1.46
LIMA1-203ENST00000547825 USH1CQ9Y6N9 552 aa5.93□□□□□ -1.46
LIMA1-203ENST00000547825 ZNF804BA4D1E1 1349 aa5.93□□□□□ -1.46
LIMA1-203ENST00000547825 DCDC2BA2VCK2 349 aa5.93□□□□□ -1.46
LIMA1-203ENST00000547825 MMP1P03956 469 aa5.93□□□□□ -1.46
LIMA1-203ENST00000547825 TMOD1P28289 359 aa5.93□□□□□ -1.46
LIMA1-203ENST00000547825 SLC8A1P32418 973 aa5.93□□□□□ -1.46
LIMA1-203ENST00000547825 SOX9P48436 509 aa5.93□□□□□ -1.46
LIMA1-203ENST00000547825 NTRK3Q16288 839 aa5.93□□□□□ -1.46
LIMA1-203ENST00000547825 CNNM4Q6P4Q7 775 aa5.93□□□□□ -1.46
LIMA1-203ENST00000547825 RTKN2Q8IZC4 609 aa5.93□□□□□ -1.46
LIMA1-203ENST00000547825 LILRB2Q8N423 598 aa5.93□□□□□ -1.46
LIMA1-203ENST00000547825 CCDC197Q8NCU1 140 aa5.93□□□□□ -1.46
LIMA1-203ENST00000547825 HPS3Q969F9 1004 aa5.93□□□□□ -1.46
LIMA1-203ENST00000547825 RNF166Q96A37 237 aaPredicted RBP5.93□□□□□ -1.46
LIMA1-203ENST00000547825 NSUN5Q96P11 429 aaKnown RBP5.93□□□□□ -1.46
LIMA1-203ENST00000547825 CCDC77Q9BR77 488 aa5.93□□□□□ -1.46
LIMA1-203ENST00000547825 ANKZF1Q9H8Y5 726 aa5.93□□□□□ -1.46
LIMA1-203ENST00000547825 CTTNBP2NLQ9P2B4 639 aa5.93□□□□□ -1.46
LIMA1-203ENST00000547825 TNRC18O15417 2968 aaPredicted RBP5.93□□□□□ -1.46
LIMA1-203ENST00000547825 TXNDC9O14530 226 aa5.93□□□□□ -1.46
LIMA1-203ENST00000547825 PDHA1P08559 390 aa5.93□□□□□ -1.46
LIMA1-203ENST00000547825 TFE3P19532 575 aaPredicted RBP5.93□□□□□ -1.46
LIMA1-203ENST00000547825 STX2P32856 288 aa5.93□□□□□ -1.46
LIMA1-203ENST00000547825 PRCPP42785 496 aa5.93□□□□□ -1.46
LIMA1-203ENST00000547825 KIF11P52732 1056 aa5.93□□□□□ -1.46
LIMA1-203ENST00000547825 FKBP1AP62942 108 aaKnown RBP5.93□□□□□ -1.46
LIMA1-203ENST00000547825 CAMK2GQ13555 558 aaPredicted RBP5.93□□□□□ -1.46
LIMA1-203ENST00000547825 TTC39BQ5VTQ0 682 aaPredicted RBP5.93□□□□□ -1.46
LIMA1-203ENST00000547825 LYSMD3Q7Z3D4 306 aa5.93□□□□□ -1.46
LIMA1-203ENST00000547825 SPATA5Q8NB90 893 aa5.93□□□□□ -1.46
LIMA1-203ENST00000547825 PPP1R14CQ8TAE6 165 aa5.93□□□□□ -1.46
LIMA1-203ENST00000547825 ARL8AQ96BM9 186 aa5.93□□□□□ -1.46
LIMA1-203ENST00000547825 RBM17Q96I25 401 aaKnown RBP5.93□□□□□ -1.46
LIMA1-203ENST00000547825 DEPDC7Q96QD5 511 aa5.93□□□□□ -1.46
LIMA1-203ENST00000547825 LIN7BQ9HAP6 207 aa5.93□□□□□ -1.46
LIMA1-203ENST00000547825 C6orf50Q9HD87 102 aa5.93□□□□□ -1.46
LIMA1-203ENST00000547825 AGPAT5Q9NUQ2 364 aa5.93□□□□□ -1.46
LIMA1-203ENST00000547825 HAUS2Q9NVX0 235 aa5.93□□□□□ -1.46
LIMA1-203ENST00000547825 TUBE1Q9UJT0 475 aa5.93□□□□□ -1.46
LIMA1-203ENST00000547825 COL2A1P02458 1487 aaPredicted RBP5.93□□□□□ -1.46
LIMA1-203ENST00000547825 TNFAIP3P21580 790 aa5.93□□□□□ -1.46
LIMA1-203ENST00000547825 SCP2P22307 547 aa5.93□□□□□ -1.46
LIMA1-203ENST00000547825 CETN2P41208 172 aa5.93□□□□□ -1.46
LIMA1-203ENST00000547825 MAGOHP61326 146 aaKnown RBP5.93□□□□□ -1.46
LIMA1-203ENST00000547825 GPSM2P81274 684 aa5.93□□□□□ -1.46
LIMA1-203ENST00000547825 TFAP4Q01664 338 aa5.93□□□□□ -1.46
LIMA1-203ENST00000547825 FAAP100Q0VG06 881 aa5.93□□□□□ -1.46
LIMA1-203ENST00000547825 MUM1Q2TAK8 710 aa5.93□□□□□ -1.46
LIMA1-203ENST00000547825 CYP4X1Q8N118 509 aa5.93□□□□□ -1.46
LIMA1-203ENST00000547825 CRACR2BQ8N4Y2 399 aaPredicted RBP5.93□□□□□ -1.46
LIMA1-203ENST00000547825 RNF10Q8N5U6 811 aaKnown RBP5.93□□□□□ -1.46
LIMA1-203ENST00000547825 PPFIBP2Q8ND30 876 aa5.93□□□□□ -1.46
LIMA1-203ENST00000547825 SPATA4Q8NEY3 305 aa5.93□□□□□ -1.46
LIMA1-203ENST00000547825 GDAP1Q8TB36 358 aa5.93□□□□□ -1.46
LIMA1-203ENST00000547825 STMN2Q93045 179 aa5.93□□□□□ -1.46
LIMA1-203ENST00000547825 MAGOHBQ96A72 148 aaKnown RBP5.93□□□□□ -1.46
LIMA1-203ENST00000547825 RRP36Q96EU6 259 aaKnown RBP5.93□□□□□ -1.46
LIMA1-203ENST00000547825 SHDQ96IW2 340 aa5.93□□□□□ -1.46
LIMA1-203ENST00000547825 TRIM7Q9C029 511 aa5.93□□□□□ -1.46
LIMA1-203ENST00000547825 CPVLQ9H3G5 476 aa5.93□□□□□ -1.46
LIMA1-203ENST00000547825 FAM114A2Q9NRY5 505 aa5.93□□□□□ -1.46
LIMA1-203ENST00000547825 INTUQ9ULD6 942 aa5.93□□□□□ -1.46
LIMA1-203ENST00000547825 PCDHB5Q9Y5E4 795 aa5.93□□□□□ -1.46
LIMA1-203ENST00000547825 PCDHA13Q9Y5I0 950 aa5.93□□□□□ -1.46
LIMA1-203ENST00000547825 SRPRBQ9Y5M8 271 aaKnown RBP5.93□□□□□ -1.46
LIMA1-203ENST00000547825 PHF20L1A8MW92 1017 aa5.92□□□□□ -1.46
LIMA1-203ENST00000547825 CETN3O15182 167 aa5.92□□□□□ -1.46
LIMA1-203ENST00000547825 MEFVO15553 781 aaPredicted RBP5.92□□□□□ -1.46
LIMA1-203ENST00000547825 GREM1O60565 184 aa5.92□□□□□ -1.46
LIMA1-203ENST00000547825 IL1R1P14778 569 aa5.92□□□□□ -1.46
LIMA1-203ENST00000547825 KRT15P19012 456 aa5.92□□□□□ -1.46
LIMA1-203ENST00000547825 ZNF280AP59817 542 aaPredicted RBP5.92□□□□□ -1.46
LIMA1-203ENST00000547825 GFPT1Q06210 699 aaPredicted RBP5.92□□□□□ -1.46
LIMA1-203ENST00000547825 CETN1Q12798 172 aa5.92□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms