RNA–Protein interactions for RNA: ENST00000450966.5

USP40-208, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USP40, Length 5,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-208ENST00000450966 CCDC166P0CW27 439 aa14.09□□□□□ -0.15
USP40-208ENST00000450966 DYMQ7RTS9 669 aa14.09□□□□□ -0.15
USP40-208ENST00000450966 PAIP1Q9H074 479 aaKnown RBP14.09□□□□□ -0.15
USP40-208ENST00000450966 RANBP17Q9H2T7 1088 aaKnown RBP14.09□□□□□ -0.15
USP40-208ENST00000450966 SMG5Q9UPR3 1016 aaKnown RBP14.09□□□□□ -0.15
USP40-208ENST00000450966 GSTA4O15217 222 aa14.09□□□□□ -0.15
USP40-208ENST00000450966 MB21D1Q8N884 522 aa14.09□□□□□ -0.15
USP40-208ENST00000450966 TTC17Q96AE7 1141 aa14.09□□□□□ -0.15
USP40-208ENST00000450966 ZNF341Q9BYN7 854 aa14.09□□□□□ -0.15
USP40-208ENST00000450966 METTL14Q9HCE5 456 aaKnown RBP14.09□□□□□ -0.15
USP40-208ENST00000450966 DTNAQ9Y4J8 743 aa14.09□□□□□ -0.15
USP40-208ENST00000450966 MED23Q9ULK4 1368 aa14.09□□□□□ -0.15
USP40-208ENST00000450966 COPEO14579 308 aa14.09□□□□□ -0.15
USP40-208ENST00000450966 TTLL1O95922 423 aa14.09□□□□□ -0.15
USP40-208ENST00000450966 BCAMP50895 628 aa14.09□□□□□ -0.15
USP40-208ENST00000450966 KYNUQ16719 465 aa14.09□□□□□ -0.15
USP40-208ENST00000450966 ZNF658Q5TYW1 1059 aaPredicted RBP14.09□□□□□ -0.15
USP40-208ENST00000450966 FOXR1Q6PIV2 292 aa14.09□□□□□ -0.15
USP40-208ENST00000450966 HEATR4Q86WZ0 1026 aa14.09□□□□□ -0.15
USP40-208ENST00000450966 MMGT1Q8N4V1 131 aa14.09□□□□□ -0.15
USP40-208ENST00000450966 GADD45GIP1Q8TAE8 222 aaPredicted RBP14.09□□□□□ -0.15
USP40-208ENST00000450966 EME1Q96AY2 570 aa14.09□□□□□ -0.15
USP40-208ENST00000450966 FAM227BQ96M60 508 aa14.09□□□□□ -0.15
USP40-208ENST00000450966 PSTPIP2Q9H939 334 aa14.09□□□□□ -0.15
USP40-208ENST00000450966 PLGRKTQ9HBL7 147 aa14.09□□□□□ -0.15
USP40-208ENST00000450966 FBXO9Q9UK97 447 aaPredicted RBP14.09□□□□□ -0.15
USP40-208ENST00000450966 SNX24Q9Y343 169 aa14.09□□□□□ -0.15
USP40-208ENST00000450966 FAM25AB3EWG3 89 aa14.08□□□□□ -0.16
USP40-208ENST00000450966 FAM25CB3EWG5 89 aa14.08□□□□□ -0.16
USP40-208ENST00000450966 FAM25GB3EWG6 89 aa14.08□□□□□ -0.16
USP40-208ENST00000450966 PDAP1Q13442 181 aaKnown RBP14.08□□□□□ -0.16
USP40-208ENST00000450966 KRT72Q14CN4 511 aa14.08□□□□□ -0.16
USP40-208ENST00000450966 LRRC39Q96DD0 335 aa14.08□□□□□ -0.16
USP40-208ENST00000450966 CMTM5Q96DZ9 223 aa14.08□□□□□ -0.16
USP40-208ENST00000450966 NSL1Q96IY1 281 aa14.08□□□□□ -0.16
USP40-208ENST00000450966 ESYT2A0FGR8 921 aa14.08□□□□□ -0.16
USP40-208ENST00000450966 GOLGA8RI6L899 631 aa14.08□□□□□ -0.16
USP40-208ENST00000450966 MYBL1P10243 752 aa14.08□□□□□ -0.16
USP40-208ENST00000450966 TNNI1P19237 187 aa14.08□□□□□ -0.16
USP40-208ENST00000450966 GSCP56915 257 aaPredicted RBP14.08□□□□□ -0.16
USP40-208ENST00000450966 MAP3K10Q02779 954 aa14.08□□□□□ -0.16
USP40-208ENST00000450966 THOC5Q13769 683 aaKnown RBP14.08□□□□□ -0.16
USP40-208ENST00000450966 SYCP2LQ5T4T6 812 aa14.08□□□□□ -0.16
USP40-208ENST00000450966 PBXIP1Q96AQ6 731 aa14.08□□□□□ -0.16
USP40-208ENST00000450966 HDAC6Q9UBN7 1215 aa14.08□□□□□ -0.16
USP40-208ENST00000450966 SNX12Q9UMY4 172 aa14.08□□□□□ -0.16
USP40-208ENST00000450966 ADGRA3Q8IWK6 1321 aa14.08□□□□□ -0.16
USP40-208ENST00000450966 SMIM31A0A1B0GVY4 71 aa14.08□□□□□ -0.16
USP40-208ENST00000450966 FGGP02679 453 aa14.08□□□□□ -0.16
USP40-208ENST00000450966 ELF3P78545 371 aaPredicted RBP14.08□□□□□ -0.16
USP40-208ENST00000450966 BRIP1Q9BX63 1249 aa14.08□□□□□ -0.16
USP40-208ENST00000450966 SYNGAP1Q96PV0 1343 aa14.08□□□□□ -0.16
USP40-208ENST00000450966 A0A087WWV3 80 aa14.08□□□□□ -0.16
USP40-208ENST00000450966 KRT37O76014 449 aa14.08□□□□□ -0.16
USP40-208ENST00000450966 FDX1P10109 184 aa14.08□□□□□ -0.16
USP40-208ENST00000450966 POLR2EP19388 210 aaKnown RBP14.08□□□□□ -0.16
USP40-208ENST00000450966 ARHGDIAP52565 204 aa14.08□□□□□ -0.16
USP40-208ENST00000450966 TPH2Q8IWU9 490 aa14.08□□□□□ -0.16
USP40-208ENST00000450966 OSBPL3Q9H4L5 887 aa14.08□□□□□ -0.16
USP40-208ENST00000450966 SUGT1Q9Y2Z0 365 aa14.08□□□□□ -0.16
USP40-208ENST00000450966 PCDHB13Q9Y5F0 798 aa14.08□□□□□ -0.16
USP40-208ENST00000450966 DLC1Q96QB1 1528 aa14.07□□□□□ -0.16
USP40-208ENST00000450966 SMCO2A6NFE2 343 aa14.07□□□□□ -0.16
USP40-208ENST00000450966 MYL1P05976 194 aa14.07□□□□□ -0.16
USP40-208ENST00000450966 IL10P22301 178 aa14.07□□□□□ -0.16
USP40-208ENST00000450966 RBM41Q96IZ5 413 aaKnown RBP14.07□□□□□ -0.16
USP40-208ENST00000450966 CLIC6Q96NY7 704 aa14.07□□□□□ -0.16
USP40-208ENST00000450966 USP44Q9H0E7 712 aa14.07□□□□□ -0.16
USP40-208ENST00000450966 MLXIPLQ9NP71 852 aa14.07□□□□□ -0.16
USP40-208ENST00000450966 MTO1Q9Y2Z2 717 aaKnown RBP14.07□□□□□ -0.16
USP40-208ENST00000450966 OATP04181 439 aa14.07□□□□□ -0.16
USP40-208ENST00000450966 FESP07332 822 aa14.07□□□□□ -0.16
USP40-208ENST00000450966 RASGRP2Q7LDG7 609 aa14.07□□□□□ -0.16
USP40-208ENST00000450966 TCAIMQ8N3R3 496 aa14.07□□□□□ -0.16
USP40-208ENST00000450966 MBD2Q9UBB5 411 aa14.07□□□□□ -0.16
USP40-208ENST00000450966 FRMPD1Q5SYB0 1578 aa14.07□□□□□ -0.16
USP40-208ENST00000450966 ORC4O43929 436 aa14.07□□□□□ -0.16
USP40-208ENST00000450966 GSNP06396 782 aa14.07□□□□□ -0.16
USP40-208ENST00000450966 KLHL38Q2WGJ6 581 aa14.07□□□□□ -0.16
USP40-208ENST00000450966 TMEM110Q86TL2 294 aa14.07□□□□□ -0.16
USP40-208ENST00000450966 ZNF654Q8IZM8 581 aa14.07□□□□□ -0.16
USP40-208ENST00000450966 ZNF180Q9UJW8 692 aa14.07□□□□□ -0.16
USP40-208ENST00000450966 SRRM3A6NNA2 597 aaPredicted RBP14.07□□□□□ -0.16
USP40-208ENST00000450966 KCNQ3O43525 872 aa14.07□□□□□ -0.16
USP40-208ENST00000450966 PALMO75781 387 aa14.07□□□□□ -0.16
USP40-208ENST00000450966 TBCCQ15814 346 aa14.07□□□□□ -0.16
USP40-208ENST00000450966 LPCAT2Q7L5N7 544 aa14.07□□□□□ -0.16
USP40-208ENST00000450966 FOXP2O15409 715 aa14.06□□□□□ -0.16
USP40-208ENST00000450966 ASNSP08243 561 aa14.06□□□□□ -0.16
USP40-208ENST00000450966 DCCP43146 1447 aa14.06□□□□□ -0.16
USP40-208ENST00000450966 MECOMQ03112 1051 aa14.06□□□□□ -0.16
USP40-208ENST00000450966 ACAD11Q709F0 780 aa14.06□□□□□ -0.16
USP40-208ENST00000450966 NELFCDQ8IXH7 590 aa14.06□□□□□ -0.16
USP40-208ENST00000450966 BTBD6Q96KE9 485 aa14.06□□□□□ -0.16
USP40-208ENST00000450966 MYL10Q9BUA6 226 aa14.06□□□□□ -0.16
USP40-208ENST00000450966 CCDC28BQ9BUN5 200 aa14.06□□□□□ -0.16
USP40-208ENST00000450966 SUGCTQ9HAC7 445 aa14.06□□□□□ -0.16
USP40-208ENST00000450966 CACYBPQ9HB71 228 aaKnown RBP14.06□□□□□ -0.16
USP40-208ENST00000450966 DDX18Q9NVP1 670 aaKnown RBP14.06□□□□□ -0.16
USP40-208ENST00000450966 TBC1D7Q9P0N9 293 aa14.06□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms