RNA–Protein interactions for RNA: ENST00000400301.5

USP48-204, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 4,309 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-204ENST00000400301 STXBP2Q15833 593 aa19.84■□□□□ 0.77
USP48-204ENST00000400301 CRY2Q49AN0 593 aa19.84■□□□□ 0.77
USP48-204ENST00000400301 THNSL1Q8IYQ7 743 aa19.84■□□□□ 0.77
USP48-204ENST00000400301 ANKRD36BP1Q96IX9 119 aa19.84■□□□□ 0.77
USP48-204ENST00000400301 CBWD1Q9BRT8 395 aa19.84■□□□□ 0.77
USP48-204ENST00000400301 IDI2Q9BXS1 227 aa19.84■□□□□ 0.77
USP48-204ENST00000400301 CARD9Q9H257 536 aa19.84■□□□□ 0.77
USP48-204ENST00000400301 EXOC1LA0A1B0GW35 172 aa19.83■□□□□ 0.77
USP48-204ENST00000400301 MEIS2O14770 477 aa19.83■□□□□ 0.77
USP48-204ENST00000400301 HNRNPH3P31942 346 aaKnown RBP19.83■□□□□ 0.77
USP48-204ENST00000400301 MKRN4PQ13434 485 aaPredicted RBP19.83■□□□□ 0.77
USP48-204ENST00000400301 SUPT20HL1Q3ZLR7 823 aa19.83■□□□□ 0.77
USP48-204ENST00000400301 FAM133BQ5BKY9 247 aaKnown RBP19.83■□□□□ 0.77
USP48-204ENST00000400301 LRIG3Q6UXM1 1119 aa19.83■□□□□ 0.77
USP48-204ENST00000400301 JAMLQ86YT9 394 aa19.83■□□□□ 0.77
USP48-204ENST00000400301 EPN3Q9H201 632 aa19.83■□□□□ 0.77
USP48-204ENST00000400301 GPRC5CQ9NQ84 441 aa19.83■□□□□ 0.77
USP48-204ENST00000400301 ATF5Q9Y2D1 282 aaPredicted RBP19.83■□□□□ 0.77
USP48-204ENST00000400301 F8VZ95 297 aa19.83■□□□□ 0.77
USP48-204ENST00000400301 ZBTB39O15060 712 aa19.83■□□□□ 0.77
USP48-204ENST00000400301 FGFR4P22455 802 aa19.83■□□□□ 0.77
USP48-204ENST00000400301 HSD17B3P37058 310 aa19.83■□□□□ 0.77
USP48-204ENST00000400301 YARSP54577 528 aaKnown RBP19.83■□□□□ 0.77
USP48-204ENST00000400301 NUGGCQ68CJ6 796 aa19.83■□□□□ 0.77
USP48-204ENST00000400301 ZNF662Q6ZS27 426 aa19.83■□□□□ 0.77
USP48-204ENST00000400301 ARHGEF18Q6ZSZ5 1173 aa19.83■□□□□ 0.77
USP48-204ENST00000400301 TSNARE1Q96NA8 513 aa19.83■□□□□ 0.77
USP48-204ENST00000400301 SMC6Q96SB8 1091 aa19.83■□□□□ 0.77
USP48-204ENST00000400301 SSTR3P32745 418 aaPredicted RBP19.83■□□□□ 0.76
USP48-204ENST00000400301 RPS6P62753 249 aaKnown RBP19.83■□□□□ 0.76
USP48-204ENST00000400301 ENOSF1Q7L5Y1 443 aa19.83■□□□□ 0.76
USP48-204ENST00000400301 SLC51AQ86UW1 340 aa19.83■□□□□ 0.76
USP48-204ENST00000400301 KIFC3Q9BVG8 833 aa19.83■□□□□ 0.76
USP48-204ENST00000400301 TIPINQ9BVW5 301 aa19.83■□□□□ 0.76
USP48-204ENST00000400301 ACTR5Q9H9F9 607 aaPredicted RBP19.83■□□□□ 0.76
USP48-204ENST00000400301 FRMD4AQ9P2Q2 1039 aaPredicted RBP19.83■□□□□ 0.76
USP48-204ENST00000400301 COL1A1P02452 1464 aaPredicted RBP19.83■□□□□ 0.76
USP48-204ENST00000400301 SLITRK3O94933 977 aa19.83■□□□□ 0.76
USP48-204ENST00000400301 GGPS1O95749 300 aa19.83■□□□□ 0.76
USP48-204ENST00000400301 NR3C2P08235 984 aa19.83■□□□□ 0.76
USP48-204ENST00000400301 SNX16P57768 344 aa19.83■□□□□ 0.76
USP48-204ENST00000400301 NAA25Q14CX7 972 aa19.83■□□□□ 0.76
USP48-204ENST00000400301 DACT2Q5SW24 774 aa19.83■□□□□ 0.76
USP48-204ENST00000400301 ERP44Q9BS26 406 aa19.83■□□□□ 0.76
USP48-204ENST00000400301 AGO2Q9UKV8 859 aaKnown RBP19.83■□□□□ 0.76
USP48-204ENST00000400301 HMGCS2P54868 508 aa19.82■□□□□ 0.76
USP48-204ENST00000400301 TFDP1Q14186 410 aa19.82■□□□□ 0.76
USP48-204ENST00000400301 KCTD2Q14681 263 aa19.82■□□□□ 0.76
USP48-204ENST00000400301 LRRC8CQ8TDW0 803 aa19.82■□□□□ 0.76
USP48-204ENST00000400301 TAAR1Q96RJ0 339 aa19.82■□□□□ 0.76
USP48-204ENST00000400301 ZNF408Q9H9D4 720 aa19.82■□□□□ 0.76
USP48-204ENST00000400301 MLXIPLQ9NP71 852 aa19.82■□□□□ 0.76
USP48-204ENST00000400301 FAM198AQ9UFP1 575 aa19.82■□□□□ 0.76
USP48-204ENST00000400301 DISP2A7MBM2 1401 aa19.82■□□□□ 0.76
USP48-204ENST00000400301 PHF2O75151 1096 aa19.82■□□□□ 0.76
USP48-204ENST00000400301 COBLL1Q53SF7 1204 aa19.82■□□□□ 0.76
USP48-204ENST00000400301 ERICH1Q86X53 443 aa19.82■□□□□ 0.76
USP48-204ENST00000400301 RFX6Q8HWS3 928 aa19.82■□□□□ 0.76
USP48-204ENST00000400301 SULF1Q8IWU6 871 aa19.82■□□□□ 0.76
USP48-204ENST00000400301 MKL1Q969V6 931 aa19.82■□□□□ 0.76
USP48-204ENST00000400301 NLRP4Q96MN2 994 aa19.82■□□□□ 0.76
USP48-204ENST00000400301 CFAP57Q96MR6 1250 aa19.82■□□□□ 0.76
USP48-204ENST00000400301 PPP1R11O60927 126 aaPredicted RBP19.82■□□□□ 0.76
USP48-204ENST00000400301 MYBL2P10244 700 aa19.82■□□□□ 0.76
USP48-204ENST00000400301 GNA15P30679 374 aa19.82■□□□□ 0.76
USP48-204ENST00000400301 KCNJ1P48048 391 aa19.82■□□□□ 0.76
USP48-204ENST00000400301 SLC8A3P57103 927 aa19.82■□□□□ 0.76
USP48-204ENST00000400301 GABPAQ06546 454 aa19.82■□□□□ 0.76
USP48-204ENST00000400301 HIBCHQ6NVY1 386 aaPredicted RBP19.82■□□□□ 0.76
USP48-204ENST00000400301 CASC4Q6P4E1 433 aa19.82■□□□□ 0.76
USP48-204ENST00000400301 OTOP1Q7RTM1 612 aa19.82■□□□□ 0.76
USP48-204ENST00000400301 AENQ8WTP8 325 aaKnown RBP19.82■□□□□ 0.76
USP48-204ENST00000400301 JPH1Q9HDC5 661 aaPredicted RBP19.82■□□□□ 0.76
USP48-204ENST00000400301 RBAKQ9NYW8 714 aaPredicted RBP19.82■□□□□ 0.76
USP48-204ENST00000400301 EPB41L3Q9Y2J2 1087 aaPredicted RBP19.82■□□□□ 0.76
USP48-204ENST00000400301 H7C0C1 242 aa19.81■□□□□ 0.76
USP48-204ENST00000400301 ATP5OP48047 213 aa19.81■□□□□ 0.76
USP48-204ENST00000400301 EN1Q05925 392 aaPredicted RBP19.81■□□□□ 0.76
USP48-204ENST00000400301 SNCBQ16143 134 aa19.81■□□□□ 0.76
USP48-204ENST00000400301 CCDC38Q502W7 563 aa19.81■□□□□ 0.76
USP48-204ENST00000400301 LGSNQ5TDP6 509 aa19.81■□□□□ 0.76
USP48-204ENST00000400301 CALN1Q9BXU9 219 aa19.81■□□□□ 0.76
USP48-204ENST00000400301 UVRAGQ9P2Y5 699 aa19.81■□□□□ 0.76
USP48-204ENST00000400301 SLC9A2Q9UBY0 812 aa19.81■□□□□ 0.76
USP48-204ENST00000400301 GTPBP10A4D1E9 387 aaKnown RBP19.81■□□□□ 0.76
USP48-204ENST00000400301 SPDYE2BA6NHP3 402 aa19.81■□□□□ 0.76
USP48-204ENST00000400301 TLR3O15455 904 aaKnown RBP19.81■□□□□ 0.76
USP48-204ENST00000400301 SPDYE6P0CI01 402 aa19.81■□□□□ 0.76
USP48-204ENST00000400301 TROVE2P10155 538 aaKnown RBP eCLIP19.81■□□□□ 0.76
USP48-204ENST00000400301 CAP2P40123 477 aa19.81■□□□□ 0.76
USP48-204ENST00000400301 ACOT2P49753 483 aa19.81■□□□□ 0.76
USP48-204ENST00000400301 ACTRT1Q8TDG2 376 aa19.81■□□□□ 0.76
USP48-204ENST00000400301 ZNF473Q8WTR7 871 aaKnown RBP19.81■□□□□ 0.76
USP48-204ENST00000400301 ADPGKQ9BRR6 497 aa19.81■□□□□ 0.76
USP48-204ENST00000400301 ZNF302Q9NR11 478 aa19.81■□□□□ 0.76
USP48-204ENST00000400301 DGAT1O75907 488 aa19.81■□□□□ 0.76
USP48-204ENST00000400301 FDX1P10109 184 aa19.81■□□□□ 0.76
USP48-204ENST00000400301 CNGA1P29973 690 aa19.81■□□□□ 0.76
USP48-204ENST00000400301 TMEM35BQ8NCS4 154 aa19.81■□□□□ 0.76
USP48-204ENST00000400301 ZNF263O14978 683 aa19.8■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 76.9 ms