RNA–Protein interactions for RNA: YER139C

RTR1, Transcript of CTD phosphatase, yeastyeast

Gene RTR1, Length 681 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
RTR1YER139C UTP23Q12339 254 aaKnown RBP1.18□□□□□ -2.22
RTR1YER139C TRM10Q12400 293 aa1.18□□□□□ -2.22
RTR1YER139C ERP3Q12403 225 aa1.18□□□□□ -2.22
RTR1YER139C YPR1Q12458 312 aa1.18□□□□□ -2.22
RTR1YER139C TDH3P00359 332 aaKnown RBP RIP-Chip data1.17□□□□□ -2.22not detected
RTR1YER139C CDC37P06101 506 aaKnown RBP1.17□□□□□ -2.22
RTR1YER139C GCD2P12754 651 aaPredicted RBP1.17□□□□□ -2.22
RTR1YER139C SAR1P20606 190 aaKnown RBP1.17□□□□□ -2.22
RTR1YER139C IFM1P25038 676 aa1.17□□□□□ -2.22
RTR1YER139C VPH2P32341 215 aa1.17□□□□□ -2.22
RTR1YER139C ARO4P32449 370 aaKnown RBP1.17□□□□□ -2.22
RTR1YER139C MRPL6P32904 214 aa1.17□□□□□ -2.22
RTR1YER139C TKL2P33315 681 aa1.17□□□□□ -2.22
RTR1YER139C YKL162CP36052 402 aa1.17□□□□□ -2.22
RTR1YER139C YHR035WP38769 630 aa1.17□□□□□ -2.22
RTR1YER139C YDR089WP38966 869 aa1.17□□□□□ -2.22
RTR1YER139C YFL040WP43562 540 aa1.17□□□□□ -2.22
RTR1YER139C ECO1P43605 281 aa1.17□□□□□ -2.22
RTR1YER139C EMC2P47133 292 aaKnown RBP1.17□□□□□ -2.22
RTR1YER139C VOA1P53262 265 aa1.17□□□□□ -2.22
RTR1YER139C YGR266WP53326 701 aa1.17□□□□□ -2.22
RTR1YER139C EGD1Q02642 157 aaKnown RBP1.17□□□□□ -2.22
RTR1YER139C ABZ2Q03266 374 aa1.17□□□□□ -2.22
RTR1YER139C GTO3Q04806 366 aa1.17□□□□□ -2.22
RTR1YER139C ARC18Q05933 178 aaKnown RBP1.17□□□□□ -2.22
RTR1YER139C DXO1Q06349 442 aa1.17□□□□□ -2.22
RTR1YER139C YLR413WQ06689 675 aa1.17□□□□□ -2.22
RTR1YER139C PAA1Q12447 191 aaKnown RBP1.17□□□□□ -2.22
RTR1YER139C LAG2Q92325 660 aa1.17□□□□□ -2.22
RTR1YER139C OM45P16547 393 aa1.16□□□□□ -2.22
RTR1YER139C DAL81P21657 970 aa1.16□□□□□ -2.22
RTR1YER139C ALK2P32789 676 aaPredicted RBP1.16□□□□□ -2.22
RTR1YER139C CDC13P32797 924 aaKnown RBP1.16□□□□□ -2.22
RTR1YER139C AIM29P36154 155 aa1.16□□□□□ -2.22
RTR1YER139C YBR062CP38239 180 aa1.16□□□□□ -2.22
RTR1YER139C SWC5P38326 303 aa1.16□□□□□ -2.22
RTR1YER139C TDA11P38854 504 aa1.16□□□□□ -2.22
RTR1YER139C VPS45P38932 577 aa1.16□□□□□ -2.22
RTR1YER139C SMC2P38989 1170 aaKnown RBP1.16□□□□□ -2.22
RTR1YER139C SSO2P39926 295 aa1.16□□□□□ -2.22
RTR1YER139C YIL012WP40551 113 aa1.16□□□□□ -2.22
RTR1YER139C INA22P40576 216 aa1.16□□□□□ -2.22
RTR1YER139C YFR045WP43617 309 aa1.16□□□□□ -2.22
RTR1YER139C YGL088WP53151 121 aa1.16□□□□□ -2.22
RTR1YER139C OKP1P53298 406 aa1.16□□□□□ -2.22
RTR1YER139C YNL040WP53960 456 aaPredicted RBP1.16□□□□□ -2.22
RTR1YER139C ACT1P60010 375 aaKnown RBP1.16□□□□□ -2.22
RTR1YER139C VPS20Q04272 221 aa1.16□□□□□ -2.22
RTR1YER139C SEC13Q04491 297 aaKnown RBP1.16□□□□□ -2.22
RTR1YER139C YDR222WQ04925 415 aa1.16□□□□□ -2.22
RTR1YER139C YLR446WQ06204 433 aa1.16□□□□□ -2.22
RTR1YER139C MRPL23Q12487 163 aaPredicted RBP1.16□□□□□ -2.22
RTR1YER139C DCP1Q12517 231 aaPredicted RBP1.16□□□□□ -2.22
RTR1YER139C RAD7P06779 565 aa1.15□□□□□ -2.23
RTR1YER139C CAR2P07991 424 aaKnown RBP1.15□□□□□ -2.23
RTR1YER139C MET2P08465 486 aa1.15□□□□□ -2.23
RTR1YER139C CDC42P19073 191 aa1.15□□□□□ -2.23
RTR1YER139C VPS1P21576 704 aaKnown RBP1.15□□□□□ -2.23
RTR1YER139C PET18P25362 215 aa1.15□□□□□ -2.23
RTR1YER139C RPL16BP26785 198 aaKnown RBP1.15□□□□□ -2.23
RTR1YER139C IMP1P28627 190 aa1.15□□□□□ -2.23
RTR1YER139C GCG1P32656 232 aaKnown RBP1.15□□□□□ -2.23
RTR1YER139C RIB7P33312 244 aa1.15□□□□□ -2.23
RTR1YER139C GPX1P36014 167 aa1.15□□□□□ -2.23
RTR1YER139C MCH2P36032 473 aa1.15□□□□□ -2.23
RTR1YER139C SWD2P36104 329 aaPredicted RBP1.15□□□□□ -2.23
RTR1YER139C MRPL37P36532 105 aa1.15□□□□□ -2.23
RTR1YER139C YPC1P38298 316 aa1.15□□□□□ -2.23
RTR1YER139C MED8P38304 223 aa1.15□□□□□ -2.23
RTR1YER139C RRF1P38771 230 aa1.15□□□□□ -2.23
RTR1YER139C MNN9P39107 395 aaKnown RBP1.15□□□□□ -2.23
RTR1YER139C LIF1P53150 421 aa1.15□□□□□ -2.23
RTR1YER139C SWC4P53201 476 aa1.15□□□□□ -2.23
RTR1YER139C MPP6P53725 186 aaPredicted RBP1.15□□□□□ -2.23
RTR1YER139C LAP3Q01532 483 aaKnown RBP RIP-Chip data1.15□□□□□ -2.23not detected
RTR1YER139C YDR114CQ04597 100 aa1.15□□□□□ -2.23
RTR1YER139C RRP42Q12277 265 aaPredicted RBP1.15□□□□□ -2.23
RTR1YER139C MRX4Q12467 430 aa1.15□□□□□ -2.23
RTR1YER139C IZH4Q99393 312 aa1.15□□□□□ -2.23
RTR1YER139C YAK1P14680 807 aa1.14□□□□□ -2.23
RTR1YER139C PRE7P23724 241 aaKnown RBP1.14□□□□□ -2.23
RTR1YER139C CSM1P25651 190 aa1.14□□□□□ -2.23
RTR1YER139C MIG1P27705 504 aa1.14□□□□□ -2.23
RTR1YER139C YUH1P35127 236 aa1.14□□□□□ -2.23
RTR1YER139C TPO5P36029 618 aa1.14□□□□□ -2.23
RTR1YER139C PEX18P38855 283 aa1.14□□□□□ -2.23
RTR1YER139C KRE29P40026 464 aa1.14□□□□□ -2.23
RTR1YER139C YFL064CP43540 174 aa1.14□□□□□ -2.23
RTR1YER139C LOH1P47055 219 aa1.14□□□□□ -2.23
RTR1YER139C HSH155P49955 971 aaKnown RBP1.14□□□□□ -2.23
RTR1YER139C PRP24P49960 444 aaKnown RBP1.14□□□□□ -2.23
RTR1YER139C KEL2P50090 882 aa1.14□□□□□ -2.23
RTR1YER139C RIB4P50861 169 aaPredicted RBP1.14□□□□□ -2.23
RTR1YER139C UBC13P52490 153 aa1.14□□□□□ -2.23
RTR1YER139C YPL113CQ02961 396 aa1.14□□□□□ -2.23
RTR1YER139C RLP24Q07915 199 aaKnown RBP1.14□□□□□ -2.23
RTR1YER139C SGT2Q12118 346 aaKnown RBP1.14□□□□□ -2.23
RTR1YER139C RPL24AP04449 155 aaKnown RBP1.13□□□□□ -2.23
RTR1YER139C RPL31AP0C2H8 113 aaKnown RBP1.13□□□□□ -2.23
RTR1YER139C MSS116P15424 664 aaKnown RBP1.13□□□□□ -2.23
Retrieved 100 of 5,963 RNA–protein pairs in 16.1 ms