RNA–Protein interactions for RNA: ENST00000597136.1

TRIM28-207, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 1,552 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-207ENST00000597136 INO80BQ9C086 356 aaPredicted RBP16.53■□□□□ 0.24
TRIM28-207ENST00000597136 MTIF3Q9H2K0 278 aaKnown RBP16.53■□□□□ 0.24
TRIM28-207ENST00000597136 HSFX4A0A1B0GTS1 333 aaPredicted RBP16.52■□□□□ 0.24
TRIM28-207ENST00000597136 HSFX3A0A1B0GWH4 333 aaPredicted RBP16.52■□□□□ 0.24
TRIM28-207ENST00000597136 KLRC4O43908 158 aa16.52■□□□□ 0.24
TRIM28-207ENST00000597136 RPN1P04843 607 aaKnown RBP16.52■□□□□ 0.24
TRIM28-207ENST00000597136 EDN1P05305 212 aa16.52■□□□□ 0.24
TRIM28-207ENST00000597136 KRT18P05783 430 aaKnown RBP16.52■□□□□ 0.24
TRIM28-207ENST00000597136 HOXA11P31270 313 aaPredicted RBP16.52■□□□□ 0.24
TRIM28-207ENST00000597136 NAMPTP43490 491 aa16.52■□□□□ 0.24
TRIM28-207ENST00000597136 NPTX2P47972 431 aa16.52■□□□□ 0.24
TRIM28-207ENST00000597136 AMHR2Q16671 573 aa16.52■□□□□ 0.24
TRIM28-207ENST00000597136 IFT74Q96LB3 600 aa16.52■□□□□ 0.24
TRIM28-207ENST00000597136 GSDMAQ96QA5 445 aa16.52■□□□□ 0.24
TRIM28-207ENST00000597136 FTHL17Q9BXU8 183 aa16.52■□□□□ 0.24
TRIM28-207ENST00000597136 TSPYL2Q9H2G4 693 aaPredicted RBP16.52■□□□□ 0.24
TRIM28-207ENST00000597136 RGS18Q9NS28 235 aa16.52■□□□□ 0.24
TRIM28-207ENST00000597136 COL4A6Q14031 1691 aa16.52■□□□□ 0.24
TRIM28-207ENST00000597136 PVALEFA0A1B0GWK0 134 aa16.51■□□□□ 0.23
TRIM28-207ENST00000597136 SYCE3A1L190 88 aa16.51■□□□□ 0.23
TRIM28-207ENST00000597136 CCDC169A6NNP5 214 aa16.51■□□□□ 0.23
TRIM28-207ENST00000597136 B4GALT5O43286 388 aa16.51■□□□□ 0.23
TRIM28-207ENST00000597136 ANK1P16157 1881 aa16.51■□□□□ 0.23
TRIM28-207ENST00000597136 CDCA2Q69YH5 1023 aaPredicted RBP16.51■□□□□ 0.23
TRIM28-207ENST00000597136 HERC6Q8IVU3 1022 aa16.51■□□□□ 0.23
TRIM28-207ENST00000597136 CRIPAKQ8N1N5 446 aa16.51■□□□□ 0.23
TRIM28-207ENST00000597136 TOP1MTQ969P6 601 aa16.51■□□□□ 0.23
TRIM28-207ENST00000597136 CPB2Q96IY4 423 aa16.51■□□□□ 0.23
TRIM28-207ENST00000597136 DRC1Q96MC2 740 aa16.51■□□□□ 0.23
TRIM28-207ENST00000597136 TIPINQ9BVW5 301 aa16.51■□□□□ 0.23
TRIM28-207ENST00000597136 PDCD11Q14690 1871 aaKnown RBP16.51■□□□□ 0.23
TRIM28-207ENST00000597136 RALGAPA2Q2PPJ7 1873 aa16.51■□□□□ 0.23
TRIM28-207ENST00000597136 DENND3A2RUS2 1198 aa16.51■□□□□ 0.23
TRIM28-207ENST00000597136 C9IYK1 514 aa16.51■□□□□ 0.23
TRIM28-207ENST00000597136 SLC16A4O15374 487 aa16.51■□□□□ 0.23
TRIM28-207ENST00000597136 EFCAB14O75071 495 aa16.51■□□□□ 0.23
TRIM28-207ENST00000597136 AMHP03971 560 aa16.51■□□□□ 0.23
TRIM28-207ENST00000597136 IDEP14735 1019 aa16.51■□□□□ 0.23
TRIM28-207ENST00000597136 SFPQP23246 707 aaKnown RBP eCLIP16.51■□□□□ 0.23
TRIM28-207ENST00000597136 ODR4Q5SWX8 454 aa16.51■□□□□ 0.23
TRIM28-207ENST00000597136 UNC13DQ70J99 1090 aa16.51■□□□□ 0.23
TRIM28-207ENST00000597136 CDR2LQ86X02 465 aaPredicted RBP16.51■□□□□ 0.23
TRIM28-207ENST00000597136 DEPTORQ8TB45 409 aa16.51■□□□□ 0.23
TRIM28-207ENST00000597136 PHOSPHO2Q8TCD6 241 aa16.51■□□□□ 0.23
TRIM28-207ENST00000597136 SLC9A7Q96T83 725 aa16.51■□□□□ 0.23
TRIM28-207ENST00000597136 NFKBIZQ9BYH8 718 aa16.51■□□□□ 0.23
TRIM28-207ENST00000597136 PBX4Q9BYU1 374 aa16.51■□□□□ 0.23
TRIM28-207ENST00000597136 FZD8Q9H461 694 aa16.51■□□□□ 0.23
TRIM28-207ENST00000597136 MAN1B1Q9UKM7 699 aa16.51■□□□□ 0.23
TRIM28-207ENST00000597136 ODF2LQ9ULJ1 636 aa16.51■□□□□ 0.23
TRIM28-207ENST00000597136 PIN4Q9Y237 131 aaKnown RBP16.51■□□□□ 0.23
TRIM28-207ENST00000597136 FRMD3A2A2Y4 597 aa16.5■□□□□ 0.23
TRIM28-207ENST00000597136 BIN1O00499 593 aa16.5■□□□□ 0.23
TRIM28-207ENST00000597136 TSPAN1O60635 241 aa16.5■□□□□ 0.23
TRIM28-207ENST00000597136 PLS3P13797 630 aa16.5■□□□□ 0.23
TRIM28-207ENST00000597136 ZSCAN20P17040 1043 aaPredicted RBP16.5■□□□□ 0.23
TRIM28-207ENST00000597136 ARF4P18085 180 aaPredicted RBP16.5■□□□□ 0.23
TRIM28-207ENST00000597136 KCNB1Q14721 858 aa16.5■□□□□ 0.23
TRIM28-207ENST00000597136 PPP2R5AQ15172 486 aa16.5■□□□□ 0.23
TRIM28-207ENST00000597136 KMT5BQ4FZB7 885 aa16.5■□□□□ 0.23
TRIM28-207ENST00000597136 TAS1R3Q7RTX0 852 aa16.5■□□□□ 0.23
TRIM28-207ENST00000597136 MYCT1Q8N699 235 aa16.5■□□□□ 0.23
TRIM28-207ENST00000597136 NTPCRQ9BSD7 190 aaKnown RBP16.5■□□□□ 0.23
TRIM28-207ENST00000597136 ANP32EQ9BTT0 268 aa16.5■□□□□ 0.23
TRIM28-207ENST00000597136 CCDC113Q9H0I3 377 aa16.5■□□□□ 0.23
TRIM28-207ENST00000597136 ZHX3Q9H4I2 956 aa16.5■□□□□ 0.23
TRIM28-207ENST00000597136 KMT5AQ9NQR1 393 aa16.5■□□□□ 0.23
TRIM28-207ENST00000597136 AGPAT5Q9NUQ2 364 aa16.5■□□□□ 0.23
TRIM28-207ENST00000597136 PANK4Q9NVE7 773 aa16.5■□□□□ 0.23
TRIM28-207ENST00000597136 YBX2Q9Y2T7 364 aaKnown RBP16.5■□□□□ 0.23
TRIM28-207ENST00000597136 ATG2AQ2TAZ0 1938 aa16.49■□□□□ 0.23
TRIM28-207ENST00000597136 TBCAO75347 108 aaKnown RBP16.49■□□□□ 0.23
TRIM28-207ENST00000597136 RHOBTB3O94955 611 aa16.49■□□□□ 0.23
TRIM28-207ENST00000597136 FAM13AO94988 1023 aa16.49■□□□□ 0.23
TRIM28-207ENST00000597136 GJB5O95377 273 aa16.49■□□□□ 0.23
TRIM28-207ENST00000597136 ZNF131P52739 623 aa16.49■□□□□ 0.23
TRIM28-207ENST00000597136 FAM189BP81408 668 aa16.49■□□□□ 0.23
TRIM28-207ENST00000597136 EHHADHQ08426 723 aa16.49■□□□□ 0.23
TRIM28-207ENST00000597136 UBXN11Q5T124 520 aa16.49■□□□□ 0.23
TRIM28-207ENST00000597136 SLC24A5Q71RS6 500 aa16.49■□□□□ 0.23
TRIM28-207ENST00000597136 CCDC65Q8IXS2 484 aa16.49■□□□□ 0.23
TRIM28-207ENST00000597136 FIZ1Q96SL8 496 aa16.49■□□□□ 0.23
TRIM28-207ENST00000597136 EXOC1Q9NV70 894 aa16.49■□□□□ 0.23
TRIM28-207ENST00000597136 RMND1Q9NWS8 449 aa16.49■□□□□ 0.23
TRIM28-207ENST00000597136 ARHGAP28Q9P2N2 729 aa16.49■□□□□ 0.23
TRIM28-207ENST00000597136 REV3LO60673 3130 aa16.49■□□□□ 0.23
TRIM28-207ENST00000597136 PLXNA4Q9HCM2 1894 aa16.49■□□□□ 0.23
TRIM28-207ENST00000597136 LCHNA4D1U4 455 aa16.48■□□□□ 0.23
TRIM28-207ENST00000597136 K7ERI5 159 aa16.48■□□□□ 0.23
TRIM28-207ENST00000597136 ERLIN2O94905 339 aa16.48■□□□□ 0.23
TRIM28-207ENST00000597136 ARHGEF15O94989 841 aa16.48■□□□□ 0.23
TRIM28-207ENST00000597136 NMT1P30419 496 aaKnown RBP16.48■□□□□ 0.23
TRIM28-207ENST00000597136 GATMP50440 423 aa16.48■□□□□ 0.23
TRIM28-207ENST00000597136 FXR1P51114 621 aaKnown RBP eCLIP16.48■□□□□ 0.231e-6■■□□□ 14
TRIM28-207ENST00000597136 SMAD3P84022 425 aaKnown RBP16.48■□□□□ 0.23
TRIM28-207ENST00000597136 COASYQ13057 564 aa16.48■□□□□ 0.23
TRIM28-207ENST00000597136 DMP1Q13316 513 aaPredicted RBP16.48■□□□□ 0.23
TRIM28-207ENST00000597136 MORC3Q14149 939 aa16.48■□□□□ 0.23
TRIM28-207ENST00000597136 ISM2Q6H9L7 571 aa16.48■□□□□ 0.23
TRIM28-207ENST00000597136 TWF2Q6IBS0 349 aaKnown RBP16.48■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms