RNA–Protein interactions for RNA: ENST00000559389.1

SNX1-206, Transcript of sorting nexin 1, humanhuman

TSL 5

Gene SNX1, Length 753 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-206ENST00000559389 ST6GALNAC4Q9H4F1 302 aa23.88■■□□□ 1.41
SNX1-206ENST00000559389 DACT1Q9NYF0 836 aa23.88■■□□□ 1.41
SNX1-206ENST00000559389 PVALEFA0A1B0GWK0 134 aa23.87■■□□□ 1.41
SNX1-206ENST00000559389 DENND3A2RUS2 1198 aa23.87■■□□□ 1.41
SNX1-206ENST00000559389 ZBBXA8MT70 800 aa23.87■■□□□ 1.41
SNX1-206ENST00000559389 B4GALT5O43286 388 aa23.87■■□□□ 1.41
SNX1-206ENST00000559389 KLRC4O43908 158 aa23.87■■□□□ 1.41
SNX1-206ENST00000559389 EDN1P05305 212 aa23.87■■□□□ 1.41
SNX1-206ENST00000559389 ARF4P18085 180 aaPredicted RBP23.87■■□□□ 1.41
SNX1-206ENST00000559389 DPYDQ12882 1025 aa23.87■■□□□ 1.41
SNX1-206ENST00000559389 HERC4Q5GLZ8 1057 aaPredicted RBP23.87■■□□□ 1.41
SNX1-206ENST00000559389 TDHQ8IZJ6 230 aa23.87■■□□□ 1.41
SNX1-206ENST00000559389 SLC17A8Q8NDX2 589 aa23.87■■□□□ 1.41
SNX1-206ENST00000559389 CHST12Q9NRB3 414 aa23.87■■□□□ 1.41
SNX1-206ENST00000559389 CEP290O15078 2479 aa23.86■■□□□ 1.41
SNX1-206ENST00000559389 K7ERI5 159 aa23.86■■□□□ 1.41
SNX1-206ENST00000559389 ACKR2O00590 384 aa23.86■■□□□ 1.41
SNX1-206ENST00000559389 PPP1R37O75864 691 aa23.86■■□□□ 1.41
SNX1-206ENST00000559389 NMT1P30419 496 aaKnown RBP23.86■■□□□ 1.41
SNX1-206ENST00000559389 AXLP30530 894 aa23.86■■□□□ 1.41
SNX1-206ENST00000559389 HOXA11P31270 313 aaPredicted RBP23.86■■□□□ 1.41
SNX1-206ENST00000559389 RTN4RL1Q86UN2 441 aaPredicted RBP23.86■■□□□ 1.41
SNX1-206ENST00000559389 ADAM2Q99965 735 aa23.86■■□□□ 1.41
SNX1-206ENST00000559389 RGS18Q9NS28 235 aa23.86■■□□□ 1.41
SNX1-206ENST00000559389 C1orf112Q9NSG2 853 aa23.86■■□□□ 1.41
SNX1-206ENST00000559389 A0A1W2PPC1 479 aa23.85■■□□□ 1.41
SNX1-206ENST00000559389 TTLL13PA6NNM8 815 aa23.85■■□□□ 1.41
SNX1-206ENST00000559389 ENPP3O14638 875 aa23.85■■□□□ 1.41
SNX1-206ENST00000559389 ABCD1P33897 745 aa23.85■■□□□ 1.41
SNX1-206ENST00000559389 KCNJ6P48051 423 aa23.85■■□□□ 1.41
SNX1-206ENST00000559389 DEFB103AP81534 67 aa23.85■■□□□ 1.41
SNX1-206ENST00000559389 PRPF4BQ13523 1007 aaKnown RBP23.85■■□□□ 1.41
SNX1-206ENST00000559389 LIN28BQ6ZN17 250 aaKnown RBP eCLIP23.85■■□□□ 1.41
SNX1-206ENST00000559389 ELOA2Q8IYF1 753 aaPredicted RBP23.85■■□□□ 1.41
SNX1-206ENST00000559389 HVCN1Q96D96 273 aa23.85■■□□□ 1.41
SNX1-206ENST00000559389 CCDC51Q96ER9 411 aa23.85■■□□□ 1.41
SNX1-206ENST00000559389 TRAIPQ9BWF2 469 aa23.85■■□□□ 1.41
SNX1-206ENST00000559389 FGFBP2Q9BYJ0 223 aa23.85■■□□□ 1.41
SNX1-206ENST00000559389 MRPL44Q9H9J2 332 aaKnown RBP23.85■■□□□ 1.41
SNX1-206ENST00000559389 COLQQ9Y215 455 aaPredicted RBP23.85■■□□□ 1.41
SNX1-206ENST00000559389 C9IYK1 514 aa23.84■■□□□ 1.41
SNX1-206ENST00000559389 AMHP03971 560 aa23.84■■□□□ 1.41
SNX1-206ENST00000559389 ZSCAN20P17040 1043 aaPredicted RBP23.84■■□□□ 1.41
SNX1-206ENST00000559389 CASP5P51878 434 aa23.84■■□□□ 1.41
SNX1-206ENST00000559389 GTF2BQ00403 316 aa23.84■■□□□ 1.41
SNX1-206ENST00000559389 FAM26FQ5R3K3 315 aa23.84■■□□□ 1.41
SNX1-206ENST00000559389 NOTUMQ6P988 496 aa23.84■■□□□ 1.41
SNX1-206ENST00000559389 ZNF720Q7Z2F6 126 aa23.84■■□□□ 1.41
SNX1-206ENST00000559389 CPB2Q96IY4 423 aa23.84■■□□□ 1.41
SNX1-206ENST00000559389 SLC9A7Q96T83 725 aa23.84■■□□□ 1.41
SNX1-206ENST00000559389 STRA6Q9BX79 667 aa23.84■■□□□ 1.41
SNX1-206ENST00000559389 MRPL4Q9BYD3 311 aaKnown RBP23.84■■□□□ 1.41
SNX1-206ENST00000559389 EXOC1Q9NV70 894 aa23.84■■□□□ 1.41
SNX1-206ENST00000559389 TBC1D7Q9P0N9 293 aa23.84■■□□□ 1.41
SNX1-206ENST00000559389 TBX20Q9UMR3 447 aa23.84■■□□□ 1.41
SNX1-206ENST00000559389 SLC4A7Q9Y6M7 1214 aa23.84■■□□□ 1.41
SNX1-206ENST00000559389 RPN1P04843 607 aaKnown RBP23.83■■□□□ 1.41
SNX1-206ENST00000559389 NCBP1Q09161 790 aaKnown RBP23.83■■□□□ 1.41
SNX1-206ENST00000559389 STRN3Q13033 797 aa23.83■■□□□ 1.41
SNX1-206ENST00000559389 PNOCQ13519 176 aa23.83■■□□□ 1.41
SNX1-206ENST00000559389 ALCAMQ13740 583 aa23.83■■□□□ 1.41
SNX1-206ENST00000559389 KMT5BQ4FZB7 885 aa23.83■■□□□ 1.41
SNX1-206ENST00000559389 ZC2HC1CQ53FD0 456 aaPredicted RBP23.83■■□□□ 1.41
SNX1-206ENST00000559389 UBXN11Q5T124 520 aa23.83■■□□□ 1.41
SNX1-206ENST00000559389 NT5DC1Q5TFE4 455 aa23.83■■□□□ 1.41
SNX1-206ENST00000559389 TWF2Q6IBS0 349 aaKnown RBP23.83■■□□□ 1.41
SNX1-206ENST00000559389 SLC24A5Q71RS6 500 aa23.83■■□□□ 1.41
SNX1-206ENST00000559389 MAP4K3Q8IVH8 894 aa23.83■■□□□ 1.41
SNX1-206ENST00000559389 HPS3Q969F9 1004 aa23.83■■□□□ 1.41
SNX1-206ENST00000559389 PDZD7Q9H5P4 517 aa23.83■■□□□ 1.41
SNX1-206ENST00000559389 HOOK1Q9UJC3 728 aaKnown RBP23.83■■□□□ 1.41
SNX1-206ENST00000559389 USP20Q9Y2K6 914 aa23.83■■□□□ 1.41
SNX1-206ENST00000559389 A0A1B0GUA9 196 aa23.82■■□□□ 1.4
SNX1-206ENST00000559389 GCNT3O95395 438 aa23.82■■□□□ 1.4
SNX1-206ENST00000559389 MYBP10242 640 aa23.82■■□□□ 1.4
SNX1-206ENST00000559389 MCM4P33991 863 aa23.82■■□□□ 1.4
SNX1-206ENST00000559389 SARSP49591 514 aaKnown RBP23.82■■□□□ 1.4
SNX1-206ENST00000559389 MYOCDQ8IZQ8 938 aa23.82■■□□□ 1.4
SNX1-206ENST00000559389 COL4A6Q14031 1691 aa23.81■■□□□ 1.4
SNX1-206ENST00000559389 N4BP3O15049 544 aa23.81■■□□□ 1.4
SNX1-206ENST00000559389 PIGRP01833 764 aa23.81■■□□□ 1.4
SNX1-206ENST00000559389 ATP2A2P16615 1042 aaKnown RBP23.81■■□□□ 1.4
SNX1-206ENST00000559389 RAB27AP51159 221 aa23.81■■□□□ 1.4
SNX1-206ENST00000559389 KCNB1Q14721 858 aa23.81■■□□□ 1.4
SNX1-206ENST00000559389 ATF7IP2Q5U623 682 aa23.81■■□□□ 1.4
SNX1-206ENST00000559389 ZPBP2Q6X784 338 aa23.81■■□□□ 1.4
SNX1-206ENST00000559389 GLIS3Q8NEA6 775 aa23.81■■□□□ 1.4
SNX1-206ENST00000559389 PHOSPHO2Q8TCD6 241 aa23.81■■□□□ 1.4
SNX1-206ENST00000559389 TARS2Q9BW92 718 aaKnown RBP23.81■■□□□ 1.4
SNX1-206ENST00000559389 FAM105AQ9NUU6 356 aa23.81■■□□□ 1.4
SNX1-206ENST00000559389 TNFSF13BQ9Y275 285 aa23.81■■□□□ 1.4
SNX1-206ENST00000559389 TTC3P53804 2025 aa23.81■■□□□ 1.4
SNX1-206ENST00000559389 A0A0U1RQF3 1178 aa23.8■■□□□ 1.4
SNX1-206ENST00000559389 EIF3DO15371 548 aaKnown RBP eCLIP23.8■■□□□ 1.4
SNX1-206ENST00000559389 RHOBTB3O94955 611 aa23.8■■□□□ 1.4
SNX1-206ENST00000559389 FAM189BP81408 668 aa23.8■■□□□ 1.4
SNX1-206ENST00000559389 TMEM132AQ24JP5 1023 aa23.8■■□□□ 1.4
SNX1-206ENST00000559389 L1TD1Q5T7N2 865 aaKnown RBP23.8■■□□□ 1.4
SNX1-206ENST00000559389 EEF1DP3Q658K8 133 aa23.8■■□□□ 1.4
SNX1-206ENST00000559389 SLC27A1Q6PCB7 646 aa23.8■■□□□ 1.4
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms