RNA–Protein interactions for RNA: ENST00000542641.5

YBX3-213, Transcript of Y-box binding protein 3, humanhuman

TSL 4

Gene YBX3, Length 669 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-213ENST00000542641 STK4Q13043 487 aa12.76□□□□□ -0.37
YBX3-213ENST00000542641 PAK2Q13177 524 aa12.76□□□□□ -0.37
YBX3-213ENST00000542641 GPNMBQ14956 572 aa12.76□□□□□ -0.37
YBX3-213ENST00000542641 MAPK6Q16659 721 aa12.76□□□□□ -0.37
YBX3-213ENST00000542641 ZC2HC1CQ53FD0 456 aaPredicted RBP12.76□□□□□ -0.37
YBX3-213ENST00000542641 NT5DC1Q5TFE4 455 aa12.76□□□□□ -0.37
YBX3-213ENST00000542641 ISM2Q6H9L7 571 aa12.76□□□□□ -0.37
YBX3-213ENST00000542641 STXBP4Q6ZWJ1 553 aa12.76□□□□□ -0.37
YBX3-213ENST00000542641 CATSPER4Q7RTX7 472 aa12.76□□□□□ -0.37
YBX3-213ENST00000542641 DEFB128Q7Z7B8 93 aa12.76□□□□□ -0.37
YBX3-213ENST00000542641 FAM228AQ86W67 206 aa12.76□□□□□ -0.37
YBX3-213ENST00000542641 BADQ92934 168 aa12.76□□□□□ -0.37
YBX3-213ENST00000542641 OSBPL7Q9BZF2 842 aa12.76□□□□□ -0.37
YBX3-213ENST00000542641 ST6GALNAC4Q9H4F1 302 aa12.76□□□□□ -0.37
YBX3-213ENST00000542641 TMEM134Q9H6X4 195 aa12.76□□□□□ -0.37
YBX3-213ENST00000542641 AGO3Q9H9G7 860 aaKnown RBP12.76□□□□□ -0.37
YBX3-213ENST00000542641 PRMT7Q9NVM4 692 aaPredicted RBP12.76□□□□□ -0.37
YBX3-213ENST00000542641 TMEM63CQ9P1W3 806 aa12.76□□□□□ -0.37
YBX3-213ENST00000542641 MAN1B1Q9UKM7 699 aa12.76□□□□□ -0.37
YBX3-213ENST00000542641 PADI3Q9ULW8 664 aa12.76□□□□□ -0.37
YBX3-213ENST00000542641 TBX20Q9UMR3 447 aa12.76□□□□□ -0.37
YBX3-213ENST00000542641 ST3GAL5Q9UNP4 418 aa12.76□□□□□ -0.37
YBX3-213ENST00000542641 PHLPP2Q6ZVD8 1323 aa12.76□□□□□ -0.37
YBX3-213ENST00000542641 BIN1O00499 593 aa12.75□□□□□ -0.37
YBX3-213ENST00000542641 ACKR2O00590 384 aa12.75□□□□□ -0.37
YBX3-213ENST00000542641 ERLIN2O94905 339 aa12.75□□□□□ -0.37
YBX3-213ENST00000542641 MYBP10242 640 aa12.75□□□□□ -0.37
YBX3-213ENST00000542641 CSF2RAP15509 400 aa12.75□□□□□ -0.37
YBX3-213ENST00000542641 CASP5P51878 434 aa12.75□□□□□ -0.37
YBX3-213ENST00000542641 ALCAMQ13740 583 aa12.75□□□□□ -0.37
YBX3-213ENST00000542641 PCBP1Q15365 356 aaKnown RBP eCLIP12.75□□□□□ -0.37
YBX3-213ENST00000542641 GLIS3Q8NEA6 775 aa12.75□□□□□ -0.37
YBX3-213ENST00000542641 LBHD1Q9BQE6 289 aaPredicted RBP12.75□□□□□ -0.37
YBX3-213ENST00000542641 FGFBP2Q9BYJ0 223 aa12.75□□□□□ -0.37
YBX3-213ENST00000542641 IFIH1Q9BYX4 1025 aaKnown RBP12.75□□□□□ -0.37
YBX3-213ENST00000542641 GTPBP4Q9BZE4 634 aaKnown RBP12.75□□□□□ -0.37
YBX3-213ENST00000542641 CCDC113Q9H0I3 377 aa12.75□□□□□ -0.37
YBX3-213ENST00000542641 FZD8Q9H461 694 aa12.75□□□□□ -0.37
YBX3-213ENST00000542641 PCDH10Q9P2E7 1040 aa12.75□□□□□ -0.37
YBX3-213ENST00000542641 RBAK-RBAKDNI3L0D1 243 aa12.74□□□□□ -0.37
YBX3-213ENST00000542641 TSPAN1O60635 241 aa12.74□□□□□ -0.37
YBX3-213ENST00000542641 PRPF6O94906 941 aaKnown RBP12.74□□□□□ -0.37
YBX3-213ENST00000542641 CXCL10P02778 98 aa12.74□□□□□ -0.37
YBX3-213ENST00000542641 PRKCBP05771 671 aa12.74□□□□□ -0.37
YBX3-213ENST00000542641 FPGSQ05932 587 aa12.74□□□□□ -0.37
YBX3-213ENST00000542641 PRPF4BQ13523 1007 aaKnown RBP12.74□□□□□ -0.37
YBX3-213ENST00000542641 FAM187BQ17R55 369 aa12.74□□□□□ -0.37
YBX3-213ENST00000542641 TMEM132AQ24JP5 1023 aa12.74□□□□□ -0.37
YBX3-213ENST00000542641 PLEKHG4Q58EX7 1191 aa12.74□□□□□ -0.37
YBX3-213ENST00000542641 L1TD1Q5T7N2 865 aaKnown RBP12.74□□□□□ -0.37
YBX3-213ENST00000542641 ZNF658Q5TYW1 1059 aaPredicted RBP12.74□□□□□ -0.37
YBX3-213ENST00000542641 TAS1R3Q7RTX0 852 aa12.74□□□□□ -0.37
YBX3-213ENST00000542641 RPUSD2Q8IZ73 545 aaKnown RBP12.74□□□□□ -0.37
YBX3-213ENST00000542641 KIAA0895Q8NCT3 520 aa12.74□□□□□ -0.37
YBX3-213ENST00000542641 DBF4BQ8NFT6 615 aa12.74□□□□□ -0.37
YBX3-213ENST00000542641 SEPT8Q92599 483 aa12.74□□□□□ -0.37
YBX3-213ENST00000542641 KCNN1Q92952 543 aa12.74□□□□□ -0.37
YBX3-213ENST00000542641 HVCN1Q96D96 273 aa12.74□□□□□ -0.37
YBX3-213ENST00000542641 PRIMPOLQ96LW4 560 aa12.74□□□□□ -0.37
YBX3-213ENST00000542641 STRA6Q9BX79 667 aa12.74□□□□□ -0.37
YBX3-213ENST00000542641 ERVK-5Q9HDB9 667 aa12.74□□□□□ -0.37
YBX3-213ENST00000542641 GDAQ9Y2T3 454 aa12.74□□□□□ -0.37
YBX3-213ENST00000542641 ALPK3Q96L96 1907 aa12.73□□□□□ -0.37
YBX3-213ENST00000542641 EIF3DO15371 548 aaKnown RBP eCLIP12.73□□□□□ -0.37
YBX3-213ENST00000542641 B4GALT5O43286 388 aa12.73□□□□□ -0.37
YBX3-213ENST00000542641 PPP1R37O75864 691 aa12.73□□□□□ -0.37
YBX3-213ENST00000542641 LETM1O95202 739 aaPredicted RBP12.73□□□□□ -0.37
YBX3-213ENST00000542641 KIF20AO95235 890 aa12.73□□□□□ -0.37
YBX3-213ENST00000542641 KCNA1Q09470 495 aa12.73□□□□□ -0.37
YBX3-213ENST00000542641 PPIGQ13427 754 aaKnown RBP eCLIP12.73□□□□□ -0.373e-7■■□□□ 13.1
YBX3-213ENST00000542641 MORC3Q14149 939 aa12.73□□□□□ -0.37
YBX3-213ENST00000542641 AMHR2Q16671 573 aa12.73□□□□□ -0.37
YBX3-213ENST00000542641 RBM43Q6ZSC3 357 aaKnown RBP12.73□□□□□ -0.37
YBX3-213ENST00000542641 EPM2AIP1Q7L775 607 aaPredicted RBP12.73□□□□□ -0.37
YBX3-213ENST00000542641 MAP4K3Q8IVH8 894 aa12.73□□□□□ -0.37
YBX3-213ENST00000542641 SMYD4Q8IYR2 804 aaPredicted RBP12.73□□□□□ -0.37
YBX3-213ENST00000542641 MYOCDQ8IZQ8 938 aa12.73□□□□□ -0.37
YBX3-213ENST00000542641 SYCP3Q8IZU3 236 aa12.73□□□□□ -0.37
YBX3-213ENST00000542641 TRIML1Q8N9V2 468 aa12.73□□□□□ -0.37
YBX3-213ENST00000542641 ZNF507Q8TCN5 953 aa12.73□□□□□ -0.37
YBX3-213ENST00000542641 SCFD1Q8WVM8 642 aa12.73□□□□□ -0.37
YBX3-213ENST00000542641 APBB2Q92870 758 aa12.73□□□□□ -0.37
YBX3-213ENST00000542641 BICD1Q96G01 975 aa12.73□□□□□ -0.37
YBX3-213ENST00000542641 ACCSQ96QU6 501 aa12.73□□□□□ -0.37
YBX3-213ENST00000542641 MRPL4Q9BYD3 311 aaKnown RBP12.73□□□□□ -0.37
YBX3-213ENST00000542641 TMEM206Q9H813 350 aa12.73□□□□□ -0.37
YBX3-213ENST00000542641 AGPAT5Q9NUQ2 364 aa12.73□□□□□ -0.37
YBX3-213ENST00000542641 EXOC7Q9UPT5 735 aa12.73□□□□□ -0.37
YBX3-213ENST00000542641 MAPK8IP1Q9UQF2 711 aa12.73□□□□□ -0.37
YBX3-213ENST00000542641 PIN4Q9Y237 131 aaKnown RBP12.73□□□□□ -0.37
YBX3-213ENST00000542641 USP20Q9Y2K6 914 aa12.73□□□□□ -0.37
YBX3-213ENST00000542641 UBE4BO95155 1302 aa12.72□□□□□ -0.37
YBX3-213ENST00000542641 CNTNAP2Q9UHC6 1331 aa12.72□□□□□ -0.37
YBX3-213ENST00000542641 TTLL13PA6NNM8 815 aa12.72□□□□□ -0.37
YBX3-213ENST00000542641 HNRNPDLO14979 420 aaKnown RBP12.72□□□□□ -0.37
YBX3-213ENST00000542641 EDN1P05305 212 aa12.72□□□□□ -0.37
YBX3-213ENST00000542641 PFKMP08237 780 aa12.72□□□□□ -0.37
YBX3-213ENST00000542641 ACRP10323 421 aa12.72□□□□□ -0.37
YBX3-213ENST00000542641 ZSCAN20P17040 1043 aaPredicted RBP12.72□□□□□ -0.37
YBX3-213ENST00000542641 ARF4P18085 180 aaPredicted RBP12.72□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 56.4 ms