RNA–Protein interactions for RNA: ENST00000533079.5

CAPN1-223, Transcript of calpain 1, human

TSL 3

Gene CAPN1, Length 878 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CAPN1-223	ENST00000533079	SPECC1	Q5M775	1068 aa		13.97	□□□□□ -0.17
CAPN1-223	ENST00000533079	CREB3L3	Q68CJ9	461 aa		13.97	□□□□□ -0.17
CAPN1-223	ENST00000533079	DCLRE1A	Q6PJP8	1040 aa		13.97	□□□□□ -0.17
CAPN1-223	ENST00000533079	CATSPER4	Q7RTX7	472 aa		13.97	□□□□□ -0.17
CAPN1-223	ENST00000533079	SUMF1	Q8NBK3	374 aa		13.97	□□□□□ -0.17
CAPN1-223	ENST00000533079	BICD2	Q8TD16	824 aa		13.97	□□□□□ -0.17
CAPN1-223	ENST00000533079	RSAD2	Q8WXG1	361 aa		13.97	□□□□□ -0.17
CAPN1-223	ENST00000533079	LRRC2	Q9BYS8	371 aa		13.97	□□□□□ -0.17
CAPN1-223	ENST00000533079	LSG1	Q9H089	658 aa	Known RBP	13.97	□□□□□ -0.17
CAPN1-223	ENST00000533079	UBN1	Q9NPG3	1134 aa		13.97	□□□□□ -0.17
CAPN1-223	ENST00000533079	SEPT9	Q9UHD8	586 aa	Predicted RBP	13.97	□□□□□ -0.17
CAPN1-223	ENST00000533079	FBXO4	Q9UKT5	387 aa		13.97	□□□□□ -0.17
CAPN1-223	ENST00000533079	FAN1	Q9Y2M0	1017 aa		13.97	□□□□□ -0.17
CAPN1-223	ENST00000533079	PATJ	Q8NI35	1801 aa		13.97	□□□□□ -0.17
CAPN1-223	ENST00000533079		A0A087WZ62	844 aa		13.96	□□□□□ -0.17
CAPN1-223	ENST00000533079	GOLGA8A	A7E2F4	631 aa		13.96	□□□□□ -0.17
CAPN1-223	ENST00000533079	MEIS3P2	A8K0S8	358 aa		13.96	□□□□□ -0.17
CAPN1-223	ENST00000533079	GOLGA8B	A8MQT2	603 aa		13.96	□□□□□ -0.17
CAPN1-223	ENST00000533079	NRP1	O14786	923 aa		13.96	□□□□□ -0.17
CAPN1-223	ENST00000533079	B4GALT3	O60512	393 aa		13.96	□□□□□ -0.17
CAPN1-223	ENST00000533079	CSDE1	O75534	798 aa	Known RBP	13.96	□□□□□ -0.17
CAPN1-223	ENST00000533079	SSB	P05455	408 aa	Known RBP eCLIP	13.96	□□□□□ -0.17
CAPN1-223	ENST00000533079	MAGEA9	P43362	315 aa		13.96	□□□□□ -0.17
CAPN1-223	ENST00000533079	GLUD2	P49448	558 aa		13.96	□□□□□ -0.17
CAPN1-223	ENST00000533079	AK2	P54819	239 aa		13.96	□□□□□ -0.17
CAPN1-223	ENST00000533079	STARD6	P59095	220 aa		13.96	□□□□□ -0.17
CAPN1-223	ENST00000533079	CREM	Q03060	361 aa		13.96	□□□□□ -0.17
CAPN1-223	ENST00000533079	DRP2	Q13474	957 aa		13.96	□□□□□ -0.17
CAPN1-223	ENST00000533079	COL9A3	Q14050	684 aa	Predicted RBP	13.96	□□□□□ -0.17
CAPN1-223	ENST00000533079	NECTIN1	Q15223	517 aa		13.96	□□□□□ -0.17
CAPN1-223	ENST00000533079	UGCG	Q16739	394 aa		13.96	□□□□□ -0.17
CAPN1-223	ENST00000533079	RNF20	Q5VTR2	975 aa		13.96	□□□□□ -0.17
CAPN1-223	ENST00000533079	AGMO	Q6ZNB7	445 aa		13.96	□□□□□ -0.17
CAPN1-223	ENST00000533079	ZNF280B	Q86YH2	543 aa		13.96	□□□□□ -0.17
CAPN1-223	ENST00000533079	GPR65	Q8IYL9	337 aa		13.96	□□□□□ -0.17
CAPN1-223	ENST00000533079	RNF168	Q8IYW5	571 aa	Predicted RBP	13.96	□□□□□ -0.17
CAPN1-223	ENST00000533079	SMG7	Q92540	1137 aa	Known RBP	13.96	□□□□□ -0.17
CAPN1-223	ENST00000533079	SECISBP2L	Q93073	1101 aa	Known RBP	13.96	□□□□□ -0.17
CAPN1-223	ENST00000533079	MYADM	Q96S97	322 aa		13.96	□□□□□ -0.17
CAPN1-223	ENST00000533079	FDXACB1	Q9BRP7	624 aa	Predicted RBP	13.96	□□□□□ -0.17
CAPN1-223	ENST00000533079	TEKT3	Q9BXF9	490 aa		13.96	□□□□□ -0.17
CAPN1-223	ENST00000533079	RXFP1	Q9HBX9	757 aa		13.96	□□□□□ -0.17
CAPN1-223	ENST00000533079	PCDHB2	Q9Y5E7	798 aa		13.96	□□□□□ -0.17
CAPN1-223	ENST00000533079	CCDC196	A0A1B0GTZ2	297 aa		13.95	□□□□□ -0.18
CAPN1-223	ENST00000533079	TEX28	O15482	410 aa		13.95	□□□□□ -0.18
CAPN1-223	ENST00000533079	DDHD2	O94830	711 aa		13.95	□□□□□ -0.18
CAPN1-223	ENST00000533079	LAMP2	P13473	410 aa		13.95	□□□□□ -0.18
CAPN1-223	ENST00000533079	HTR4	Q13639	388 aa		13.95	□□□□□ -0.18
CAPN1-223	ENST00000533079	RSPO4	Q2I0M5	234 aa	Predicted RBP	13.95	□□□□□ -0.18
CAPN1-223	ENST00000533079	LONRF3	Q496Y0	759 aa		13.95	□□□□□ -0.18
CAPN1-223	ENST00000533079	MTERF2	Q49AM1	385 aa		13.95	□□□□□ -0.18
CAPN1-223	ENST00000533079	LRCH2	Q5VUJ6	765 aa		13.95	□□□□□ -0.18
CAPN1-223	ENST00000533079	MRPL10	Q7Z7H8	261 aa	Known RBP	13.95	□□□□□ -0.18
CAPN1-223	ENST00000533079	RHPN2	Q8IUC4	686 aa		13.95	□□□□□ -0.18
CAPN1-223	ENST00000533079	CNNM3	Q8NE01	707 aa		13.95	□□□□□ -0.18
CAPN1-223	ENST00000533079	SLC5A5	Q92911	643 aa		13.95	□□□□□ -0.18
CAPN1-223	ENST00000533079	PHKB	Q93100	1093 aa		13.95	□□□□□ -0.18
CAPN1-223	ENST00000533079	ZNF707	Q96C28	371 aa	Predicted RBP	13.95	□□□□□ -0.18
CAPN1-223	ENST00000533079	CNTNAP3B	Q96NU0	1288 aa		13.95	□□□□□ -0.18
CAPN1-223	ENST00000533079	CEP89	Q96ST8	783 aa		13.95	□□□□□ -0.18
CAPN1-223	ENST00000533079	CNTNAP3	Q9BZ76	1288 aa		13.95	□□□□□ -0.18
CAPN1-223	ENST00000533079	APOBEC3C	Q9NRW3	190 aa	Known RBP eCLIP	13.95	□□□□□ -0.18
CAPN1-223	ENST00000533079	SUCLA2	Q9P2R7	463 aa	Predicted RBP	13.95	□□□□□ -0.18
CAPN1-223	ENST00000533079	NCDN	Q9UBB6	729 aa		13.95	□□□□□ -0.18
CAPN1-223	ENST00000533079	PCDHGA2	Q9Y5H1	932 aa		13.95	□□□□□ -0.18
CAPN1-223	ENST00000533079	PRR5-ARHGAP8	B1AHC4	643 aa		13.94	□□□□□ -0.18
CAPN1-223	ENST00000533079	C2CD2L	O14523	706 aa		13.94	□□□□□ -0.18
CAPN1-223	ENST00000533079	MSH4	O15457	936 aa		13.94	□□□□□ -0.18
CAPN1-223	ENST00000533079	CHMP2A	O43633	222 aa		13.94	□□□□□ -0.18
CAPN1-223	ENST00000533079	MAF	O75444	373 aa	Predicted RBP	13.94	□□□□□ -0.18
CAPN1-223	ENST00000533079	EFEMP2	O95967	443 aa		13.94	□□□□□ -0.18
CAPN1-223	ENST00000533079	ARHGAP8	P85298	464 aa		13.94	□□□□□ -0.18
CAPN1-223	ENST00000533079	DSG1	Q02413	1049 aa		13.94	□□□□□ -0.18
CAPN1-223	ENST00000533079	LMNB2	Q03252	620 aa		13.94	□□□□□ -0.18
CAPN1-223	ENST00000533079	GET4	Q7L5D6	327 aa	Predicted RBP	13.94	□□□□□ -0.18
CAPN1-223	ENST00000533079	EXOC8	Q8IYI6	725 aa		13.94	□□□□□ -0.18
CAPN1-223	ENST00000533079	CCDC148	Q8NFR7	591 aa		13.94	□□□□□ -0.18
CAPN1-223	ENST00000533079	NLRP4	Q96MN2	994 aa		13.94	□□□□□ -0.18
CAPN1-223	ENST00000533079	BCO2	Q9BYV7	579 aa		13.94	□□□□□ -0.18
CAPN1-223	ENST00000533079	OSBPL6	Q9BZF3	934 aa		13.94	□□□□□ -0.18
CAPN1-223	ENST00000533079	UNC45A	Q9H3U1	944 aa		13.94	□□□□□ -0.18
CAPN1-223	ENST00000533079	PIDD1	Q9HB75	910 aa		13.94	□□□□□ -0.18
CAPN1-223	ENST00000533079	MARCH5	Q9NX47	278 aa		13.94	□□□□□ -0.18
CAPN1-223	ENST00000533079	PPME1	Q9Y570	386 aa		13.94	□□□□□ -0.18
CAPN1-223	ENST00000533079	NUMBL	Q9Y6R0	609 aa		13.94	□□□□□ -0.18
CAPN1-223	ENST00000533079	NID2	Q14112	1375 aa		13.94	□□□□□ -0.18
CAPN1-223	ENST00000533079	KANSL1L	A0AUZ9	987 aa		13.93	□□□□□ -0.18
CAPN1-223	ENST00000533079	LAMTOR5	O43504	91 aa		13.93	□□□□□ -0.18
CAPN1-223	ENST00000533079	NR1I2	O75469	434 aa		13.93	□□□□□ -0.18
CAPN1-223	ENST00000533079	RFPL2	O75678	378 aa		13.93	□□□□□ -0.18
CAPN1-223	ENST00000533079	NCL	P19338	710 aa	Known RBP	13.93	□□□□□ -0.18
CAPN1-223	ENST00000533079	USP11	P51784	963 aa		13.93	□□□□□ -0.18
CAPN1-223	ENST00000533079	PRKCQ	Q04759	706 aa		13.93	□□□□□ -0.18
CAPN1-223	ENST00000533079	PCBP1	Q15365	356 aa	Known RBP eCLIP	13.93	□□□□□ -0.18
CAPN1-223	ENST00000533079	VARS2	Q5ST30	1063 aa	Known RBP	13.93	□□□□□ -0.18
CAPN1-223	ENST00000533079	KIAA0319	Q5VV43	1072 aa		13.93	□□□□□ -0.18
CAPN1-223	ENST00000533079	RSPO2	Q6UXX9	243 aa	Predicted RBP	13.93	□□□□□ -0.18
CAPN1-223	ENST00000533079	MTSS1L	Q765P7	747 aa		13.93	□□□□□ -0.18
CAPN1-223	ENST00000533079	SRGAP1	Q7Z6B7	1085 aa		13.93	□□□□□ -0.18
CAPN1-223	ENST00000533079	MAML2	Q8IZL2	1156 aa	Predicted RBP	13.93	□□□□□ -0.18

Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms