RNA–Protein interactions for RNA: ENST00000509277.5

LIMCH1-209, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2 BASIC

Gene LIMCH1, Length 3,474 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-209ENST00000509277 OSTNP61366 133 aa9.44□□□□□ -0.9
LIMCH1-209ENST00000509277 ZNF200P98182 395 aaPredicted RBP9.44□□□□□ -0.9
LIMCH1-209ENST00000509277 TMEM119Q4V9L6 283 aa9.44□□□□□ -0.9
LIMCH1-209ENST00000509277 ARSHQ5FYA8 562 aa9.44□□□□□ -0.9
LIMCH1-209ENST00000509277 CNNM4Q6P4Q7 775 aa9.44□□□□□ -0.9
LIMCH1-209ENST00000509277 ABHD15Q6UXT9 468 aa9.44□□□□□ -0.9
LIMCH1-209ENST00000509277 SND1Q7KZF4 910 aaKnown RBP eCLIP9.44□□□□□ -0.9
LIMCH1-209ENST00000509277 SLC35F6Q8N357 371 aa9.44□□□□□ -0.9
LIMCH1-209ENST00000509277 GIMAP8Q8ND71 665 aaPredicted RBP9.44□□□□□ -0.9
LIMCH1-209ENST00000509277 INO80BQ9C086 356 aaPredicted RBP9.44□□□□□ -0.9
LIMCH1-209ENST00000509277 POLR3FQ9H1D9 316 aaPredicted RBP9.44□□□□□ -0.9
LIMCH1-209ENST00000509277 VPS16Q9H269 839 aa9.44□□□□□ -0.9
LIMCH1-209ENST00000509277 PPANQ9NQ55 473 aaKnown RBP9.44□□□□□ -0.9
LIMCH1-209ENST00000509277 SYNGAP1Q96PV0 1343 aa9.44□□□□□ -0.9
LIMCH1-209ENST00000509277 CTAGE9A4FU28 777 aa9.44□□□□□ -0.9
LIMCH1-209ENST00000509277 GOLGA8IPA6NC78 632 aa9.44□□□□□ -0.9
LIMCH1-209ENST00000509277 GOLGA8JA6NMD2 632 aa9.44□□□□□ -0.9
LIMCH1-209ENST00000509277 TISP43B9A030 160 aa9.44□□□□□ -0.9
LIMCH1-209ENST00000509277 PPFIA4O75335 1185 aa9.44□□□□□ -0.9
LIMCH1-209ENST00000509277 TGFB3P10600 412 aa9.44□□□□□ -0.9
LIMCH1-209ENST00000509277 AKR1A1P14550 325 aa9.44□□□□□ -0.9
LIMCH1-209ENST00000509277 EDNRBP24530 442 aa9.44□□□□□ -0.9
LIMCH1-209ENST00000509277 SATB1Q01826 763 aa9.44□□□□□ -0.9
LIMCH1-209ENST00000509277 ARHGAP1Q07960 439 aa9.44□□□□□ -0.9
LIMCH1-209ENST00000509277 PPFIA1Q13136 1202 aa9.44□□□□□ -0.9
LIMCH1-209ENST00000509277 DGKDQ16760 1214 aa9.44□□□□□ -0.9
LIMCH1-209ENST00000509277 CEP85LQ5SZL2 805 aa9.44□□□□□ -0.9
LIMCH1-209ENST00000509277 ABRAQ8N0Z2 381 aa9.44□□□□□ -0.9
LIMCH1-209ENST00000509277 SYT2Q8N9I0 419 aaPredicted RBP9.44□□□□□ -0.9
LIMCH1-209ENST00000509277 NOA1Q8NC60 698 aaKnown RBP9.44□□□□□ -0.9
LIMCH1-209ENST00000509277 LRRC27Q9C0I9 530 aa9.44□□□□□ -0.9
LIMCH1-209ENST00000509277 PARVGQ9HBI0 331 aa9.44□□□□□ -0.9
LIMCH1-209ENST00000509277 CYP26B1Q9NR63 512 aa9.44□□□□□ -0.9
LIMCH1-209ENST00000509277 DONSONQ9NYP3 566 aa9.44□□□□□ -0.9
LIMCH1-209ENST00000509277 ANKFY1Q9P2R3 1169 aa9.44□□□□□ -0.9
LIMCH1-209ENST00000509277 HDAC6Q9UBN7 1215 aa9.44□□□□□ -0.9
LIMCH1-209ENST00000509277 DACH1Q9UI36 760 aa9.44□□□□□ -0.9
LIMCH1-209ENST00000509277 PCDHB13Q9Y5F0 798 aa9.44□□□□□ -0.9
LIMCH1-209ENST00000509277 ZSWIM8A7E2V4 1837 aa9.44□□□□□ -0.9
LIMCH1-209ENST00000509277 CCDC151A5D8V7 595 aa9.44□□□□□ -0.9
LIMCH1-209ENST00000509277 LRRIQ3A6PVS8 624 aaPredicted RBP9.44□□□□□ -0.9
LIMCH1-209ENST00000509277 CCDC175P0C221 793 aa9.44□□□□□ -0.9
LIMCH1-209ENST00000509277 FGFR4P22455 802 aa9.44□□□□□ -0.9
LIMCH1-209ENST00000509277 SLC12A3P55017 1021 aa9.44□□□□□ -0.9
LIMCH1-209ENST00000509277 PAK1Q13153 545 aa9.44□□□□□ -0.9
LIMCH1-209ENST00000509277 GIT2Q14161 759 aa9.44□□□□□ -0.9
LIMCH1-209ENST00000509277 MTFR1Q15390 333 aa9.44□□□□□ -0.9
LIMCH1-209ENST00000509277 ENOX2Q16206 610 aaKnown RBP9.44□□□□□ -0.9
LIMCH1-209ENST00000509277 FSCN1Q16658 493 aaKnown RBP9.44□□□□□ -0.9
LIMCH1-209ENST00000509277 DUSP28Q4G0W2 176 aa9.44□□□□□ -0.9
LIMCH1-209ENST00000509277 CCDC40Q4G0X9 1142 aa9.44□□□□□ -0.9
LIMCH1-209ENST00000509277 XKR3Q5GH77 459 aa9.44□□□□□ -0.9
LIMCH1-209ENST00000509277 KCNV1Q6PIU1 500 aa9.44□□□□□ -0.9
LIMCH1-209ENST00000509277 SH2D3CQ8N5H7 860 aa9.44□□□□□ -0.9
LIMCH1-209ENST00000509277 CSGALNACT2Q8N6G5 542 aa9.44□□□□□ -0.9
LIMCH1-209ENST00000509277 DEPTORQ8TB45 409 aa9.44□□□□□ -0.9
LIMCH1-209ENST00000509277 RABGGTAQ92696 567 aa9.44□□□□□ -0.9
LIMCH1-209ENST00000509277 IFT74Q96LB3 600 aa9.44□□□□□ -0.9
LIMCH1-209ENST00000509277 DEFB118Q96PH6 123 aa9.44□□□□□ -0.9
LIMCH1-209ENST00000509277 GSDMAQ96QA5 445 aa9.44□□□□□ -0.9
LIMCH1-209ENST00000509277 SMARCAD1Q9H4L7 1026 aa9.44□□□□□ -0.9
LIMCH1-209ENST00000509277 KMT5AQ9NQR1 393 aa9.44□□□□□ -0.9
LIMCH1-209ENST00000509277 MAGEC2Q9UBF1 373 aaPredicted RBP9.44□□□□□ -0.9
LIMCH1-209ENST00000509277 COL4A3BPQ9Y5P4 624 aa9.44□□□□□ -0.9
LIMCH1-209ENST00000509277 KLRC1P26715 233 aa9.43□□□□□ -0.9
LIMCH1-209ENST00000509277 GGCXP38435 758 aa9.43□□□□□ -0.9
LIMCH1-209ENST00000509277 MTIF2P46199 727 aaKnown RBP9.43□□□□□ -0.9
LIMCH1-209ENST00000509277 MDM2Q00987 491 aaPredicted RBP9.43□□□□□ -0.9
LIMCH1-209ENST00000509277 EMC2Q15006 297 aa9.43□□□□□ -0.9
LIMCH1-209ENST00000509277 PLCB4Q15147 1175 aa9.43□□□□□ -0.9
LIMCH1-209ENST00000509277 EFCAB12Q6NXP0 572 aa9.43□□□□□ -0.9
LIMCH1-209ENST00000509277 MYOCDQ8IZQ8 938 aa9.43□□□□□ -0.9
LIMCH1-209ENST00000509277 C7orf31Q8N865 590 aa9.43□□□□□ -0.9
LIMCH1-209ENST00000509277 SENP7Q9BQF6 1050 aa9.43□□□□□ -0.9
LIMCH1-209ENST00000509277 ERAP1Q9NZ08 941 aa9.43□□□□□ -0.9
LIMCH1-209ENST00000509277 LARSQ9P2J5 1176 aaKnown RBP9.43□□□□□ -0.9
LIMCH1-209ENST00000509277 MYH9P35579 1960 aaKnown RBP9.43□□□□□ -0.9
LIMCH1-209ENST00000509277 FANCGO15287 622 aa9.43□□□□□ -0.9
LIMCH1-209ENST00000509277 DKC1O60832 514 aaKnown RBP eCLIP9.43□□□□□ -0.9
LIMCH1-209ENST00000509277 DMP1Q13316 513 aaPredicted RBP9.43□□□□□ -0.9
LIMCH1-209ENST00000509277 ARHGEF6Q15052 776 aa9.43□□□□□ -0.9
LIMCH1-209ENST00000509277 SEZ6Q53EL9 994 aa9.43□□□□□ -0.9
LIMCH1-209ENST00000509277 DCAF17Q5H9S7 520 aaPredicted RBP9.43□□□□□ -0.9
LIMCH1-209ENST00000509277 CCDC62Q6P9F0 684 aa9.43□□□□□ -0.9
LIMCH1-209ENST00000509277 UNC13DQ70J99 1090 aa9.43□□□□□ -0.9
LIMCH1-209ENST00000509277 ZBTB33Q86T24 672 aa9.43□□□□□ -0.9
LIMCH1-209ENST00000509277 RNF149Q8NC42 400 aa9.43□□□□□ -0.9
LIMCH1-209ENST00000509277 TRPV1Q8NER1 839 aa9.43□□□□□ -0.9
LIMCH1-209ENST00000509277 NLRP7Q8WX94 980 aa9.43□□□□□ -0.9
LIMCH1-209ENST00000509277 PCYT2Q99447 389 aa9.43□□□□□ -0.9
LIMCH1-209ENST00000509277 CUEDC2Q9H467 287 aa9.43□□□□□ -0.9
LIMCH1-209ENST00000509277 ATP6V0A4Q9HBG4 840 aa9.43□□□□□ -0.9
LIMCH1-209ENST00000509277 TAB2Q9NYJ8 693 aa9.43□□□□□ -0.9
LIMCH1-209ENST00000509277 CBFA2T2O43439 604 aa9.43□□□□□ -0.9
LIMCH1-209ENST00000509277 ATP4AP20648 1035 aa9.43□□□□□ -0.9
LIMCH1-209ENST00000509277 CALRP27797 417 aaKnown RBP9.43□□□□□ -0.9
LIMCH1-209ENST00000509277 PMS1P54277 932 aaKnown RBP9.43□□□□□ -0.9
LIMCH1-209ENST00000509277 MYL5Q02045 173 aa9.43□□□□□ -0.9
LIMCH1-209ENST00000509277 PTPROQ16827 1216 aa9.43□□□□□ -0.9
LIMCH1-209ENST00000509277 ZNF658Q5TYW1 1059 aaPredicted RBP9.43□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms