RNA–Protein interactions for RNA: ENST00000450940.5

USP40-207, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 670 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-207ENST00000450940 MCPH1Q8NEM0 835 aa21.54■■□□□ 1.04
USP40-207ENST00000450940 POLR3FQ9H1D9 316 aaPredicted RBP21.54■■□□□ 1.04
USP40-207ENST00000450940 PCDHB6Q9Y5E3 794 aa21.54■■□□□ 1.04
USP40-207ENST00000450940 LAD1O00515 517 aa21.53■■□□□ 1.04
USP40-207ENST00000450940 MBTPS2O43462 519 aa21.53■■□□□ 1.04
USP40-207ENST00000450940 USO1O60763 962 aaKnown RBP21.53■■□□□ 1.04
USP40-207ENST00000450940 GLP2RO95838 553 aa21.53■■□□□ 1.04
USP40-207ENST00000450940 COASYQ13057 564 aa21.53■■□□□ 1.04
USP40-207ENST00000450940 PTGDRQ13258 359 aa21.53■■□□□ 1.04
USP40-207ENST00000450940 SMAD4Q13485 552 aaKnown RBP21.53■■□□□ 1.04
USP40-207ENST00000450940 KCNC3Q14003 757 aa21.53■■□□□ 1.04
USP40-207ENST00000450940 SMAD2Q15796 467 aaKnown RBP21.53■■□□□ 1.04
USP40-207ENST00000450940 LONRF3Q496Y0 759 aa21.53■■□□□ 1.04
USP40-207ENST00000450940 HAUS3Q68CZ6 603 aa21.53■■□□□ 1.04
USP40-207ENST00000450940 POTEGQ6S5H5 508 aa21.53■■□□□ 1.04
USP40-207ENST00000450940 RBM23Q86U06 439 aaKnown RBP21.53■■□□□ 1.04
USP40-207ENST00000450940 GJD3Q8N144 294 aa21.53■■□□□ 1.04
USP40-207ENST00000450940 SMG8Q8ND04 991 aaKnown RBP21.53■■□□□ 1.04
USP40-207ENST00000450940 NRDE2Q9H7Z3 1164 aa21.53■■□□□ 1.04
USP40-207ENST00000450940 CD207Q9UJ71 328 aa21.53■■□□□ 1.04
USP40-207ENST00000450940 INO80B-WBP1J3KQ70 363 aa21.52■■□□□ 1.04
USP40-207ENST00000450940 INPPL1O15357 1258 aa21.52■■□□□ 1.04
USP40-207ENST00000450940 CYP11B2P19099 503 aa21.52■■□□□ 1.04
USP40-207ENST00000450940 PRPHP41219 470 aa21.52■■□□□ 1.04
USP40-207ENST00000450940 NDUFV1P49821 464 aa21.52■■□□□ 1.04
USP40-207ENST00000450940 NCBP1Q09161 790 aaKnown RBP21.52■■□□□ 1.04
USP40-207ENST00000450940 NOTUMQ6P988 496 aa21.52■■□□□ 1.04
USP40-207ENST00000450940 TMEM184AQ6ZMB5 413 aa21.52■■□□□ 1.04
USP40-207ENST00000450940 TCF25Q9BQ70 676 aa21.52■■□□□ 1.04
USP40-207ENST00000450940 CSRNP2Q9H175 543 aa21.52■■□□□ 1.04
USP40-207ENST00000450940 UBN1Q9NPG3 1134 aa21.52■■□□□ 1.04
USP40-207ENST00000450940 GPRC5CQ9NQ84 441 aa21.52■■□□□ 1.04
USP40-207ENST00000450940 EIF4ENIF1Q9NRA8 985 aaKnown RBP21.52■■□□□ 1.04
USP40-207ENST00000450940 LRWD1Q9UFC0 647 aa21.52■■□□□ 1.04
USP40-207ENST00000450940 STK24Q9Y6E0 443 aa21.52■■□□□ 1.04
USP40-207ENST00000450940 C5orf42Q9H799 3197 aa21.52■■□□□ 1.03
USP40-207ENST00000450940 C19orf67A6NJJ6 358 aa21.51■■□□□ 1.03
USP40-207ENST00000450940 PER2O15055 1255 aa21.51■■□□□ 1.03
USP40-207ENST00000450940 GALTP07902 379 aa21.51■■□□□ 1.03
USP40-207ENST00000450940 ARF4P18085 180 aaPredicted RBP21.51■■□□□ 1.03
USP40-207ENST00000450940 ZP2Q05996 745 aa21.51■■□□□ 1.03
USP40-207ENST00000450940 ECM1Q16610 540 aa21.51■■□□□ 1.03
USP40-207ENST00000450940 CDCA2Q69YH5 1023 aaPredicted RBP21.51■■□□□ 1.03
USP40-207ENST00000450940 PADI6Q6TGC4 694 aa21.51■■□□□ 1.03
USP40-207ENST00000450940 KHSRPQ92945 711 aaKnown RBP eCLIP21.51■■□□□ 1.034e-7■□□□□ 10.3
USP40-207ENST00000450940 RSAD1Q9HA92 442 aa21.51■■□□□ 1.03
USP40-207ENST00000450940 KANSL3Q9P2N6 904 aa21.51■■□□□ 1.03
USP40-207ENST00000450940 NT5C1B-RDH14C9J2C7 533 aa21.5■■□□□ 1.03
USP40-207ENST00000450940 ZC3H11AO75152 810 aaKnown RBP eCLIP21.5■■□□□ 1.03
USP40-207ENST00000450940 GJB2P29033 226 aa21.5■■□□□ 1.03
USP40-207ENST00000450940 CCT6AP40227 531 aaKnown RBP21.5■■□□□ 1.03
USP40-207ENST00000450940 AFF1P51825 1210 aaKnown RBP21.5■■□□□ 1.03
USP40-207ENST00000450940 CLUL1Q15846 466 aa21.5■■□□□ 1.03
USP40-207ENST00000450940 RILPL1Q5EBL4 403 aa21.5■■□□□ 1.03
USP40-207ENST00000450940 PLPP4Q5VZY2 271 aa21.5■■□□□ 1.03
USP40-207ENST00000450940 TMC7Q7Z402 723 aa21.5■■□□□ 1.03
USP40-207ENST00000450940 ZNF280BQ86YH2 543 aa21.5■■□□□ 1.03
USP40-207ENST00000450940 ADHFE1Q8IWW8 467 aa21.5■■□□□ 1.03
USP40-207ENST00000450940 MRPL43Q8N983 215 aaKnown RBP21.5■■□□□ 1.03
USP40-207ENST00000450940 SMRP1Q8NCR6 262 aa21.5■■□□□ 1.03
USP40-207ENST00000450940 VN1R2Q8NFZ6 395 aa21.5■■□□□ 1.03
USP40-207ENST00000450940 URGCPQ8TCY9 931 aa21.5■■□□□ 1.03
USP40-207ENST00000450940 TMEM169Q96HH4 297 aa21.5■■□□□ 1.03
USP40-207ENST00000450940 IGSF21Q96ID5 467 aa21.5■■□□□ 1.03
USP40-207ENST00000450940 EIF2AQ9BY44 585 aaKnown RBP21.5■■□□□ 1.03
USP40-207ENST00000450940 RAB34Q9BZG1 259 aa21.5■■□□□ 1.03
USP40-207ENST00000450940 ENTPD7Q9NQZ7 604 aa21.5■■□□□ 1.03
USP40-207ENST00000450940 INPP5FQ9Y2H2 1132 aa21.5■■□□□ 1.03
USP40-207ENST00000450940 IPPQ9Y573 584 aa21.5■■□□□ 1.03
USP40-207ENST00000450940 A0A1B0GUA9 196 aa21.49■■□□□ 1.03
USP40-207ENST00000450940 ARHGEF35A5YM69 484 aa21.49■■□□□ 1.03
USP40-207ENST00000450940 HIDE1A8MVS5 230 aa21.49■■□□□ 1.03
USP40-207ENST00000450940 B4GALT3O60512 393 aa21.49■■□□□ 1.03
USP40-207ENST00000450940 DDHD2O94830 711 aa21.49■■□□□ 1.03
USP40-207ENST00000450940 ITGA4P13612 1032 aa21.49■■□□□ 1.03
USP40-207ENST00000450940 RNASELQ05823 741 aaKnown RBP21.49■■□□□ 1.03
USP40-207ENST00000450940 IL17AQ16552 155 aa21.49■■□□□ 1.03
USP40-207ENST00000450940 FAM187BQ17R55 369 aa21.49■■□□□ 1.03
USP40-207ENST00000450940 DDX53Q86TM3 631 aaKnown RBP21.49■■□□□ 1.03
USP40-207ENST00000450940 TMEM173Q86WV6 379 aaPredicted RBP21.49■■□□□ 1.03
USP40-207ENST00000450940 CPB2Q96IY4 423 aa21.49■■□□□ 1.03
USP40-207ENST00000450940 PRIMPOLQ96LW4 560 aa21.49■■□□□ 1.03
USP40-207ENST00000450940 C1QTNF1Q9BXJ1 281 aa21.49■■□□□ 1.03
USP40-207ENST00000450940 FZD8Q9H461 694 aa21.49■■□□□ 1.03
USP40-207ENST00000450940 DNAJB4Q9UDY4 337 aa21.49■■□□□ 1.03
USP40-207ENST00000450940 BARX2Q9UMQ3 279 aaPredicted RBP21.49■■□□□ 1.03
USP40-207ENST00000450940 TDRD15B5MCY1 1934 aaKnown RBP21.49■■□□□ 1.03
USP40-207ENST00000450940 C2orf71A6NGG8 1288 aa21.48■■□□□ 1.03
USP40-207ENST00000450940 PI4K2BG5E9Z4 385 aa21.48■■□□□ 1.03
USP40-207ENST00000450940 SLC11A1P49279 550 aa21.48■■□□□ 1.03
USP40-207ENST00000450940 SMC1AQ14683 1233 aaKnown RBP21.48■■□□□ 1.03
USP40-207ENST00000450940 MCTP1Q6DN14 999 aa21.48■■□□□ 1.03
USP40-207ENST00000450940 MAEAQ7L5Y9 396 aa21.48■■□□□ 1.03
USP40-207ENST00000450940 BCL7CQ8WUZ0 217 aaPredicted RBP21.48■■□□□ 1.03
USP40-207ENST00000450940 BSNDQ8WZ55 320 aa21.48■■□□□ 1.03
USP40-207ENST00000450940 TMEM175Q9BSA9 504 aa21.48■■□□□ 1.03
USP40-207ENST00000450940 RNF39Q9H2S5 420 aa21.48■■□□□ 1.03
USP40-207ENST00000450940 EPHX3Q9H6B9 360 aa21.48■■□□□ 1.03
USP40-207ENST00000450940 PRMT7Q9NVM4 692 aaPredicted RBP21.48■■□□□ 1.03
USP40-207ENST00000450940 KIAA1024Q9UPX6 916 aa21.48■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 60.2 ms