RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 SOX10P56693 466 aa19.84■□□□□ 0.77
CCDC88C-203ENST00000389856 ENPEPQ07075 957 aa19.84■□□□□ 0.77
CCDC88C-203ENST00000389856 GJC2Q5T442 439 aaPredicted RBP19.84■□□□□ 0.77
CCDC88C-203ENST00000389856 ASAP3Q8TDY4 903 aa19.84■□□□□ 0.77
CCDC88C-203ENST00000389856 DNAJC7Q99615 494 aa19.84■□□□□ 0.77
CCDC88C-203ENST00000389856 TUT1Q9H6E5 874 aaKnown RBP19.84■□□□□ 0.77
CCDC88C-203ENST00000389856 SUGCTQ9HAC7 445 aa19.84■□□□□ 0.77
CCDC88C-203ENST00000389856 SIK3Q9Y2K2 1263 aa19.84■□□□□ 0.77
CCDC88C-203ENST00000389856 DOCK3Q8IZD9 2030 aa19.83■□□□□ 0.77
CCDC88C-203ENST00000389856 SIP14410 1827 aa19.83■□□□□ 0.77
CCDC88C-203ENST00000389856 TTC26A0AVF1 554 aa19.83■□□□□ 0.76
CCDC88C-203ENST00000389856 A6NJR5 290 aa19.83■□□□□ 0.76
CCDC88C-203ENST00000389856 CASP4P49662 377 aa19.83■□□□□ 0.76
CCDC88C-203ENST00000389856 TMEM63BQ5T3F8 832 aa19.83■□□□□ 0.76
CCDC88C-203ENST00000389856 TLK2Q86UE8 772 aa19.83■□□□□ 0.76
CCDC88C-203ENST00000389856 PRPF31Q8WWY3 499 aaKnown RBP19.83■□□□□ 0.76
CCDC88C-203ENST00000389856 ZIC5Q96T25 663 aa19.83■□□□□ 0.76
CCDC88C-203ENST00000389856 KIFC3Q9BVG8 833 aa19.83■□□□□ 0.76
CCDC88C-203ENST00000389856 CFHR5Q9BXR6 569 aa19.83■□□□□ 0.76
CCDC88C-203ENST00000389856 SUCLA2Q9P2R7 463 aaPredicted RBP19.83■□□□□ 0.76
CCDC88C-203ENST00000389856 GNEQ9Y223 722 aaKnown RBP19.83■□□□□ 0.76
CCDC88C-203ENST00000389856 DAAM1Q9Y4D1 1078 aa19.83■□□□□ 0.76
CCDC88C-203ENST00000389856 RRN3P2A6NIE6 340 aa19.82■□□□□ 0.76
CCDC88C-203ENST00000389856 ZBTB42B2RXF5 422 aa19.82■□□□□ 0.76
CCDC88C-203ENST00000389856 DYNC1LI2O43237 492 aaPredicted RBP19.82■□□□□ 0.76
CCDC88C-203ENST00000389856 ECM2O94769 699 aaPredicted RBP19.82■□□□□ 0.76
CCDC88C-203ENST00000389856 PIGRP01833 764 aa19.82■□□□□ 0.76
CCDC88C-203ENST00000389856 AKR1A1P14550 325 aa19.82■□□□□ 0.76
CCDC88C-203ENST00000389856 HOXD10P28358 340 aa19.82■□□□□ 0.76
CCDC88C-203ENST00000389856 CYP2C19P33261 490 aa19.82■□□□□ 0.76
CCDC88C-203ENST00000389856 BFSP1Q12934 665 aa19.82■□□□□ 0.76
CCDC88C-203ENST00000389856 GBP6Q6ZN66 633 aa19.82■□□□□ 0.76
CCDC88C-203ENST00000389856 CACNA2D4Q7Z3S7 1137 aa19.82■□□□□ 0.76
CCDC88C-203ENST00000389856 POMGNT1Q8WZA1 660 aa19.82■□□□□ 0.76
CCDC88C-203ENST00000389856 UBXN4Q92575 508 aa19.82■□□□□ 0.76
CCDC88C-203ENST00000389856 SLC35C1Q96A29 364 aa19.82■□□□□ 0.76
CCDC88C-203ENST00000389856 BORCS6Q96GS4 357 aa19.82■□□□□ 0.76
CCDC88C-203ENST00000389856 C16orf70Q9BSU1 422 aa19.82■□□□□ 0.76
CCDC88C-203ENST00000389856 OGFRQ9NZT2 677 aa19.82■□□□□ 0.76
CCDC88C-203ENST00000389856 FLRT1Q9NZU1 646 aa19.82■□□□□ 0.76
CCDC88C-203ENST00000389856 CASP8AP2Q9UKL3 1982 aa19.82■□□□□ 0.76
CCDC88C-203ENST00000389856 ZNF286BP0CG31 522 aa19.81■□□□□ 0.76
CCDC88C-203ENST00000389856 INSRRP14616 1297 aa19.81■□□□□ 0.76
CCDC88C-203ENST00000389856 MAP2K2P36507 400 aa19.81■□□□□ 0.76
CCDC88C-203ENST00000389856 SP3Q02447 781 aa19.81■□□□□ 0.76
CCDC88C-203ENST00000389856 LAMTOR4Q0VGL1 99 aa19.81■□□□□ 0.76
CCDC88C-203ENST00000389856 CAPSQ13938 189 aa19.81■□□□□ 0.76
CCDC88C-203ENST00000389856 EFCAB12Q6NXP0 572 aa19.81■□□□□ 0.76
CCDC88C-203ENST00000389856 ZNF662Q6ZS27 426 aa19.81■□□□□ 0.76
CCDC88C-203ENST00000389856 KATNAL1Q9BW62 490 aa19.81■□□□□ 0.76
CCDC88C-203ENST00000389856 TTYH3Q9C0H2 523 aa19.81■□□□□ 0.76
CCDC88C-203ENST00000389856 RNPEPQ9H4A4 650 aa19.81■□□□□ 0.76
CCDC88C-203ENST00000389856 ARGLU1Q9NWB6 273 aaPredicted RBP19.81■□□□□ 0.76
CCDC88C-203ENST00000389856 CEP72Q9P209 647 aa19.81■□□□□ 0.76
CCDC88C-203ENST00000389856 ADGRA3Q8IWK6 1321 aa19.81■□□□□ 0.76
CCDC88C-203ENST00000389856 P4HA2O15460 535 aa19.8■□□□□ 0.76
CCDC88C-203ENST00000389856 KPNA6O60684 536 aa19.8■□□□□ 0.76
CCDC88C-203ENST00000389856 AOC2O75106 756 aa19.8■□□□□ 0.76
CCDC88C-203ENST00000389856 TADA3O75528 432 aa19.8■□□□□ 0.76
CCDC88C-203ENST00000389856 C22orf31O95567 290 aa19.8■□□□□ 0.76
CCDC88C-203ENST00000389856 LDHAP00338 332 aaKnown RBP19.8■□□□□ 0.76
CCDC88C-203ENST00000389856 POU5F1BQ06416 359 aa19.8■□□□□ 0.76
CCDC88C-203ENST00000389856 PPFIA1Q13136 1202 aa19.8■□□□□ 0.76
CCDC88C-203ENST00000389856 ELF2Q15723 593 aa19.8■□□□□ 0.76
CCDC88C-203ENST00000389856 CCL14Q16627 93 aa19.8■□□□□ 0.76
CCDC88C-203ENST00000389856 EXOC3L4Q17RC7 722 aa19.8■□□□□ 0.76
CCDC88C-203ENST00000389856 ZPBP2Q6X784 338 aa19.8■□□□□ 0.76
CCDC88C-203ENST00000389856 METTL13Q8N6R0 699 aa19.8■□□□□ 0.76
CCDC88C-203ENST00000389856 CBWD1Q9BRT8 395 aa19.8■□□□□ 0.76
CCDC88C-203ENST00000389856 DESI2Q9BSY9 194 aa19.8■□□□□ 0.76
CCDC88C-203ENST00000389856 MRPL4Q9BYD3 311 aaKnown RBP19.8■□□□□ 0.76
CCDC88C-203ENST00000389856 PCIF1Q9H4Z3 704 aa19.8■□□□□ 0.76
CCDC88C-203ENST00000389856 PLCB1Q9NQ66 1216 aa19.8■□□□□ 0.76
CCDC88C-203ENST00000389856 FAM207AQ9NSI2 230 aaPredicted RBP19.8■□□□□ 0.76
CCDC88C-203ENST00000389856 MRFAP1Q9Y605 127 aa19.8■□□□□ 0.76
CCDC88C-203ENST00000389856 IGHA2P01877 340 aa19.8■□□□□ 0.76
CCDC88C-203ENST00000389856 CDK17Q00537 523 aa19.8■□□□□ 0.76
CCDC88C-203ENST00000389856 CDC42EP1Q00587 391 aa19.8■□□□□ 0.76
CCDC88C-203ENST00000389856 MTF1Q14872 753 aa19.8■□□□□ 0.76
CCDC88C-203ENST00000389856 ARHGEF6Q15052 776 aa19.8■□□□□ 0.76
CCDC88C-203ENST00000389856 MAPK6Q16659 721 aa19.8■□□□□ 0.76
CCDC88C-203ENST00000389856 ARHGAP29Q52LW3 1261 aa19.8■□□□□ 0.76
CCDC88C-203ENST00000389856 PRAMEF19Q5SWL8 479 aa19.8■□□□□ 0.76
CCDC88C-203ENST00000389856 CDCA2Q69YH5 1023 aaPredicted RBP19.8■□□□□ 0.76
CCDC88C-203ENST00000389856 FMNL3Q8IVF7 1028 aa19.8■□□□□ 0.76
CCDC88C-203ENST00000389856 GPD1LQ8N335 351 aa19.8■□□□□ 0.76
CCDC88C-203ENST00000389856 WDR24Q96S15 920 aa19.8■□□□□ 0.76
CCDC88C-203ENST00000389856 LSM14BQ9BX40 385 aaKnown RBP19.8■□□□□ 0.76
CCDC88C-203ENST00000389856 SPC25Q9HBM1 224 aa19.8■□□□□ 0.76
CCDC88C-203ENST00000389856 H2AFXP16104 143 aaPredicted RBP19.79■□□□□ 0.76
CCDC88C-203ENST00000389856 PHKA2P46019 1235 aa19.79■□□□□ 0.76
CCDC88C-203ENST00000389856 VAMP7P51809 220 aa19.79■□□□□ 0.76
CCDC88C-203ENST00000389856 SNRNP35Q16560 246 aaKnown RBP19.79■□□□□ 0.76
CCDC88C-203ENST00000389856 MEA1Q16626 185 aa19.79■□□□□ 0.76
CCDC88C-203ENST00000389856 RHPN2Q8IUC4 686 aa19.79■□□□□ 0.76
CCDC88C-203ENST00000389856 NFKBIZQ9BYH8 718 aa19.79■□□□□ 0.76
CCDC88C-203ENST00000389856 IKZF4Q9H2S9 585 aa19.79■□□□□ 0.76
CCDC88C-203ENST00000389856 STYXL1Q9Y6J8 313 aa19.79■□□□□ 0.76
CCDC88C-203ENST00000389856 KLRC1P26715 233 aa19.78■□□□□ 0.76
CCDC88C-203ENST00000389856 FMO5P49326 533 aa19.78■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 102.9 ms