RNA–Protein interactions for RNA: ENST00000581021.5

SS18-218, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 588 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-218ENST00000581021 RALGAPA2Q2PPJ7 1873 aa22.32■■□□□ 1.16
SS18-218ENST00000581021 SPTBN5Q9NRC6 3674 aaKnown RBP22.32■■□□□ 1.16
SS18-218ENST00000581021 B4GALT5O43286 388 aa22.31■■□□□ 1.16
SS18-218ENST00000581021 HSP90AA1P07900 732 aaKnown RBP22.31■■□□□ 1.16
SS18-218ENST00000581021 POU3F3P20264 500 aaPredicted RBP22.31■■□□□ 1.16
SS18-218ENST00000581021 POU5F1BQ06416 359 aa22.31■■□□□ 1.16
SS18-218ENST00000581021 MAPK7Q13164 816 aa22.31■■□□□ 1.16
SS18-218ENST00000581021 TFDP1Q14186 410 aa22.31■■□□□ 1.16
SS18-218ENST00000581021 CDCA2Q69YH5 1023 aaPredicted RBP22.31■■□□□ 1.16
SS18-218ENST00000581021 TWF2Q6IBS0 349 aaKnown RBP22.31■■□□□ 1.16
SS18-218ENST00000581021 CABP7Q86V35 215 aa22.31■■□□□ 1.16
SS18-218ENST00000581021 RNF169Q8NCN4 708 aa22.31■■□□□ 1.16
SS18-218ENST00000581021 AK8Q96MA6 479 aa22.31■■□□□ 1.16
SS18-218ENST00000581021 KIFC3Q9BVG8 833 aa22.31■■□□□ 1.16
SS18-218ENST00000581021 NFKBIZQ9BYH8 718 aa22.31■■□□□ 1.16
SS18-218ENST00000581021 ZSCAN16Q9H4T2 348 aaPredicted RBP22.31■■□□□ 1.16
SS18-218ENST00000581021 DNM3Q9UQ16 869 aa22.31■■□□□ 1.16
SS18-218ENST00000581021 MYH15Q9Y2K3 1946 aa22.31■■□□□ 1.16
SS18-218ENST00000581021 LRRIQ4A6NIV6 560 aa22.3■■□□□ 1.16
SS18-218ENST00000581021 TBKBP1A7MCY6 615 aa22.3■■□□□ 1.16
SS18-218ENST00000581021 INO80B-WBP1J3KQ70 363 aa22.3■■□□□ 1.16
SS18-218ENST00000581021 EDN1P05305 212 aa22.3■■□□□ 1.16
SS18-218ENST00000581021 CTNNB1P35222 781 aa22.3■■□□□ 1.16
SS18-218ENST00000581021 LONRF3Q496Y0 759 aa22.3■■□□□ 1.16
SS18-218ENST00000581021 SPECC1Q5M775 1068 aa22.3■■□□□ 1.16
SS18-218ENST00000581021 RINT1Q6NUQ1 792 aa22.3■■□□□ 1.16
SS18-218ENST00000581021 C1orf186Q6ZWK4 172 aa22.3■■□□□ 1.16
SS18-218ENST00000581021 LPPQ93052 612 aa22.3■■□□□ 1.16
SS18-218ENST00000581021 CPB2Q96IY4 423 aa22.3■■□□□ 1.16
SS18-218ENST00000581021 CLIC6Q96NY7 704 aa22.3■■□□□ 1.16
SS18-218ENST00000581021 CASD1Q96PB1 797 aa22.3■■□□□ 1.16
SS18-218ENST00000581021 CSRNP2Q9H175 543 aa22.3■■□□□ 1.16
SS18-218ENST00000581021 FAM105AQ9NUU6 356 aa22.3■■□□□ 1.16
SS18-218ENST00000581021 DACT1Q9NYF0 836 aa22.3■■□□□ 1.16
SS18-218ENST00000581021 TTLL13PA6NNM8 815 aa22.29■■□□□ 1.16
SS18-218ENST00000581021 C5orf67F2Z3F1 127 aa22.29■■□□□ 1.16
SS18-218ENST00000581021 LONP1P36776 959 aaKnown RBP22.29■■□□□ 1.16
SS18-218ENST00000581021 BMPR1AP36894 532 aa22.29■■□□□ 1.16
SS18-218ENST00000581021 SLC12A3P55017 1021 aa22.29■■□□□ 1.16
SS18-218ENST00000581021 KARSQ15046 597 aaKnown RBP22.29■■□□□ 1.16
SS18-218ENST00000581021 CCDC85BQ15834 202 aaPredicted RBP22.29■■□□□ 1.16
SS18-218ENST00000581021 LRRC55Q6ZSA7 311 aa22.29■■□□□ 1.16
SS18-218ENST00000581021 EPSTI1Q96J88 318 aa22.29■■□□□ 1.16
SS18-218ENST00000581021 SAMD11Q96NU1 681 aa22.29■■□□□ 1.16
SS18-218ENST00000581021 PRDM6Q9NQX0 595 aa22.29■■□□□ 1.16
SS18-218ENST00000581021 H3BNC9 293 aa22.28■■□□□ 1.16
SS18-218ENST00000581021 ZSCAN22P10073 491 aaPredicted RBP22.28■■□□□ 1.16
SS18-218ENST00000581021 NASPP49321 788 aaPredicted RBP22.28■■□□□ 1.16
SS18-218ENST00000581021 MICALL1Q8N3F8 863 aa22.28■■□□□ 1.16
SS18-218ENST00000581021 PPM1EQ8WY54 764 aa22.28■■□□□ 1.16
SS18-218ENST00000581021 TMEM117Q9H0C3 514 aa22.28■■□□□ 1.16
SS18-218ENST00000581021 CCDC113Q9H0I3 377 aa22.28■■□□□ 1.16
SS18-218ENST00000581021 BLOC1S4Q9NUP1 217 aa22.28■■□□□ 1.16
SS18-218ENST00000581021 USP20Q9Y2K6 914 aa22.28■■□□□ 1.16
SS18-218ENST00000581021 PCDHB2Q9Y5E7 798 aa22.28■■□□□ 1.16
SS18-218ENST00000581021 SRPRBQ9Y5M8 271 aaKnown RBP22.28■■□□□ 1.16
SS18-218ENST00000581021 XIRP2A4UGR9 3374 aa22.27■■□□□ 1.16
SS18-218ENST00000581021 HIP1RO75146 1068 aa22.27■■□□□ 1.16
SS18-218ENST00000581021 ERLIN2O94905 339 aa22.27■■□□□ 1.16
SS18-218ENST00000581021 F13A1P00488 732 aa22.27■■□□□ 1.16
SS18-218ENST00000581021 PLA2G4BP0C869 781 aa22.27■■□□□ 1.16
SS18-218ENST00000581021 ARF4P18085 180 aaPredicted RBP22.27■■□□□ 1.16
SS18-218ENST00000581021 PLCG1P19174 1290 aa22.27■■□□□ 1.16
SS18-218ENST00000581021 UBA7P41226 1012 aa22.27■■□□□ 1.16
SS18-218ENST00000581021 SLC39A14Q15043 492 aa22.27■■□□□ 1.16
SS18-218ENST00000581021 CDR2LQ86X02 465 aaPredicted RBP22.27■■□□□ 1.16
SS18-218ENST00000581021 SYT2Q8N9I0 419 aaPredicted RBP22.27■■□□□ 1.16
SS18-218ENST00000581021 HELQQ8TDG4 1101 aa22.27■■□□□ 1.16
SS18-218ENST00000581021 EIF2AQ9BY44 585 aaKnown RBP22.27■■□□□ 1.16
SS18-218ENST00000581021 NT5C3AQ9H0P0 336 aa22.27■■□□□ 1.16
SS18-218ENST00000581021 CWH43Q9H720 699 aa22.27■■□□□ 1.16
SS18-218ENST00000581021 TYW1Q9NV66 732 aaKnown RBP22.27■■□□□ 1.16
SS18-218ENST00000581021 MORC2Q9Y6X9 1032 aaPredicted RBP22.27■■□□□ 1.16
SS18-218ENST00000581021 ATG2AQ2TAZ0 1938 aa22.27■■□□□ 1.16
SS18-218ENST00000581021 NPHP3-ACAD11A0A0J9YXS1 232 aa22.26■■□□□ 1.15
SS18-218ENST00000581021 GRM6O15303 877 aa22.26■■□□□ 1.15
SS18-218ENST00000581021 ZNF623O75123 536 aa22.26■■□□□ 1.15
SS18-218ENST00000581021 EOMESO95936 686 aa22.26■■□□□ 1.15
SS18-218ENST00000581021 NAMPTP43490 491 aa22.26■■□□□ 1.15
SS18-218ENST00000581021 RAD51AP2Q09MP3 1159 aa22.26■■□□□ 1.15
SS18-218ENST00000581021 GPM6BQ13491 265 aa22.26■■□□□ 1.15
SS18-218ENST00000581021 FOXD4L6Q3SYB3 417 aaPredicted RBP22.26■■□□□ 1.15
SS18-218ENST00000581021 ARSHQ5FYA8 562 aa22.26■■□□□ 1.15
SS18-218ENST00000581021 FOXD4L3Q6VB84 417 aaPredicted RBP22.26■■□□□ 1.15
SS18-218ENST00000581021 SMG8Q8ND04 991 aaKnown RBP22.26■■□□□ 1.15
SS18-218ENST00000581021 SYMPKQ92797 1274 aaKnown RBP22.26■■□□□ 1.15
SS18-218ENST00000581021 KIFAP3Q92845 792 aa22.26■■□□□ 1.15
SS18-218ENST00000581021 CDK5RAP3Q96JB5 506 aa22.26■■□□□ 1.15
SS18-218ENST00000581021 FZD8Q9H461 694 aa22.26■■□□□ 1.15
SS18-218ENST00000581021 TFIP11Q9UBB9 837 aaKnown RBP22.26■■□□□ 1.15
SS18-218ENST00000581021 SLC26A4O43511 780 aa22.25■■□□□ 1.15
SS18-218ENST00000581021 SSBP05455 408 aaKnown RBP eCLIP22.25■■□□□ 1.15
SS18-218ENST00000581021 GUCY2CP25092 1073 aa22.25■■□□□ 1.15
SS18-218ENST00000581021 PCBP1Q15365 356 aaKnown RBP eCLIP22.25■■□□□ 1.15
SS18-218ENST00000581021 PPP4R3CPQ6ZMV5 832 aa22.25■■□□□ 1.15
SS18-218ENST00000581021 AGMOQ6ZNB7 445 aa22.25■■□□□ 1.15
SS18-218ENST00000581021 LINC00301Q8NCQ3 95 aa22.25■■□□□ 1.15
SS18-218ENST00000581021 CCSER1Q9C0I3 900 aa22.25■■□□□ 1.15
SS18-218ENST00000581021 RNF216Q9NWF9 866 aaPredicted RBP22.25■■□□□ 1.15
SS18-218ENST00000581021 ZDHHC9Q9Y397 364 aa22.25■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms