RNA–Protein interactions for RNA: ENST00000566078.1

CTCF-203, Transcript of CCCTC-binding factor, humanhuman

TSL 2

Gene CTCF, Length 1,627 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-203ENST00000566078 MRFAP1L1Q96HT8 127 aa33.57■■■□□ 2.96
CTCF-203ENST00000566078 PDLIM2Q96JY6 352 aa33.57■■■□□ 2.96
CTCF-203ENST00000566078 AGPAT3Q9NRZ7 376 aa33.57■■■□□ 2.96
CTCF-203ENST00000566078 GJB1P08034 283 aa33.56■■■□□ 2.96
CTCF-203ENST00000566078 SCP2P22307 547 aa33.56■■■□□ 2.96
CTCF-203ENST00000566078 NFRKBQ6P4R8 1299 aa33.56■■■□□ 2.96
CTCF-203ENST00000566078 APTXQ7Z2E3 356 aaKnown RBP33.56■■■□□ 2.96
CTCF-203ENST00000566078 GOLGA5Q8TBA6 731 aa33.56■■■□□ 2.96
CTCF-203ENST00000566078 CETN3O15182 167 aa33.55■■■□□ 2.96
CTCF-203ENST00000566078 SRGAP2CP0DJJ0 459 aa33.55■■■□□ 2.96
CTCF-203ENST00000566078 TFDP1Q14186 410 aa33.55■■■□□ 2.96
CTCF-203ENST00000566078 KCNA10Q16322 511 aa33.55■■■□□ 2.96
CTCF-203ENST00000566078 TAS1R3Q7RTX0 852 aa33.55■■■□□ 2.96
CTCF-203ENST00000566078 C7orf31Q8N865 590 aa33.55■■■□□ 2.96
CTCF-203ENST00000566078 NAP1L5Q96NT1 182 aaPredicted RBP33.55■■■□□ 2.96
CTCF-203ENST00000566078 CTAGE1Q96RT6 745 aa33.55■■■□□ 2.96
CTCF-203ENST00000566078 AKT3Q9Y243 479 aa33.55■■■□□ 2.96
CTCF-203ENST00000566078 PHLPP2Q6ZVD8 1323 aa33.55■■■□□ 2.96
CTCF-203ENST00000566078 ASGR1P07306 291 aa33.54■■■□□ 2.96
CTCF-203ENST00000566078 RPL13P26373 211 aaKnown RBP33.54■■■□□ 2.96
CTCF-203ENST00000566078 NFIL3Q16649 462 aa33.54■■■□□ 2.96
CTCF-203ENST00000566078 RNF180Q86T96 592 aa33.54■■■□□ 2.96
CTCF-203ENST00000566078 RNF149Q8NC42 400 aa33.54■■■□□ 2.96
CTCF-203ENST00000566078 KCNN1Q92952 543 aa33.54■■■□□ 2.96
CTCF-203ENST00000566078 NLRP4Q96MN2 994 aa33.54■■■□□ 2.96
CTCF-203ENST00000566078 PPP1R9BQ96SB3 815 aa33.54■■■□□ 2.96
CTCF-203ENST00000566078 TAB2Q9NYJ8 693 aa33.54■■■□□ 2.96
CTCF-203ENST00000566078 HDAC6Q9UBN7 1215 aa33.54■■■□□ 2.96
CTCF-203ENST00000566078 ASAP2O43150 1006 aa33.53■■■□□ 2.96
CTCF-203ENST00000566078 STRN3Q13033 797 aa33.53■■■□□ 2.96
CTCF-203ENST00000566078 CDCA2Q69YH5 1023 aaPredicted RBP33.53■■■□□ 2.96
CTCF-203ENST00000566078 CCSAPQ6IQ19 270 aaPredicted RBP33.53■■■□□ 2.96
CTCF-203ENST00000566078 FILIP1Q7Z7B0 1213 aa33.53■■■□□ 2.96
CTCF-203ENST00000566078 PCSK9Q8NBP7 692 aaKnown RBP33.53■■■□□ 2.96
CTCF-203ENST00000566078 MAP7D2Q96T17 732 aa33.53■■■□□ 2.96
CTCF-203ENST00000566078 C17orf102A2RUQ5 167 aa33.53■■■□□ 2.96
CTCF-203ENST00000566078 MTIF2P46199 727 aaKnown RBP33.53■■■□□ 2.96
CTCF-203ENST00000566078 HIC1Q14526 733 aa33.53■■■□□ 2.96
CTCF-203ENST00000566078 ZBTB8OSQ8IWT0 167 aa33.53■■■□□ 2.96
CTCF-203ENST00000566078 A0A1B0GTH6 734 aa33.52■■■□□ 2.96
CTCF-203ENST00000566078 MBLAC1A4D2B0 266 aaPredicted RBP33.52■■■□□ 2.96
CTCF-203ENST00000566078 TISP43B9A030 160 aa33.52■■■□□ 2.96
CTCF-203ENST00000566078 COPB1P53618 953 aaKnown RBP33.52■■■□□ 2.96
CTCF-203ENST00000566078 CCDC40Q4G0X9 1142 aa33.52■■■□□ 2.96
CTCF-203ENST00000566078 ZNF668Q96K58 619 aaPredicted RBP33.52■■■□□ 2.96
CTCF-203ENST00000566078 XRN2Q9H0D6 950 aaKnown RBP eCLIP33.52■■■□□ 2.96
CTCF-203ENST00000566078 C2orf40Q9H1Z8 148 aa33.52■■■□□ 2.96
CTCF-203ENST00000566078 TMEM134Q9H6X4 195 aa33.52■■■□□ 2.96
CTCF-203ENST00000566078 CGNQ9P2M7 1197 aaKnown RBP33.52■■■□□ 2.96
CTCF-203ENST00000566078 K7ERI5 159 aa33.51■■■□□ 2.96
CTCF-203ENST00000566078 VTNP04004 478 aa33.51■■■□□ 2.96
CTCF-203ENST00000566078 CDC25BP30305 580 aa33.51■■■□□ 2.96
CTCF-203ENST00000566078 LHX8Q68G74 356 aa33.51■■■□□ 2.96
CTCF-203ENST00000566078 ARHGAP30Q7Z6I6 1101 aaPredicted RBP33.51■■■□□ 2.96
CTCF-203ENST00000566078 BICD1Q96G01 975 aa33.51■■■□□ 2.96
CTCF-203ENST00000566078 VPS16Q9H269 839 aa33.51■■■□□ 2.96
CTCF-203ENST00000566078 GNA14O95837 355 aa33.5■■■□□ 2.95
CTCF-203ENST00000566078 TPM3P06753 285 aa33.5■■■□□ 2.95
CTCF-203ENST00000566078 CYP2C9P11712 490 aa33.5■■■□□ 2.95
CTCF-203ENST00000566078 CYP2J2P51589 502 aa33.5■■■□□ 2.95
CTCF-203ENST00000566078 EFNA5P52803 228 aa33.5■■■□□ 2.95
CTCF-203ENST00000566078 SNRPFP62306 86 aaKnown RBP33.5■■■□□ 2.95
CTCF-203ENST00000566078 ADAM17P78536 824 aa33.5■■■□□ 2.95
CTCF-203ENST00000566078 NBPF20Q3BBV1 942 aa33.5■■■□□ 2.95
CTCF-203ENST00000566078 SLC9C1Q4G0N8 1177 aa33.5■■■□□ 2.95
CTCF-203ENST00000566078 FILIP1LQ4L180 1135 aa33.5■■■□□ 2.95
CTCF-203ENST00000566078 TUBGCP2Q9BSJ2 902 aa33.5■■■□□ 2.95
CTCF-203ENST00000566078 INTS13Q9NVM9 706 aa33.5■■■□□ 2.95
CTCF-203ENST00000566078 HNRNPDLO14979 420 aaKnown RBP33.5■■■□□ 2.95
CTCF-203ENST00000566078 GNAT1P11488 350 aa33.5■■■□□ 2.95
CTCF-203ENST00000566078 PRKCSHP14314 528 aaPredicted RBP33.5■■■□□ 2.95
CTCF-203ENST00000566078 HOXC8P31273 242 aa33.5■■■□□ 2.95
CTCF-203ENST00000566078 CEP135Q66GS9 1140 aa33.5■■■□□ 2.95
CTCF-203ENST00000566078 KIAA0319LQ8IZA0 1049 aa33.5■■■□□ 2.95
CTCF-203ENST00000566078 PPP1R16BQ96T49 567 aa33.5■■■□□ 2.95
CTCF-203ENST00000566078 LRRC10BA6NIK2 292 aa33.49■■■□□ 2.95
CTCF-203ENST00000566078 TREHO43280 583 aa33.49■■■□□ 2.95
CTCF-203ENST00000566078 RUFY4Q6ZNE9 571 aa33.49■■■□□ 2.95
CTCF-203ENST00000566078 C12orf56Q8IXR9 622 aa33.49■■■□□ 2.95
CTCF-203ENST00000566078 DRC7Q8IY82 874 aa33.49■■■□□ 2.95
CTCF-203ENST00000566078 CCDC113Q9H0I3 377 aa33.49■■■□□ 2.95
CTCF-203ENST00000566078 FAM49AQ9H0Q0 323 aaPredicted RBP33.49■■■□□ 2.95
CTCF-203ENST00000566078 UNC93B1Q9H1C4 597 aa33.49■■■□□ 2.95
CTCF-203ENST00000566078 SMIM35A0A1B0GVV1 85 aa33.48■■■□□ 2.95
CTCF-203ENST00000566078 ANKRD63C9JTQ0 380 aa33.48■■■□□ 2.95
CTCF-203ENST00000566078 SLC16A3O15427 465 aaKnown RBP33.48■■■□□ 2.95
CTCF-203ENST00000566078 ZNF200P98182 395 aaPredicted RBP33.48■■■□□ 2.95
CTCF-203ENST00000566078 ARMCX5Q6P1M9 558 aa33.48■■■□□ 2.95
CTCF-203ENST00000566078 SLC9A9Q8IVB4 645 aa33.48■■■□□ 2.95
CTCF-203ENST00000566078 CBWD1Q9BRT8 395 aa33.48■■■□□ 2.95
CTCF-203ENST00000566078 DMAC2Q9NW81 257 aa33.48■■■□□ 2.95
CTCF-203ENST00000566078 N4BP3O15049 544 aa33.47■■■□□ 2.95
CTCF-203ENST00000566078 TPM2P07951 284 aa33.47■■■□□ 2.95
CTCF-203ENST00000566078 HSPA8P11142 646 aaKnown RBP33.47■■■□□ 2.95
CTCF-203ENST00000566078 PHKA2P46019 1235 aa33.47■■■□□ 2.95
CTCF-203ENST00000566078 CASP4P49662 377 aa33.47■■■□□ 2.95
CTCF-203ENST00000566078 SLC39A4Q6P5W5 647 aa33.47■■■□□ 2.95
CTCF-203ENST00000566078 SPC24Q8NBT2 197 aa33.47■■■□□ 2.95
CTCF-203ENST00000566078 PCIF1Q9H4Z3 704 aa33.47■■■□□ 2.95
CTCF-203ENST00000566078 RTN4Q9NQC3 1192 aaKnown RBP33.47■■■□□ 2.95
Retrieved 100 of 20,778 RNA–protein pairs in 75.7 ms