RNA–Protein interactions for RNA: ENST00000560173.1

LDLR-211, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 389 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-211ENST00000560173 HOXD11P31277 338 aaPredicted RBP10.37□□□□□ -0.75
LDLR-211ENST00000560173 SLC12A3P55017 1021 aa10.37□□□□□ -0.75
LDLR-211ENST00000560173 MBTD1Q05BQ5 628 aa10.37□□□□□ -0.75
LDLR-211ENST00000560173 GRIN2CQ14957 1233 aa10.37□□□□□ -0.75
LDLR-211ENST00000560173 KARSQ15046 597 aaKnown RBP10.37□□□□□ -0.75
LDLR-211ENST00000560173 FOXD4L6Q3SYB3 417 aaPredicted RBP10.37□□□□□ -0.75
LDLR-211ENST00000560173 SPECC1Q5M775 1068 aa10.37□□□□□ -0.75
LDLR-211ENST00000560173 CDCA2Q69YH5 1023 aaPredicted RBP10.37□□□□□ -0.75
LDLR-211ENST00000560173 ATL3Q6DD88 541 aa10.37□□□□□ -0.75
LDLR-211ENST00000560173 RINT1Q6NUQ1 792 aa10.37□□□□□ -0.75
LDLR-211ENST00000560173 FOXD4L3Q6VB84 417 aaPredicted RBP10.37□□□□□ -0.75
LDLR-211ENST00000560173 C1orf186Q6ZWK4 172 aa10.37□□□□□ -0.75
LDLR-211ENST00000560173 SPRED2Q7Z698 418 aa10.37□□□□□ -0.75
LDLR-211ENST00000560173 DAW1Q8N136 415 aa10.37□□□□□ -0.75
LDLR-211ENST00000560173 SYT2Q8N9I0 419 aaPredicted RBP10.37□□□□□ -0.75
LDLR-211ENST00000560173 KIFAP3Q92845 792 aa10.37□□□□□ -0.75
LDLR-211ENST00000560173 EPSTI1Q96J88 318 aa10.37□□□□□ -0.75
LDLR-211ENST00000560173 ANP32EQ9BTT0 268 aa10.37□□□□□ -0.75
LDLR-211ENST00000560173 CHST12Q9NRB3 414 aa10.37□□□□□ -0.75
LDLR-211ENST00000560173 BLOC1S4Q9NUP1 217 aa10.37□□□□□ -0.75
LDLR-211ENST00000560173 AGPAT5Q9NUQ2 364 aa10.37□□□□□ -0.75
LDLR-211ENST00000560173 CIZ1Q9ULV3 898 aaPredicted RBP10.37□□□□□ -0.75
LDLR-211ENST00000560173 PIN4Q9Y237 131 aaKnown RBP10.37□□□□□ -0.75
LDLR-211ENST00000560173 ADGRA3Q8IWK6 1321 aa10.36□□□□□ -0.75
LDLR-211ENST00000560173 LRRIQ4A6NIV6 560 aa10.36□□□□□ -0.75
LDLR-211ENST00000560173 INO80B-WBP1J3KQ70 363 aa10.36□□□□□ -0.75
LDLR-211ENST00000560173 TSPAN1O60635 241 aa10.36□□□□□ -0.75
LDLR-211ENST00000560173 HIP1RO75146 1068 aa10.36□□□□□ -0.75
LDLR-211ENST00000560173 PPP6R2O75170 966 aa10.36□□□□□ -0.75
LDLR-211ENST00000560173 SSBP05455 408 aaKnown RBP eCLIP10.36□□□□□ -0.75
LDLR-211ENST00000560173 ZSCAN20P17040 1043 aaPredicted RBP10.36□□□□□ -0.75
LDLR-211ENST00000560173 ATF7P17544 494 aaPredicted RBP10.36□□□□□ -0.75
LDLR-211ENST00000560173 IBSPP21815 317 aaPredicted RBP10.36□□□□□ -0.75
LDLR-211ENST00000560173 HOXA11P31270 313 aaPredicted RBP10.36□□□□□ -0.75
LDLR-211ENST00000560173 NAMPTP43490 491 aa10.36□□□□□ -0.75
LDLR-211ENST00000560173 DNM1Q05193 864 aaKnown RBP10.36□□□□□ -0.75
LDLR-211ENST00000560173 MAPK7Q13164 816 aa10.36□□□□□ -0.75
LDLR-211ENST00000560173 PPP2R5AQ15172 486 aa10.36□□□□□ -0.75
LDLR-211ENST00000560173 PCBP1Q15365 356 aaKnown RBP eCLIP10.36□□□□□ -0.75
LDLR-211ENST00000560173 AMHR2Q16671 573 aa10.36□□□□□ -0.75
LDLR-211ENST00000560173 ZNF598Q86UK7 904 aaKnown RBP10.36□□□□□ -0.75
LDLR-211ENST00000560173 ECHDC2Q86YB7 292 aa10.36□□□□□ -0.75
LDLR-211ENST00000560173 RASSF8Q8NHQ8 419 aa10.36□□□□□ -0.75
LDLR-211ENST00000560173 RAD54LQ92698 747 aa10.36□□□□□ -0.75
LDLR-211ENST00000560173 ZNF689Q96CS4 500 aaPredicted RBP10.36□□□□□ -0.75
LDLR-211ENST00000560173 TIPINQ9BVW5 301 aa10.36□□□□□ -0.75
LDLR-211ENST00000560173 TRAIPQ9BWF2 469 aa10.36□□□□□ -0.75
LDLR-211ENST00000560173 ELAC1Q9H777 363 aaKnown RBP10.36□□□□□ -0.75
LDLR-211ENST00000560173 POLD4Q9HCU8 107 aa10.36□□□□□ -0.75
LDLR-211ENST00000560173 RNF216Q9NWF9 866 aaPredicted RBP10.36□□□□□ -0.75
LDLR-211ENST00000560173 TMEM161AQ9NX61 479 aa10.36□□□□□ -0.75
LDLR-211ENST00000560173 DACT1Q9NYF0 836 aa10.36□□□□□ -0.75
LDLR-211ENST00000560173 KCND2Q9NZV8 630 aa10.36□□□□□ -0.75
LDLR-211ENST00000560173 LRFN2Q9ULH4 789 aa10.36□□□□□ -0.75
LDLR-211ENST00000560173 BDP1A6H8Y1 2624 aa10.36□□□□□ -0.75
LDLR-211ENST00000560173 A0A0U1RQF3 1178 aa10.35□□□□□ -0.75
LDLR-211ENST00000560173 EPOPA6NHQ4 379 aa10.35□□□□□ -0.75
LDLR-211ENST00000560173 ERLIN2O94905 339 aa10.35□□□□□ -0.75
LDLR-211ENST00000560173 LINC00271P0C7V0 271 aa10.35□□□□□ -0.75
LDLR-211ENST00000560173 DDIT3P35638 169 aa10.35□□□□□ -0.75
LDLR-211ENST00000560173 TXLNAP40222 546 aa10.35□□□□□ -0.75
LDLR-211ENST00000560173 GATMP50440 423 aa10.35□□□□□ -0.75
LDLR-211ENST00000560173 ERVK-21P61565 698 aa10.35□□□□□ -0.75
LDLR-211ENST00000560173 ARSHQ5FYA8 562 aa10.35□□□□□ -0.75
LDLR-211ENST00000560173 TWF2Q6IBS0 349 aaKnown RBP10.35□□□□□ -0.75
LDLR-211ENST00000560173 PPP4R3CPQ6ZMV5 832 aa10.35□□□□□ -0.75
LDLR-211ENST00000560173 ZBTB8OSQ8IWT0 167 aa10.35□□□□□ -0.75
LDLR-211ENST00000560173 CMTR2Q8IYT2 770 aaKnown RBP10.35□□□□□ -0.75
LDLR-211ENST00000560173 KCNG4Q8TDN1 519 aa10.35□□□□□ -0.75
LDLR-211ENST00000560173 ARNTL2Q8WYA1 636 aa10.35□□□□□ -0.75
LDLR-211ENST00000560173 CCDC51Q96ER9 411 aa10.35□□□□□ -0.75
LDLR-211ENST00000560173 IFT74Q96LB3 600 aa10.35□□□□□ -0.75
LDLR-211ENST00000560173 DRC1Q96MC2 740 aa10.35□□□□□ -0.75
LDLR-211ENST00000560173 TGS1Q96RS0 853 aaKnown RBP10.35□□□□□ -0.75
LDLR-211ENST00000560173 KIFC3Q9BVG8 833 aa10.35□□□□□ -0.75
LDLR-211ENST00000560173 CCDC113Q9H0I3 377 aa10.35□□□□□ -0.75
LDLR-211ENST00000560173 C2orf40Q9H1Z8 148 aa10.35□□□□□ -0.75
LDLR-211ENST00000560173 PRDM12Q9H4Q4 367 aa10.35□□□□□ -0.75
LDLR-211ENST00000560173 CERS4Q9HA82 394 aa10.35□□□□□ -0.75
LDLR-211ENST00000560173 RNF19AQ9NV58 838 aa10.35□□□□□ -0.75
LDLR-211ENST00000560173 CHMP5Q9NZZ3 219 aa10.35□□□□□ -0.75
LDLR-211ENST00000560173 STK17AQ9UEE5 414 aa10.35□□□□□ -0.75
LDLR-211ENST00000560173 CFAP45Q9UL16 551 aa10.35□□□□□ -0.75
LDLR-211ENST00000560173 PCDHB7Q9Y5E2 793 aa10.35□□□□□ -0.75
LDLR-211ENST00000560173 REV3LO60673 3130 aa10.34□□□□□ -0.75
LDLR-211ENST00000560173 A0A087X0B3 334 aa10.34□□□□□ -0.75
LDLR-211ENST00000560173 NPHP3-ACAD11A0A0J9YXS1 232 aa10.34□□□□□ -0.75
LDLR-211ENST00000560173 B4GALT5O43286 388 aa10.34□□□□□ -0.75
LDLR-211ENST00000560173 CUTAO60888 179 aa10.34□□□□□ -0.75
LDLR-211ENST00000560173 FGFR1P11362 822 aa10.34□□□□□ -0.75
LDLR-211ENST00000560173 ARF4P18085 180 aaPredicted RBP10.34□□□□□ -0.75
LDLR-211ENST00000560173 AXLP30530 894 aa10.34□□□□□ -0.75
LDLR-211ENST00000560173 NPTX2P47972 431 aa10.34□□□□□ -0.75
LDLR-211ENST00000560173 RAB27AP51159 221 aa10.34□□□□□ -0.75
LDLR-211ENST00000560173 RAD51AP2Q09MP3 1159 aa10.34□□□□□ -0.75
LDLR-211ENST00000560173 BTG3Q14201 252 aaPredicted RBP10.34□□□□□ -0.75
LDLR-211ENST00000560173 MCM6Q14566 821 aa10.34□□□□□ -0.75
LDLR-211ENST00000560173 FAM187BQ17R55 369 aa10.34□□□□□ -0.75
LDLR-211ENST00000560173 PAN2Q504Q3 1202 aaKnown RBP10.34□□□□□ -0.75
LDLR-211ENST00000560173 NAALADL2Q58DX5 795 aa10.34□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms