RNA–Protein interactions for RNA: ENST00000547825.5

LIMA1-203, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-203ENST00000547825 PYM1Q9BRP8 204 aaKnown RBP5.96□□□□□ -1.45
LIMA1-203ENST00000547825 AP1M1Q9BXS5 423 aa5.96□□□□□ -1.45
LIMA1-203ENST00000547825 TSGA10Q9BZW7 698 aa5.96□□□□□ -1.45
LIMA1-203ENST00000547825 MLXIPQ9HAP2 919 aa5.96□□□□□ -1.45
LIMA1-203ENST00000547825 SNTG2Q9NY99 539 aa5.96□□□□□ -1.45
LIMA1-203ENST00000547825 ZSWIM5Q9P217 1185 aa5.96□□□□□ -1.45
LIMA1-203ENST00000547825 ZFATQ9P243 1243 aa5.96□□□□□ -1.45
LIMA1-203ENST00000547825 ANKIB1Q9P2G1 1089 aa5.96□□□□□ -1.45
LIMA1-203ENST00000547825 HCSTQ9UBK5 93 aa5.96□□□□□ -1.45
LIMA1-203ENST00000547825 SUFUQ9UMX1 484 aa5.96□□□□□ -1.45
LIMA1-203ENST00000547825 ATP8A1Q9Y2Q0 1164 aa5.96□□□□□ -1.45
LIMA1-203ENST00000547825 KRIT1O00522 736 aa5.96□□□□□ -1.46
LIMA1-203ENST00000547825 GIPC1O14908 333 aa5.96□□□□□ -1.46
LIMA1-203ENST00000547825 MMP20O60882 483 aa5.96□□□□□ -1.46
LIMA1-203ENST00000547825 RPN1P04843 607 aaKnown RBP5.96□□□□□ -1.46
LIMA1-203ENST00000547825 GRIA4P48058 902 aa5.96□□□□□ -1.46
LIMA1-203ENST00000547825 POLR2FP61218 127 aaKnown RBP5.96□□□□□ -1.46
LIMA1-203ENST00000547825 ATP11AP98196 1134 aa5.96□□□□□ -1.46
LIMA1-203ENST00000547825 KCTD19Q17RG1 926 aaPredicted RBP5.96□□□□□ -1.46
LIMA1-203ENST00000547825 KRT79Q5XKE5 535 aa5.96□□□□□ -1.46
LIMA1-203ENST00000547825 PEX26Q7Z412 305 aa5.96□□□□□ -1.46
LIMA1-203ENST00000547825 FMNL3Q8IVF7 1028 aa5.96□□□□□ -1.46
LIMA1-203ENST00000547825 TC2NQ8N9U0 490 aa5.96□□□□□ -1.46
LIMA1-203ENST00000547825 CCDC63Q8NA47 563 aa5.96□□□□□ -1.46
LIMA1-203ENST00000547825 GOLM1Q8NBJ4 401 aa5.96□□□□□ -1.46
LIMA1-203ENST00000547825 RHOVQ96L33 236 aa5.96□□□□□ -1.46
LIMA1-203ENST00000547825 MAP3K14Q99558 947 aa5.96□□□□□ -1.46
LIMA1-203ENST00000547825 CD248Q9HCU0 757 aa5.96□□□□□ -1.46
LIMA1-203ENST00000547825 MLXIPLQ9NP71 852 aa5.96□□□□□ -1.46
LIMA1-203ENST00000547825 PACSIN2Q9UNF0 486 aaPredicted RBP5.96□□□□□ -1.46
LIMA1-203ENST00000547825 CTDP1Q9Y5B0 961 aaPredicted RBP5.96□□□□□ -1.46
LIMA1-203ENST00000547825 MYH10P35580 1976 aa5.96□□□□□ -1.46
LIMA1-203ENST00000547825 A0A087X0B3 334 aa5.96□□□□□ -1.46
LIMA1-203ENST00000547825 TTC26A0AVF1 554 aa5.96□□□□□ -1.46
LIMA1-203ENST00000547825 YDJCA8MPS7 323 aa5.96□□□□□ -1.46
LIMA1-203ENST00000547825 PF4P02776 101 aa5.96□□□□□ -1.46
LIMA1-203ENST00000547825 CTNNA2P26232 953 aa5.96□□□□□ -1.46
LIMA1-203ENST00000547825 GPC1P35052 558 aa5.96□□□□□ -1.46
LIMA1-203ENST00000547825 DNM2P50570 870 aa5.96□□□□□ -1.46
LIMA1-203ENST00000547825 ZNF157P51786 506 aaPredicted RBP5.96□□□□□ -1.46
LIMA1-203ENST00000547825 ZNF131P52739 623 aa5.96□□□□□ -1.46
LIMA1-203ENST00000547825 MYO1EQ12965 1108 aa5.96□□□□□ -1.46
LIMA1-203ENST00000547825 BIRC2Q13490 618 aa5.96□□□□□ -1.46
LIMA1-203ENST00000547825 PTPAQ15257 358 aa5.96□□□□□ -1.46
LIMA1-203ENST00000547825 IFI16Q16666 785 aaKnown RBP5.96□□□□□ -1.46
LIMA1-203ENST00000547825 HERC4Q5GLZ8 1057 aaPredicted RBP5.96□□□□□ -1.46
LIMA1-203ENST00000547825 NFRKBQ6P4R8 1299 aa5.96□□□□□ -1.46
LIMA1-203ENST00000547825 INTS8Q75QN2 995 aaKnown RBP5.96□□□□□ -1.46
LIMA1-203ENST00000547825 SV2BQ7L1I2 683 aa5.96□□□□□ -1.46
LIMA1-203ENST00000547825 PRPF38AQ8NAV1 312 aaKnown RBP5.96□□□□□ -1.46
LIMA1-203ENST00000547825 CCDC26Q8TAB7 109 aa5.96□□□□□ -1.46
LIMA1-203ENST00000547825 RPGRIP1Q96KN7 1286 aa5.96□□□□□ -1.46
LIMA1-203ENST00000547825 NHEJ1Q9H9Q4 299 aaPredicted RBP5.96□□□□□ -1.46
LIMA1-203ENST00000547825 FAM184BQ9ULE4 1060 aa5.96□□□□□ -1.46
LIMA1-203ENST00000547825 UTP11Q9Y3A2 253 aaKnown RBP5.96□□□□□ -1.46
LIMA1-203ENST00000547825 ZMYM6O95789 1325 aa5.95□□□□□ -1.46
LIMA1-203ENST00000547825 SH3TC1Q8TE82 1336 aa5.95□□□□□ -1.46
LIMA1-203ENST00000547825 LRRIQ3A6PVS8 624 aaPredicted RBP5.95□□□□□ -1.46
LIMA1-203ENST00000547825 NKRFO15226 690 aaKnown RBP eCLIP5.95□□□□□ -1.46
LIMA1-203ENST00000547825 RGS16O15492 202 aaPredicted RBP5.95□□□□□ -1.46
LIMA1-203ENST00000547825 PPP6R2O75170 966 aa5.95□□□□□ -1.46
LIMA1-203ENST00000547825 GOLGA8HP0CJ92 632 aa5.95□□□□□ -1.46
LIMA1-203ENST00000547825 TCP1P17987 556 aaKnown RBP5.95□□□□□ -1.46
LIMA1-203ENST00000547825 GARTP22102 1010 aa5.95□□□□□ -1.46
LIMA1-203ENST00000547825 GUCY1A2P33402 732 aa5.95□□□□□ -1.46
LIMA1-203ENST00000547825 TECP42680 631 aa5.95□□□□□ -1.46
LIMA1-203ENST00000547825 PHKA1P46020 1223 aa5.95□□□□□ -1.46
LIMA1-203ENST00000547825 ERFP50548 548 aa5.95□□□□□ -1.46
LIMA1-203ENST00000547825 IRAK1P51617 712 aa5.95□□□□□ -1.46
LIMA1-203ENST00000547825 PICALMQ13492 652 aa5.95□□□□□ -1.46
LIMA1-203ENST00000547825 RASA3Q14644 834 aa5.95□□□□□ -1.46
LIMA1-203ENST00000547825 LRRC31Q6UY01 552 aa5.95□□□□□ -1.46
LIMA1-203ENST00000547825 CYB5R4Q7L1T6 521 aa5.95□□□□□ -1.46
LIMA1-203ENST00000547825 GSTA5Q7RTV2 222 aa5.95□□□□□ -1.46
LIMA1-203ENST00000547825 IFNL3Q8IZI9 196 aa5.95□□□□□ -1.46
LIMA1-203ENST00000547825 COG1Q8WTW3 980 aa5.95□□□□□ -1.46
LIMA1-203ENST00000547825 PANX2Q96RD6 677 aa5.95□□□□□ -1.46
LIMA1-203ENST00000547825 LRRC1Q9BTT6 524 aa5.95□□□□□ -1.46
LIMA1-203ENST00000547825 YIPF3Q9GZM5 350 aa5.95□□□□□ -1.46
LIMA1-203ENST00000547825 KLHL42Q9P2K6 505 aa5.95□□□□□ -1.46
LIMA1-203ENST00000547825 UTP18Q9Y5J1 556 aaKnown RBP eCLIP5.95□□□□□ -1.46
LIMA1-203ENST00000547825 CYP2D7A0A087X1C5 515 aa5.95□□□□□ -1.46
LIMA1-203ENST00000547825 ENO4A6NNW6 628 aa5.95□□□□□ -1.46
LIMA1-203ENST00000547825 F8W031 263 aaPredicted RBP5.95□□□□□ -1.46
LIMA1-203ENST00000547825 H0YIN7 160 aa5.95□□□□□ -1.46
LIMA1-203ENST00000547825 H7C1D1 291 aa5.95□□□□□ -1.46
LIMA1-203ENST00000547825 CHUKO15111 745 aa5.95□□□□□ -1.46
LIMA1-203ENST00000547825 SKAP2O75563 359 aaPredicted RBP5.95□□□□□ -1.46
LIMA1-203ENST00000547825 BMP1P13497 986 aa5.95□□□□□ -1.46
LIMA1-203ENST00000547825 PDE6AP16499 860 aa5.95□□□□□ -1.46
LIMA1-203ENST00000547825 CALML3P27482 149 aa5.95□□□□□ -1.46
LIMA1-203ENST00000547825 HNRNPH1P31943 449 aaKnown RBP5.95□□□□□ -1.46
LIMA1-203ENST00000547825 CALCOCO2Q13137 446 aa5.95□□□□□ -1.46
LIMA1-203ENST00000547825 CUL4BQ13620 913 aa5.95□□□□□ -1.46
LIMA1-203ENST00000547825 SETDB1Q15047 1291 aa5.95□□□□□ -1.46
LIMA1-203ENST00000547825 UAP1Q16222 522 aaPredicted RBP5.95□□□□□ -1.46
LIMA1-203ENST00000547825 BEND6Q5SZJ8 279 aaPredicted RBP5.95□□□□□ -1.46
LIMA1-203ENST00000547825 RASIP1Q5U651 963 aa5.95□□□□□ -1.46
LIMA1-203ENST00000547825 AP1ARQ63HQ0 302 aa5.95□□□□□ -1.46
LIMA1-203ENST00000547825 ZNF598Q86UK7 904 aaKnown RBP5.95□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms