RNA–Protein interactions for RNA: ENST00000542286.5

DDX55-209, Transcript of DEAD-box helicase 55, humanhuman

TSL 2

Gene DDX55, Length 2,767 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-209ENST00000542286 NBPF12Q5TAG4 269 aaPredicted RBP16.03■□□□□ 0.16
DDX55-209ENST00000542286 USP38Q8NB14 1042 aa16.03■□□□□ 0.16
DDX55-209ENST00000542286 TAF4BQ92750 862 aa16.03■□□□□ 0.16
DDX55-209ENST00000542286 CCDC127Q96BQ5 260 aa16.03■□□□□ 0.16
DDX55-209ENST00000542286 THAP2Q9H0W7 228 aa16.03■□□□□ 0.16
DDX55-209ENST00000542286 AGO4Q9HCK5 861 aaKnown RBP16.03■□□□□ 0.16
DDX55-209ENST00000542286 RGS17Q9UGC6 210 aaPredicted RBP16.03■□□□□ 0.16
DDX55-209ENST00000542286 PPP1R9AQ9ULJ8 1098 aa16.03■□□□□ 0.16
DDX55-209ENST00000542286 GJA3Q9Y6H8 435 aa16.03■□□□□ 0.16
DDX55-209ENST00000542286 BUB1BO60566 1050 aaPredicted RBP16.02■□□□□ 0.16
DDX55-209ENST00000542286 BFSP1Q12934 665 aa16.02■□□□□ 0.16
DDX55-209ENST00000542286 PRPF4BQ13523 1007 aaKnown RBP16.02■□□□□ 0.16
DDX55-209ENST00000542286 PEX26Q7Z412 305 aa16.02■□□□□ 0.16
DDX55-209ENST00000542286 FAM160B2Q86V87 743 aa16.02■□□□□ 0.16
DDX55-209ENST00000542286 ATG4CQ96DT6 458 aa16.02■□□□□ 0.16
DDX55-209ENST00000542286 CCDC43Q96MW1 224 aaKnown RBP16.02■□□□□ 0.16
DDX55-209ENST00000542286 TEPSINQ96N21 525 aa16.02■□□□□ 0.16
DDX55-209ENST00000542286 PSMD1Q99460 953 aa16.02■□□□□ 0.16
DDX55-209ENST00000542286 UBE2TQ9NPD8 197 aaPredicted RBP16.02■□□□□ 0.16
DDX55-209ENST00000542286 TOPORSQ9NS56 1045 aaPredicted RBP16.02■□□□□ 0.16
DDX55-209ENST00000542286 ATAD5Q96QE3 1844 aa16.02■□□□□ 0.16
DDX55-209ENST00000542286 TMEM110-MUSTN1A8MSY1 372 aa16.02■□□□□ 0.15
DDX55-209ENST00000542286 VCAM1P19320 739 aa16.02■□□□□ 0.15
DDX55-209ENST00000542286 FAM102BQ5T8I3 360 aa16.02■□□□□ 0.15
DDX55-209ENST00000542286 PRPF38AQ8NAV1 312 aaKnown RBP16.02■□□□□ 0.15
DDX55-209ENST00000542286 SLC35G2Q8TBE7 412 aa16.02■□□□□ 0.15
DDX55-209ENST00000542286 ZIM3Q96PE6 472 aa16.02■□□□□ 0.15
DDX55-209ENST00000542286 CAPS2Q9BXY5 557 aa16.02■□□□□ 0.15
DDX55-209ENST00000542286 TRIM31Q9BZY9 425 aa16.02■□□□□ 0.15
DDX55-209ENST00000542286 DMAC2Q9NW81 257 aa16.02■□□□□ 0.15
DDX55-209ENST00000542286 TNS1Q9HBL0 1735 aaKnown RBP16.02■□□□□ 0.15
DDX55-209ENST00000542286 SLC26A4O43511 780 aa16.01■□□□□ 0.15
DDX55-209ENST00000542286 YWHABP31946 246 aaKnown RBP16.01■□□□□ 0.15
DDX55-209ENST00000542286 PRKCIP41743 596 aa16.01■□□□□ 0.15
DDX55-209ENST00000542286 ERVK-9P63128 1117 aa16.01■□□□□ 0.15
DDX55-209ENST00000542286 TTMPQ5BVD1 217 aa16.01■□□□□ 0.15
DDX55-209ENST00000542286 NEUROG2Q9H2A3 272 aa16.01■□□□□ 0.15
DDX55-209ENST00000542286 RPAP3Q9H6T3 665 aaPredicted RBP16.01■□□□□ 0.15
DDX55-209ENST00000542286 DONSONQ9NYP3 566 aa16.01■□□□□ 0.15
DDX55-209ENST00000542286 AMACRQ9UHK6 382 aa16.01■□□□□ 0.15
DDX55-209ENST00000542286 COG5Q9UP83 839 aa16.01■□□□□ 0.15
DDX55-209ENST00000542286 NOC2LQ9Y3T9 749 aaKnown RBP16.01■□□□□ 0.15
DDX55-209ENST00000542286 ANKRD63C9JTQ0 380 aa16.01■□□□□ 0.15
DDX55-209ENST00000542286 CLGNO14967 610 aa16.01■□□□□ 0.15
DDX55-209ENST00000542286 PPP1R12BO60237 982 aaPredicted RBP16.01■□□□□ 0.15
DDX55-209ENST00000542286 PPP1R37O75864 691 aa16.01■□□□□ 0.15
DDX55-209ENST00000542286 ADRB2P07550 413 aa16.01■□□□□ 0.15
DDX55-209ENST00000542286 PPFIA1Q13136 1202 aa16.01■□□□□ 0.15
DDX55-209ENST00000542286 HLTFQ14527 1009 aaKnown RBP eCLIP16.01■□□□□ 0.15
DDX55-209ENST00000542286 C1orf220Q5T0J3 134 aa16.01■□□□□ 0.15
DDX55-209ENST00000542286 CBWD2Q8IUF1 395 aa16.01■□□□□ 0.15
DDX55-209ENST00000542286 OR2W6PQ8NHA6 318 aa16.01■□□□□ 0.15
DDX55-209ENST00000542286 RMDN3Q96TC7 470 aa16.01■□□□□ 0.15
DDX55-209ENST00000542286 TMOD4Q9NZQ9 345 aa16.01■□□□□ 0.15
DDX55-209ENST00000542286 CCDC169A6NNP5 214 aa16■□□□□ 0.15
DDX55-209ENST00000542286 HOXA7P31268 230 aaPredicted RBP16■□□□□ 0.15
DDX55-209ENST00000542286 FLT3P36888 993 aa16■□□□□ 0.15
DDX55-209ENST00000542286 ATP1A2P50993 1020 aa16■□□□□ 0.15
DDX55-209ENST00000542286 SETQ01105 290 aaPredicted RBP16■□□□□ 0.15
DDX55-209ENST00000542286 MAP2K1Q02750 393 aaPredicted RBP16■□□□□ 0.15
DDX55-209ENST00000542286 APEX2Q9UBZ4 518 aa16■□□□□ 0.15
DDX55-209ENST00000542286 NENFQ9UMX5 172 aa16■□□□□ 0.15
DDX55-209ENST00000542286 P4HBP07237 508 aaKnown RBP16■□□□□ 0.15
DDX55-209ENST00000542286 GNGT1P63211 74 aa16■□□□□ 0.15
DDX55-209ENST00000542286 PGM5Q15124 567 aa16■□□□□ 0.15
DDX55-209ENST00000542286 XKR9Q5GH70 373 aa16■□□□□ 0.15
DDX55-209ENST00000542286 CIAPIN1Q6FI81 312 aa16■□□□□ 0.15
DDX55-209ENST00000542286 EP400NLQ6ZTU2 488 aa16■□□□□ 0.15
DDX55-209ENST00000542286 ARHGAP27Q6ZUM4 889 aa16■□□□□ 0.15
DDX55-209ENST00000542286 HAUS6Q7Z4H7 955 aa16■□□□□ 0.15
DDX55-209ENST00000542286 LMO3Q8TAP4 145 aa16■□□□□ 0.15
DDX55-209ENST00000542286 STK33Q9BYT3 514 aa16■□□□□ 0.15
DDX55-209ENST00000542286 EHMT1Q9H9B1 1298 aa16■□□□□ 0.15
DDX55-209ENST00000542286 EIF3HO15372 352 aaKnown RBP eCLIP15.99■□□□□ 0.15
DDX55-209ENST00000542286 ZBTB48P10074 688 aaPredicted RBP15.99■□□□□ 0.15
DDX55-209ENST00000542286 MARCKSL1P49006 195 aa15.99■□□□□ 0.15
DDX55-209ENST00000542286 EPHB4P54760 987 aa15.99■□□□□ 0.15
DDX55-209ENST00000542286 ITIH3Q06033 890 aa15.99■□□□□ 0.15
DDX55-209ENST00000542286 BAATQ14032 418 aaPredicted RBP15.99■□□□□ 0.15
DDX55-209ENST00000542286 DCAF12L1Q5VU92 463 aa15.99■□□□□ 0.15
DDX55-209ENST00000542286 PHLDB2Q86SQ0 1253 aa15.99■□□□□ 0.15
DDX55-209ENST00000542286 SLC30A5Q8TAD4 765 aa15.99■□□□□ 0.15
DDX55-209ENST00000542286 BTBD6Q96KE9 485 aa15.99■□□□□ 0.15
DDX55-209ENST00000542286 HSPBP1Q9NZL4 362 aa15.99■□□□□ 0.15
DDX55-209ENST00000542286 SUFUQ9UMX1 484 aa15.99■□□□□ 0.15
DDX55-209ENST00000542286 COL2A1P02458 1487 aaPredicted RBP15.99■□□□□ 0.15
DDX55-209ENST00000542286 TBC1D12O60347 775 aa15.99■□□□□ 0.15
DDX55-209ENST00000542286 MYCNP04198 464 aaPredicted RBP15.99■□□□□ 0.15
DDX55-209ENST00000542286 FERP16591 822 aa15.99■□□□□ 0.15
DDX55-209ENST00000542286 QARSP47897 775 aaKnown RBP15.99■□□□□ 0.15
DDX55-209ENST00000542286 LMBRD2Q68DH5 695 aaPredicted RBP15.99■□□□□ 0.15
DDX55-209ENST00000542286 FAM83AQ86UY5 434 aa15.99■□□□□ 0.15
DDX55-209ENST00000542286 NT5DC3Q86UY8 548 aa15.99■□□□□ 0.15
DDX55-209ENST00000542286 CNPY4Q8N129 248 aa15.99■□□□□ 0.15
DDX55-209ENST00000542286 BSNDQ8WZ55 320 aa15.99■□□□□ 0.15
DDX55-209ENST00000542286 RIT2Q99578 217 aa15.99■□□□□ 0.15
DDX55-209ENST00000542286 STRA6Q9BX79 667 aa15.99■□□□□ 0.15
DDX55-209ENST00000542286 SLC38A10Q9HBR0 1119 aa15.99■□□□□ 0.15
DDX55-209ENST00000542286 LRRC4CQ9HCJ2 640 aa15.99■□□□□ 0.15
DDX55-209ENST00000542286 GDF3Q9NR23 364 aa15.99■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 50.6 ms