RNA–Protein interactions for RNA: ENST00000462613.1

SF3B1-206, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 3

Gene SF3B1, Length 141 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-206ENST00000462613 MYCT1Q8N699 235 aa7.04□□□□□ -1.28
SF3B1-206ENST00000462613 CNNM3Q8NE01 707 aa7.04□□□□□ -1.28
SF3B1-206ENST00000462613 PHOSPHO2Q8TCD6 241 aa7.04□□□□□ -1.28
SF3B1-206ENST00000462613 HERVK_113Q902F9 699 aa7.04□□□□□ -1.28
SF3B1-206ENST00000462613 DDX12PQ92771 950 aa7.04□□□□□ -1.28
SF3B1-206ENST00000462613 ZNF668Q96K58 619 aaPredicted RBP7.04□□□□□ -1.28
SF3B1-206ENST00000462613 PRIMPOLQ96LW4 560 aa7.04□□□□□ -1.28
SF3B1-206ENST00000462613 BUD13Q9BRD0 619 aaKnown RBP eCLIP7.04□□□□□ -1.28
SF3B1-206ENST00000462613 REEP2Q9BRK0 252 aa7.04□□□□□ -1.28
SF3B1-206ENST00000462613 ZBED2Q9BTP6 218 aa7.04□□□□□ -1.28
SF3B1-206ENST00000462613 RUSC1Q9BVN2 902 aa7.04□□□□□ -1.28
SF3B1-206ENST00000462613 TRIM6Q9C030 488 aaPredicted RBP7.04□□□□□ -1.28
SF3B1-206ENST00000462613 GPRC5CQ9NQ84 441 aa7.04□□□□□ -1.28
SF3B1-206ENST00000462613 CHST12Q9NRB3 414 aa7.04□□□□□ -1.28
SF3B1-206ENST00000462613 BLOC1S4Q9NUP1 217 aa7.04□□□□□ -1.28
SF3B1-206ENST00000462613 PADI3Q9ULW8 664 aa7.04□□□□□ -1.28
SF3B1-206ENST00000462613 ST3GAL5Q9UNP4 418 aa7.04□□□□□ -1.28
SF3B1-206ENST00000462613 MKI67P46013 3256 aaKnown RBP7.03□□□□□ -1.28
SF3B1-206ENST00000462613 K7ENM7 598 aa7.03□□□□□ -1.28
SF3B1-206ENST00000462613 N4BP3O15049 544 aa7.03□□□□□ -1.28
SF3B1-206ENST00000462613 HOXA2O43364 376 aa7.03□□□□□ -1.28
SF3B1-206ENST00000462613 TRAK2O60296 914 aa7.03□□□□□ -1.28
SF3B1-206ENST00000462613 ZNF202O95125 648 aa7.03□□□□□ -1.28
SF3B1-206ENST00000462613 KIF20AO95235 890 aa7.03□□□□□ -1.28
SF3B1-206ENST00000462613 PRKCBP05771 671 aa7.03□□□□□ -1.28
SF3B1-206ENST00000462613 LIG1P18858 919 aa7.03□□□□□ -1.28
SF3B1-206ENST00000462613 AFMP43652 599 aa7.03□□□□□ -1.28
SF3B1-206ENST00000462613 NPTX2P47972 431 aa7.03□□□□□ -1.28
SF3B1-206ENST00000462613 RAB27AP51159 221 aa7.03□□□□□ -1.28
SF3B1-206ENST00000462613 MKRN4PQ13434 485 aaPredicted RBP7.03□□□□□ -1.28
SF3B1-206ENST00000462613 PRPF4BQ13523 1007 aaKnown RBP7.03□□□□□ -1.28
SF3B1-206ENST00000462613 ALCAMQ13740 583 aa7.03□□□□□ -1.28
SF3B1-206ENST00000462613 CAPSQ13938 189 aa7.03□□□□□ -1.28
SF3B1-206ENST00000462613 HERC4Q5GLZ8 1057 aaPredicted RBP7.03□□□□□ -1.28
SF3B1-206ENST00000462613 SLC24A5Q71RS6 500 aa7.03□□□□□ -1.28
SF3B1-206ENST00000462613 FAM228AQ86W67 206 aa7.03□□□□□ -1.28
SF3B1-206ENST00000462613 IFNLR1Q8IU57 520 aaPredicted RBP7.03□□□□□ -1.28
SF3B1-206ENST00000462613 KSR1Q8IVT5 923 aa7.03□□□□□ -1.28
SF3B1-206ENST00000462613 ABI1Q8IZP0 508 aa7.03□□□□□ -1.28
SF3B1-206ENST00000462613 MYOCDQ8IZQ8 938 aa7.03□□□□□ -1.28
SF3B1-206ENST00000462613 TMEM87AQ8NBN3 555 aa7.03□□□□□ -1.28
SF3B1-206ENST00000462613 ASAP3Q8TDY4 903 aa7.03□□□□□ -1.28
SF3B1-206ENST00000462613 SPIRE2Q8WWL2 714 aa7.03□□□□□ -1.28
SF3B1-206ENST00000462613 RSPH1Q8WYR4 309 aa7.03□□□□□ -1.28
SF3B1-206ENST00000462613 CCDC51Q96ER9 411 aa7.03□□□□□ -1.28
SF3B1-206ENST00000462613 BICD1Q96G01 975 aa7.03□□□□□ -1.28
SF3B1-206ENST00000462613 ADAMTS10Q9H324 1103 aa7.03□□□□□ -1.28
SF3B1-206ENST00000462613 TMEM134Q9H6X4 195 aa7.03□□□□□ -1.28
SF3B1-206ENST00000462613 MRPL44Q9H9J2 332 aaKnown RBP7.03□□□□□ -1.28
SF3B1-206ENST00000462613 IFT122Q9HBG6 1241 aa7.03□□□□□ -1.28
SF3B1-206ENST00000462613 ERVK-5Q9HDB9 667 aa7.03□□□□□ -1.28
SF3B1-206ENST00000462613 PANK4Q9NVE7 773 aa7.03□□□□□ -1.28
SF3B1-206ENST00000462613 KBTBD4Q9NVX7 518 aa7.03□□□□□ -1.28
SF3B1-206ENST00000462613 MSRAQ9UJ68 235 aa7.03□□□□□ -1.28
SF3B1-206ENST00000462613 EXOC7Q9UPT5 735 aa7.03□□□□□ -1.28
SF3B1-206ENST00000462613 PIN4Q9Y237 131 aaKnown RBP7.03□□□□□ -1.28
SF3B1-206ENST00000462613 NOC2LQ9Y3T9 749 aaKnown RBP7.03□□□□□ -1.28
SF3B1-206ENST00000462613 PCDHB7Q9Y5E2 793 aa7.03□□□□□ -1.28
SF3B1-206ENST00000462613 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP7.02□□□□□ -1.29
SF3B1-206ENST00000462613 FAM237AA0A1B0GTK4 181 aa7.02□□□□□ -1.29
SF3B1-206ENST00000462613 HSFX4A0A1B0GTS1 333 aaPredicted RBP7.02□□□□□ -1.29
SF3B1-206ENST00000462613 HSFX3A0A1B0GWH4 333 aaPredicted RBP7.02□□□□□ -1.29
SF3B1-206ENST00000462613 PVALEFA0A1B0GWK0 134 aa7.02□□□□□ -1.29
SF3B1-206ENST00000462613 MYMKA6NI61 221 aa7.02□□□□□ -1.29
SF3B1-206ENST00000462613 SLC16A4O15374 487 aa7.02□□□□□ -1.29
SF3B1-206ENST00000462613 PRPF40AO75400 957 aaKnown RBP7.02□□□□□ -1.29
SF3B1-206ENST00000462613 SMC2O95347 1197 aa7.02□□□□□ -1.29
SF3B1-206ENST00000462613 MAPTP10636 758 aaKnown RBP7.02□□□□□ -1.29
SF3B1-206ENST00000462613 ATP2A2P16615 1042 aaKnown RBP7.02□□□□□ -1.29
SF3B1-206ENST00000462613 PTMSP20962 102 aa7.02□□□□□ -1.29
SF3B1-206ENST00000462613 IBSPP21815 317 aaPredicted RBP7.02□□□□□ -1.29
SF3B1-206ENST00000462613 MATR3P43243 847 aaKnown RBP eCLIP7.02□□□□□ -1.29
SF3B1-206ENST00000462613 NDUFA8P51970 172 aa7.02□□□□□ -1.29
SF3B1-206ENST00000462613 ZNF131P52739 623 aa7.02□□□□□ -1.29
SF3B1-206ENST00000462613 WDR5P61964 334 aaKnown RBP7.02□□□□□ -1.29
SF3B1-206ENST00000462613 CACNB1Q02641 598 aaPredicted RBP7.02□□□□□ -1.29
SF3B1-206ENST00000462613 GIT2Q14161 759 aa7.02□□□□□ -1.29
SF3B1-206ENST00000462613 HSP90AA2PQ14568 343 aaPredicted RBP7.02□□□□□ -1.29
SF3B1-206ENST00000462613 MBTPS1Q14703 1052 aa7.02□□□□□ -1.29
SF3B1-206ENST00000462613 SHHQ15465 462 aa7.02□□□□□ -1.29
SF3B1-206ENST00000462613 RAB30Q15771 203 aa7.02□□□□□ -1.29
SF3B1-206ENST00000462613 E2F4Q16254 413 aa7.02□□□□□ -1.29
SF3B1-206ENST00000462613 FAM187BQ17R55 369 aa7.02□□□□□ -1.29
SF3B1-206ENST00000462613 NAALADL2Q58DX5 795 aa7.02□□□□□ -1.29
SF3B1-206ENST00000462613 CDCA2Q69YH5 1023 aaPredicted RBP7.02□□□□□ -1.29
SF3B1-206ENST00000462613 TRAF7Q6Q0C0 670 aa7.02□□□□□ -1.29
SF3B1-206ENST00000462613 PPP4R3CPQ6ZMV5 832 aa7.02□□□□□ -1.29
SF3B1-206ENST00000462613 KRBA2Q6ZNG9 492 aa7.02□□□□□ -1.29
SF3B1-206ENST00000462613 TMEM40Q8WWA1 233 aa7.02□□□□□ -1.29
SF3B1-206ENST00000462613 STAMQ92783 540 aa7.02□□□□□ -1.29
SF3B1-206ENST00000462613 HVCN1Q96D96 273 aa7.02□□□□□ -1.29
SF3B1-206ENST00000462613 PGBD4Q96DM1 585 aa7.02□□□□□ -1.29
SF3B1-206ENST00000462613 CHAMP1Q96JM3 812 aa7.02□□□□□ -1.29
SF3B1-206ENST00000462613 TIGD1Q96MW7 591 aa7.02□□□□□ -1.29
SF3B1-206ENST00000462613 ADAM2Q99965 735 aa7.02□□□□□ -1.29
SF3B1-206ENST00000462613 NTPCRQ9BSD7 190 aaKnown RBP7.02□□□□□ -1.29
SF3B1-206ENST00000462613 TCHPQ9BT92 498 aa7.02□□□□□ -1.29
SF3B1-206ENST00000462613 MRPL4Q9BYD3 311 aaKnown RBP7.02□□□□□ -1.29
SF3B1-206ENST00000462613 GTPBP4Q9BZE4 634 aaKnown RBP7.02□□□□□ -1.29
SF3B1-206ENST00000462613 TRIM9Q9C026 710 aa7.02□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 123.6 ms