RNA–Protein interactions for RNA: ENST00000459947.5

UBR4-208, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 2

Gene UBR4, Length 3,873 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-208ENST00000459947 AGO3Q9H9G7 860 aaKnown RBP11.82□□□□□ -0.52
UBR4-208ENST00000459947 TLL1O43897 1013 aa11.82□□□□□ -0.52
UBR4-208ENST00000459947 HIP1RO75146 1068 aa11.82□□□□□ -0.52
UBR4-208ENST00000459947 SRGAP2CP0DJJ0 459 aa11.82□□□□□ -0.52
UBR4-208ENST00000459947 FAM189BP81408 668 aa11.82□□□□□ -0.52
UBR4-208ENST00000459947 DCAF4L1Q3SXM0 396 aa11.82□□□□□ -0.52
UBR4-208ENST00000459947 RESP18Q5W5W9 173 aa11.82□□□□□ -0.52
UBR4-208ENST00000459947 TIFAQ96CG3 184 aa11.82□□□□□ -0.52
UBR4-208ENST00000459947 VWCEQ96DN2 955 aa11.82□□□□□ -0.52
UBR4-208ENST00000459947 AAASQ9NRG9 546 aa11.82□□□□□ -0.52
UBR4-208ENST00000459947 INO80B-WBP1J3KQ70 363 aa11.81□□□□□ -0.52
UBR4-208ENST00000459947 ZNF623O75123 536 aa11.81□□□□□ -0.52
UBR4-208ENST00000459947 HTRA4P83105 476 aaPredicted RBP11.81□□□□□ -0.52
UBR4-208ENST00000459947 KANK3Q6NY19 840 aa11.81□□□□□ -0.52
UBR4-208ENST00000459947 CEP57L1Q8IYX8 460 aa11.81□□□□□ -0.52
UBR4-208ENST00000459947 MYOCDQ8IZQ8 938 aa11.81□□□□□ -0.52
UBR4-208ENST00000459947 ADAM2Q99965 735 aa11.81□□□□□ -0.52
UBR4-208ENST00000459947 KMT5AQ9NQR1 393 aa11.81□□□□□ -0.52
UBR4-208ENST00000459947 STRN3Q13033 797 aa11.81□□□□□ -0.52
UBR4-208ENST00000459947 CNNM4Q6P4Q7 775 aa11.81□□□□□ -0.52
UBR4-208ENST00000459947 CCDC65Q8IXS2 484 aa11.81□□□□□ -0.52
UBR4-208ENST00000459947 PARVGQ9HBI0 331 aa11.81□□□□□ -0.52
UBR4-208ENST00000459947 STK39Q9UEW8 545 aa11.81□□□□□ -0.52
UBR4-208ENST00000459947 C9IYK1 514 aa11.81□□□□□ -0.52
UBR4-208ENST00000459947 ECM1Q16610 540 aa11.81□□□□□ -0.52
UBR4-208ENST00000459947 NAALADL2Q58DX5 795 aa11.81□□□□□ -0.52
UBR4-208ENST00000459947 SP7Q8TDD2 431 aaPredicted RBP11.81□□□□□ -0.52
UBR4-208ENST00000459947 NTPCRQ9BSD7 190 aaKnown RBP11.81□□□□□ -0.52
UBR4-208ENST00000459947 TMEM117Q9H0C3 514 aa11.81□□□□□ -0.52
UBR4-208ENST00000459947 SLC28A3Q9HAS3 691 aa11.81□□□□□ -0.52
UBR4-208ENST00000459947 IFT122Q9HBG6 1241 aa11.81□□□□□ -0.52
UBR4-208ENST00000459947 BLOC1S4Q9NUP1 217 aa11.81□□□□□ -0.52
UBR4-208ENST00000459947 HOOK1Q9UJC3 728 aaKnown RBP11.81□□□□□ -0.52
UBR4-208ENST00000459947 PCDHA7Q9UN72 937 aa11.81□□□□□ -0.52
UBR4-208ENST00000459947 PIN4Q9Y237 131 aaKnown RBP11.81□□□□□ -0.52
UBR4-208ENST00000459947 ZDHHC9Q9Y397 364 aa11.81□□□□□ -0.52
UBR4-208ENST00000459947 TMEM132AQ24JP5 1023 aa11.8□□□□□ -0.52
UBR4-208ENST00000459947 AXDND1Q5T1B0 1012 aaPredicted RBP11.8□□□□□ -0.52
UBR4-208ENST00000459947 TWF2Q6IBS0 349 aaKnown RBP11.8□□□□□ -0.52
UBR4-208ENST00000459947 YME1L1Q96TA2 773 aa11.8□□□□□ -0.52
UBR4-208ENST00000459947 EXOC7Q9UPT5 735 aa11.8□□□□□ -0.52
UBR4-208ENST00000459947 FAM237AA0A1B0GTK4 181 aa11.8□□□□□ -0.52
UBR4-208ENST00000459947 ACKR2O00590 384 aa11.8□□□□□ -0.52
UBR4-208ENST00000459947 PRKCBP05771 671 aa11.8□□□□□ -0.52
UBR4-208ENST00000459947 RB1P06400 928 aa11.8□□□□□ -0.52
UBR4-208ENST00000459947 ZNF131P52739 623 aa11.8□□□□□ -0.52
UBR4-208ENST00000459947 MBTD1Q05BQ5 628 aa11.8□□□□□ -0.52
UBR4-208ENST00000459947 DRP2Q13474 957 aa11.8□□□□□ -0.52
UBR4-208ENST00000459947 ABI1Q8IZP0 508 aa11.8□□□□□ -0.52
UBR4-208ENST00000459947 ZBTB10Q96DT7 871 aa11.8□□□□□ -0.52
UBR4-208ENST00000459947 MRPL4Q9BYD3 311 aaKnown RBP11.8□□□□□ -0.52
UBR4-208ENST00000459947 FZD8Q9H461 694 aa11.8□□□□□ -0.52
UBR4-208ENST00000459947 ST6GALNAC4Q9H4F1 302 aa11.8□□□□□ -0.52
UBR4-208ENST00000459947 CXXC1Q9P0U4 656 aaPredicted RBP11.8□□□□□ -0.52
UBR4-208ENST00000459947 A0A0U1RQF3 1178 aa11.8□□□□□ -0.52
UBR4-208ENST00000459947 LOC101059915A0A1B0GWI6 518 aaPredicted RBP11.8□□□□□ -0.52
UBR4-208ENST00000459947 ZBTB39O15060 712 aa11.8□□□□□ -0.52
UBR4-208ENST00000459947 URGCPQ8TCY9 931 aa11.8□□□□□ -0.52
UBR4-208ENST00000459947 EPSTI1Q96J88 318 aa11.8□□□□□ -0.52
UBR4-208ENST00000459947 CLIC6Q96NY7 704 aa11.8□□□□□ -0.52
UBR4-208ENST00000459947 RUSC1Q9BVN2 902 aa11.8□□□□□ -0.52
UBR4-208ENST00000459947 KANSL3Q9P2N6 904 aa11.8□□□□□ -0.52
UBR4-208ENST00000459947 CCDC169A6NNP5 214 aa11.79□□□□□ -0.52
UBR4-208ENST00000459947 K7ERI5 159 aa11.79□□□□□ -0.52
UBR4-208ENST00000459947 DNAJB2P25686 324 aa11.79□□□□□ -0.52
UBR4-208ENST00000459947 CDC25AP30304 524 aa11.79□□□□□ -0.52
UBR4-208ENST00000459947 MCM6Q14566 821 aa11.79□□□□□ -0.52
UBR4-208ENST00000459947 ECHDC2Q86YB7 292 aa11.79□□□□□ -0.52
UBR4-208ENST00000459947 FIBCD1Q8N539 461 aa11.79□□□□□ -0.52
UBR4-208ENST00000459947 MRPS27Q92552 414 aaKnown RBP11.79□□□□□ -0.52
UBR4-208ENST00000459947 TMX1Q9H3N1 280 aa11.79□□□□□ -0.52
UBR4-208ENST00000459947 CDHR5Q9HBB8 845 aa11.79□□□□□ -0.52
UBR4-208ENST00000459947 ADGRA3Q8IWK6 1321 aa11.79□□□□□ -0.52
UBR4-208ENST00000459947 PRPF4BQ13523 1007 aaKnown RBP11.79□□□□□ -0.52
UBR4-208ENST00000459947 PKP1Q13835 747 aa11.79□□□□□ -0.52
UBR4-208ENST00000459947 SLC27A1Q6PCB7 646 aa11.79□□□□□ -0.52
UBR4-208ENST00000459947 TMEM40Q8WWA1 233 aa11.79□□□□□ -0.52
UBR4-208ENST00000459947 TSPAN18Q96SJ8 248 aa11.79□□□□□ -0.52
UBR4-208ENST00000459947 SH2D3AQ9BRG2 576 aa11.79□□□□□ -0.52
UBR4-208ENST00000459947 PLVAPQ9BX97 442 aa11.79□□□□□ -0.52
UBR4-208ENST00000459947 LMAN2LQ9H0V9 348 aa11.79□□□□□ -0.52
UBR4-208ENST00000459947 UBE4BO95155 1302 aa11.79□□□□□ -0.52
UBR4-208ENST00000459947 ZPBP2Q6X784 338 aa11.79□□□□□ -0.52
UBR4-208ENST00000459947 KCNK18Q7Z418 384 aa11.79□□□□□ -0.52
UBR4-208ENST00000459947 MRPL10Q7Z7H8 261 aaKnown RBP11.79□□□□□ -0.52
UBR4-208ENST00000459947 PPP1R16BQ96T49 567 aa11.79□□□□□ -0.52
UBR4-208ENST00000459947 TRIM6Q9C030 488 aaPredicted RBP11.79□□□□□ -0.52
UBR4-208ENST00000459947 ARHGAP28Q9P2N2 729 aa11.79□□□□□ -0.52
UBR4-208ENST00000459947 KCNH3Q9ULD8 1083 aa11.79□□□□□ -0.52
UBR4-208ENST00000459947 TSPAN1O60635 241 aa11.78□□□□□ -0.52
UBR4-208ENST00000459947 DEFB103AP81534 67 aa11.78□□□□□ -0.52
UBR4-208ENST00000459947 TGS1Q96RS0 853 aaKnown RBP11.78□□□□□ -0.52
UBR4-208ENST00000459947 RALGAPA2Q2PPJ7 1873 aa11.78□□□□□ -0.52
UBR4-208ENST00000459947 KIF20AO95235 890 aa11.78□□□□□ -0.52
UBR4-208ENST00000459947 NPTX2P47972 431 aa11.78□□□□□ -0.52
UBR4-208ENST00000459947 NCKAP1LP55160 1127 aa11.78□□□□□ -0.52
UBR4-208ENST00000459947 PEX3P56589 373 aa11.78□□□□□ -0.52
UBR4-208ENST00000459947 GRIN1Q05586 938 aa11.78□□□□□ -0.52
UBR4-208ENST00000459947 PPP2R2DQ66LE6 453 aa11.78□□□□□ -0.52
UBR4-208ENST00000459947 GLB1LQ6UWU2 654 aa11.78□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms