RNA–Protein interactions for RNA: ENST00000414419.6

RFFL-204, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

TSL 4

Gene RFFL, Length 559 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-204ENST00000414419 LRRC43Q8N309 656 aa12.44□□□□□ -0.42
RFFL-204ENST00000414419 IGSF22Q8N9C0 903 aa12.44□□□□□ -0.42
RFFL-204ENST00000414419 KLHL23Q8NBE8 558 aa12.44□□□□□ -0.42
RFFL-204ENST00000414419 PPP2R3CQ969Q6 453 aa12.44□□□□□ -0.42
RFFL-204ENST00000414419 PGBD4Q96DM1 585 aa12.44□□□□□ -0.42
RFFL-204ENST00000414419 CASD1Q96PB1 797 aa12.44□□□□□ -0.42
RFFL-204ENST00000414419 ASB2Q96Q27 587 aa12.44□□□□□ -0.42
RFFL-204ENST00000414419 TRAIPQ9BWF2 469 aa12.44□□□□□ -0.42
RFFL-204ENST00000414419 MRPL9Q9BYD2 267 aaKnown RBP12.44□□□□□ -0.42
RFFL-204ENST00000414419 POLR3FQ9H1D9 316 aaPredicted RBP12.44□□□□□ -0.42
RFFL-204ENST00000414419 FAM105AQ9NUU6 356 aa12.44□□□□□ -0.42
RFFL-204ENST00000414419 KIAA1024Q9UPX6 916 aa12.44□□□□□ -0.42
RFFL-204ENST00000414419 MYH11P35749 1972 aa12.43□□□□□ -0.42
RFFL-204ENST00000414419 ATG2AQ2TAZ0 1938 aa12.43□□□□□ -0.42
RFFL-204ENST00000414419 LRRIQ4A6NIV6 560 aa12.43□□□□□ -0.42
RFFL-204ENST00000414419 ITGB1P05556 798 aa12.43□□□□□ -0.42
RFFL-204ENST00000414419 AXLP30530 894 aa12.43□□□□□ -0.42
RFFL-204ENST00000414419 ATP2C1P98194 919 aaPredicted RBP12.43□□□□□ -0.42
RFFL-204ENST00000414419 CAPSQ13938 189 aa12.43□□□□□ -0.42
RFFL-204ENST00000414419 ZRSR1Q15695 479 aaKnown RBP12.43□□□□□ -0.42
RFFL-204ENST00000414419 GLB1LQ6UWU2 654 aa12.43□□□□□ -0.42
RFFL-204ENST00000414419 EP400NLQ6ZTU2 488 aa12.43□□□□□ -0.42
RFFL-204ENST00000414419 BRAPQ7Z569 592 aa12.43□□□□□ -0.42
RFFL-204ENST00000414419 ZNF598Q86UK7 904 aaKnown RBP12.43□□□□□ -0.42
RFFL-204ENST00000414419 ZBTB8OSQ8IWT0 167 aa12.43□□□□□ -0.42
RFFL-204ENST00000414419 COLGALT1Q8NBJ5 622 aa12.43□□□□□ -0.42
RFFL-204ENST00000414419 HELQQ8TDG4 1101 aa12.43□□□□□ -0.42
RFFL-204ENST00000414419 ASAP3Q8TDY4 903 aa12.43□□□□□ -0.42
RFFL-204ENST00000414419 RSPH1Q8WYR4 309 aa12.43□□□□□ -0.42
RFFL-204ENST00000414419 COL25A1Q9BXS0 654 aaPredicted RBP12.43□□□□□ -0.42
RFFL-204ENST00000414419 BHMT2Q9H2M3 363 aa12.43□□□□□ -0.42
RFFL-204ENST00000414419 MINDY3Q9H8M7 445 aa12.43□□□□□ -0.42
RFFL-204ENST00000414419 DDX19AQ9NUU7 478 aaKnown RBP12.43□□□□□ -0.42
RFFL-204ENST00000414419 DNM3Q9UQ16 869 aa12.43□□□□□ -0.42
RFFL-204ENST00000414419 VWA3AA6NCI4 1184 aa12.42□□□□□ -0.42
RFFL-204ENST00000414419 K7ELQ4 463 aaPredicted RBP12.42□□□□□ -0.42
RFFL-204ENST00000414419 NCK2O43639 380 aa12.42□□□□□ -0.42
RFFL-204ENST00000414419 ZNF623O75123 536 aa12.42□□□□□ -0.42
RFFL-204ENST00000414419 BMP15O95972 392 aa12.42□□□□□ -0.42
RFFL-204ENST00000414419 CYP11B2P19099 503 aa12.42□□□□□ -0.42
RFFL-204ENST00000414419 GLRA2P23416 452 aa12.42□□□□□ -0.42
RFFL-204ENST00000414419 TFF2Q03403 129 aa12.42□□□□□ -0.42
RFFL-204ENST00000414419 UBE3AQ05086 875 aa12.42□□□□□ -0.42
RFFL-204ENST00000414419 PPP2R5AQ15172 486 aa12.42□□□□□ -0.42
RFFL-204ENST00000414419 LONRF3Q496Y0 759 aa12.42□□□□□ -0.42
RFFL-204ENST00000414419 TCEAL5Q5H9L2 206 aa12.42□□□□□ -0.42
RFFL-204ENST00000414419 CLLU1OSQ5K130 101 aa12.42□□□□□ -0.42
RFFL-204ENST00000414419 ARL6IP4Q66PJ3 421 aaKnown RBP12.42□□□□□ -0.42
RFFL-204ENST00000414419 NOTUMQ6P988 496 aa12.42□□□□□ -0.42
RFFL-204ENST00000414419 IFNLR1Q8IU57 520 aaPredicted RBP12.42□□□□□ -0.42
RFFL-204ENST00000414419 CNNM3Q8NE01 707 aa12.42□□□□□ -0.42
RFFL-204ENST00000414419 SPPL3Q8TCT6 385 aa12.42□□□□□ -0.42
RFFL-204ENST00000414419 MICAL1Q8TDZ2 1067 aa12.42□□□□□ -0.42
RFFL-204ENST00000414419 POF1BQ8WVV4 589 aa12.42□□□□□ -0.42
RFFL-204ENST00000414419 LPPQ93052 612 aa12.42□□□□□ -0.42
RFFL-204ENST00000414419 INTS4Q96HW7 963 aaKnown RBP12.42□□□□□ -0.42
RFFL-204ENST00000414419 CDK5RAP3Q96JB5 506 aa12.42□□□□□ -0.42
RFFL-204ENST00000414419 IFT74Q96LB3 600 aa12.42□□□□□ -0.42
RFFL-204ENST00000414419 ZNF558Q96NG5 402 aa12.42□□□□□ -0.42
RFFL-204ENST00000414419 NFKBIZQ9BYH8 718 aa12.42□□□□□ -0.42
RFFL-204ENST00000414419 TRIM6Q9C030 488 aaPredicted RBP12.42□□□□□ -0.42
RFFL-204ENST00000414419 CWH43Q9H720 699 aa12.42□□□□□ -0.42
RFFL-204ENST00000414419 GPRC5CQ9NQ84 441 aa12.42□□□□□ -0.42
RFFL-204ENST00000414419 PUF60Q9UHX1 559 aaKnown RBP12.42□□□□□ -0.42
RFFL-204ENST00000414419 INPP5FQ9Y2H2 1132 aa12.42□□□□□ -0.42
RFFL-204ENST00000414419 PCDHB2Q9Y5E7 798 aa12.42□□□□□ -0.42
RFFL-204ENST00000414419 TDRD15B5MCY1 1934 aaKnown RBP12.41□□□□□ -0.42
RFFL-204ENST00000414419 CUL9Q8IWT3 2517 aa12.41□□□□□ -0.42
RFFL-204ENST00000414419 CARNS1A5YM72 827 aa12.41□□□□□ -0.42
RFFL-204ENST00000414419 PP2D1A8MPX8 630 aa12.41□□□□□ -0.42
RFFL-204ENST00000414419 FGF18O76093 207 aa12.41□□□□□ -0.42
RFFL-204ENST00000414419 ATF7P17544 494 aaPredicted RBP12.41□□□□□ -0.42
RFFL-204ENST00000414419 CDC25AP30304 524 aa12.41□□□□□ -0.42
RFFL-204ENST00000414419 PPM1AP35813 382 aa12.41□□□□□ -0.42
RFFL-204ENST00000414419 ALDH7A1P49419 539 aaKnown RBP12.41□□□□□ -0.42
RFFL-204ENST00000414419 KRT17Q04695 432 aa12.41□□□□□ -0.42
RFFL-204ENST00000414419 RNASELQ05823 741 aaKnown RBP12.41□□□□□ -0.42
RFFL-204ENST00000414419 MBTD1Q05BQ5 628 aa12.41□□□□□ -0.42
RFFL-204ENST00000414419 IL17AQ16552 155 aa12.41□□□□□ -0.42
RFFL-204ENST00000414419 ECM1Q16610 540 aa12.41□□□□□ -0.42
RFFL-204ENST00000414419 TMEM132AQ24JP5 1023 aa12.41□□□□□ -0.42
RFFL-204ENST00000414419 KCNT2Q6UVM3 1135 aa12.41□□□□□ -0.42
RFFL-204ENST00000414419 LRRC55Q6ZSA7 311 aa12.41□□□□□ -0.42
RFFL-204ENST00000414419 DEPTORQ8TB45 409 aa12.41□□□□□ -0.42
RFFL-204ENST00000414419 URGCPQ8TCY9 931 aa12.41□□□□□ -0.42
RFFL-204ENST00000414419 CCDC51Q96ER9 411 aa12.41□□□□□ -0.42
RFFL-204ENST00000414419 CPB2Q96IY4 423 aa12.41□□□□□ -0.42
RFFL-204ENST00000414419 NT5C3AQ9H0P0 336 aa12.41□□□□□ -0.42
RFFL-204ENST00000414419 C2orf40Q9H1Z8 148 aa12.41□□□□□ -0.42
RFFL-204ENST00000414419 UBE2ZQ9H832 354 aaPredicted RBP12.41□□□□□ -0.42
RFFL-204ENST00000414419 FOXD4L1Q9NU39 408 aa12.41□□□□□ -0.42
RFFL-204ENST00000414419 RNF19AQ9NV58 838 aa12.41□□□□□ -0.42
RFFL-204ENST00000414419 HCSTQ9UBK5 93 aa12.41□□□□□ -0.42
RFFL-204ENST00000414419 CNTNAP2Q9UHC6 1331 aa12.4□□□□□ -0.42
RFFL-204ENST00000414419 E9PMD0 336 aa12.4□□□□□ -0.42
RFFL-204ENST00000414419 TSPAN1O60635 241 aa12.4□□□□□ -0.42
RFFL-204ENST00000414419 EYA4O95677 639 aa12.4□□□□□ -0.42
RFFL-204ENST00000414419 HSP90AA1P07900 732 aaKnown RBP12.4□□□□□ -0.42
RFFL-204ENST00000414419 ITGA4P13612 1032 aa12.4□□□□□ -0.42
RFFL-204ENST00000414419 SYT1P21579 422 aa12.4□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms