RNA–Protein interactions for RNA: ENST00000400301.5

USP48-204, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 4,309 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-204ENST00000400301 TBK1Q9UHD2 729 aa19.92■□□□□ 0.78
USP48-204ENST00000400301 SCAF8Q9UPN6 1271 aaKnown RBP19.92■□□□□ 0.78
USP48-204ENST00000400301 CD2APQ9Y5K6 639 aa19.92■□□□□ 0.78
USP48-204ENST00000400301 PFASO15067 1338 aa19.92■□□□□ 0.78
USP48-204ENST00000400301 PDE2AO00408 941 aaPredicted RBP19.92■□□□□ 0.78
USP48-204ENST00000400301 MAP2K7O14733 419 aa19.92■□□□□ 0.78
USP48-204ENST00000400301 STAM2O75886 525 aa19.92■□□□□ 0.78
USP48-204ENST00000400301 MYCNP04198 464 aaPredicted RBP19.92■□□□□ 0.78
USP48-204ENST00000400301 ZKSCAN8Q15776 578 aaPredicted RBP19.92■□□□□ 0.78
USP48-204ENST00000400301 HADHQ16836 314 aaKnown RBP19.92■□□□□ 0.78
USP48-204ENST00000400301 C6orf118Q5T5N4 469 aa19.92■□□□□ 0.78
USP48-204ENST00000400301 OR2W6PQ8NHA6 318 aa19.92■□□□□ 0.78
USP48-204ENST00000400301 TPCN2Q8NHX9 752 aa19.92■□□□□ 0.78
USP48-204ENST00000400301 AGBL1Q96MI9 1066 aa19.92■□□□□ 0.78
USP48-204ENST00000400301 HEMGNQ9BXL5 484 aa19.92■□□□□ 0.78
USP48-204ENST00000400301 KCND2Q9NZV8 630 aa19.92■□□□□ 0.78
USP48-204ENST00000400301 CHRNA3P32297 505 aa19.91■□□□□ 0.78
USP48-204ENST00000400301 TFAMQ00059 246 aaKnown RBP19.91■□□□□ 0.78
USP48-204ENST00000400301 LRRC55Q6ZSA7 311 aa19.91■□□□□ 0.78
USP48-204ENST00000400301 COL23A1Q86Y22 540 aaPredicted RBP19.91■□□□□ 0.78
USP48-204ENST00000400301 GMCL1Q96IK5 515 aa19.91■□□□□ 0.78
USP48-204ENST00000400301 MSTO1Q9BUK6 570 aa19.91■□□□□ 0.78
USP48-204ENST00000400301 TMEM39BQ9GZU3 492 aa19.91■□□□□ 0.78
USP48-204ENST00000400301 KLHL14Q9P2G3 628 aa19.91■□□□□ 0.78
USP48-204ENST00000400301 GOLGA8SH3BPF8 625 aa19.91■□□□□ 0.78
USP48-204ENST00000400301 FAM160B1Q5W0V3 765 aa19.91■□□□□ 0.78
USP48-204ENST00000400301 PASD1Q8IV76 773 aa19.91■□□□□ 0.78
USP48-204ENST00000400301 PAF1Q8N7H5 531 aa19.91■□□□□ 0.78
USP48-204ENST00000400301 MXRA8Q9BRK3 442 aa19.91■□□□□ 0.78
USP48-204ENST00000400301 ADAM22Q9P0K1 906 aa19.91■□□□□ 0.78
USP48-204ENST00000400301 FAM187AA6NFU0 413 aa19.91■□□□□ 0.78
USP48-204ENST00000400301 FAM86B1E9PN63 330 aa19.91■□□□□ 0.78
USP48-204ENST00000400301 FAM86B2P0C5J1 330 aa19.91■□□□□ 0.78
USP48-204ENST00000400301 PMS2P54278 862 aa19.91■□□□□ 0.78
USP48-204ENST00000400301 PPP2R2AP63151 447 aa19.91■□□□□ 0.78
USP48-204ENST00000400301 MUM1L1Q5H9M0 696 aa19.91■□□□□ 0.78
USP48-204ENST00000400301 FYB2Q5VWT5 728 aa19.91■□□□□ 0.78
USP48-204ENST00000400301 CCDC137Q6PK04 289 aaKnown RBP19.91■□□□□ 0.78
USP48-204ENST00000400301 GADL1Q6ZQY3 521 aa19.91■□□□□ 0.78
USP48-204ENST00000400301 ZBTB33Q86T24 672 aa19.91■□□□□ 0.78
USP48-204ENST00000400301 FBXL13Q8NEE6 735 aa19.91■□□□□ 0.78
USP48-204ENST00000400301 CELF4Q9BZC1 486 aaKnown RBP19.91■□□□□ 0.78
USP48-204ENST00000400301 INO80B-WBP1J3KQ70 363 aa19.9■□□□□ 0.78
USP48-204ENST00000400301 ADCY2Q08462 1091 aa19.9■□□□□ 0.78
USP48-204ENST00000400301 APTXQ7Z2E3 356 aaKnown RBP19.9■□□□□ 0.78
USP48-204ENST00000400301 CREG2Q8IUH2 290 aa19.9■□□□□ 0.78
USP48-204ENST00000400301 CERS5Q8N5B7 392 aa19.9■□□□□ 0.78
USP48-204ENST00000400301 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP19.9■□□□□ 0.781e-6■■■■■ 32.8
USP48-204ENST00000400301 RIT2Q99578 217 aa19.9■□□□□ 0.78
USP48-204ENST00000400301 INO80BQ9C086 356 aaPredicted RBP19.9■□□□□ 0.78
USP48-204ENST00000400301 PPP1R37O75864 691 aa19.9■□□□□ 0.78
USP48-204ENST00000400301 TMEM253P0C7T8 217 aa19.9■□□□□ 0.78
USP48-204ENST00000400301 MXRA7P84157 204 aa19.9■□□□□ 0.78
USP48-204ENST00000400301 P3H4Q92791 437 aa19.9■□□□□ 0.78
USP48-204ENST00000400301 C11orf70Q9BRQ4 267 aa19.9■□□□□ 0.78
USP48-204ENST00000400301 BCL9LQ86UU0 1499 aa19.9■□□□□ 0.78
USP48-204ENST00000400301 ZBTB22O15209 634 aa19.9■□□□□ 0.78
USP48-204ENST00000400301 EIF3HO15372 352 aaKnown RBP eCLIP19.9■□□□□ 0.781e-5■□□□□ 9.1
USP48-204ENST00000400301 LMNB2Q03252 620 aa19.9■□□□□ 0.78
USP48-204ENST00000400301 Q4G0T1 1027 aa19.9■□□□□ 0.78
USP48-204ENST00000400301 DNAJC24Q6P3W2 148 aa19.9■□□□□ 0.78
USP48-204ENST00000400301 ARMC9Q7Z3E5 817 aa19.9■□□□□ 0.78
USP48-204ENST00000400301 KCTD17Q8N5Z5 321 aa19.9■□□□□ 0.78
USP48-204ENST00000400301 NSUN6Q8TEA1 469 aaKnown RBP19.9■□□□□ 0.78
USP48-204ENST00000400301 DNAJC19Q96DA6 116 aa19.9■□□□□ 0.78
USP48-204ENST00000400301 ATP6V0A4Q9HBG4 840 aa19.9■□□□□ 0.78
USP48-204ENST00000400301 KCNQ5Q9NR82 932 aa19.9■□□□□ 0.78
USP48-204ENST00000400301 KCNH7Q9NS40 1196 aa19.9■□□□□ 0.78
USP48-204ENST00000400301 RASA3Q14644 834 aa19.9■□□□□ 0.78
USP48-204ENST00000400301 PALM2Q8IXS6 379 aa19.9■□□□□ 0.78
USP48-204ENST00000400301 CALR3Q96L12 384 aaKnown RBP19.9■□□□□ 0.78
USP48-204ENST00000400301 NXF1Q9UBU9 619 aaKnown RBP19.9■□□□□ 0.78
USP48-204ENST00000400301 PCDHA10Q9Y5I2 948 aa19.9■□□□□ 0.78
USP48-204ENST00000400301 KRT1P04264 644 aa19.89■□□□□ 0.78
USP48-204ENST00000400301 ARP10275 920 aa19.89■□□□□ 0.78
USP48-204ENST00000400301 RSBN1LQ6PCB5 846 aaPredicted RBP19.89■□□□□ 0.78
USP48-204ENST00000400301 NLRP14Q86W24 1093 aa19.89■□□□□ 0.78
USP48-204ENST00000400301 CASKIN2Q8WXE0 1202 aa19.89■□□□□ 0.78
USP48-204ENST00000400301 UNC45AQ9H3U1 944 aa19.89■□□□□ 0.78
USP48-204ENST00000400301 ZHX2Q9Y6X8 837 aa19.89■□□□□ 0.78
USP48-204ENST00000400301 C6orf163Q5TEZ5 329 aa19.89■□□□□ 0.77
USP48-204ENST00000400301 SUCLA2Q9P2R7 463 aaPredicted RBP19.89■□□□□ 0.77
USP48-204ENST00000400301 GMNCA6NCL1 334 aa19.89■□□□□ 0.77
USP48-204ENST00000400301 RTN2O75298 545 aa19.89■□□□□ 0.77
USP48-204ENST00000400301 IRX5P78411 483 aaPredicted RBP19.89■□□□□ 0.77
USP48-204ENST00000400301 CERKQ8TCT0 537 aa19.89■□□□□ 0.77
USP48-204ENST00000400301 ARL8AQ96BM9 186 aa19.89■□□□□ 0.77
USP48-204ENST00000400301 SHISA4Q96DD7 197 aa19.89■□□□□ 0.77
USP48-204ENST00000400301 ISCUQ9H1K1 167 aa19.89■□□□□ 0.77
USP48-204ENST00000400301 AIPL1Q9NZN9 384 aa19.89■□□□□ 0.77
USP48-204ENST00000400301 CHORDC1Q9UHD1 332 aaPredicted RBP19.89■□□□□ 0.77
USP48-204ENST00000400301 GLI1P08151 1106 aa19.88■□□□□ 0.77
USP48-204ENST00000400301 MMEP08473 750 aa19.88■□□□□ 0.77
USP48-204ENST00000400301 PLS3P13797 630 aa19.88■□□□□ 0.77
USP48-204ENST00000400301 HSPA1LP34931 641 aa19.88■□□□□ 0.77
USP48-204ENST00000400301 OSTNP61366 133 aa19.88■□□□□ 0.77
USP48-204ENST00000400301 AMPD2Q01433 879 aa19.88■□□□□ 0.77
USP48-204ENST00000400301 ZNF394Q53GI3 561 aa19.88■□□□□ 0.77
USP48-204ENST00000400301 TMEM270Q6UE05 265 aa19.88■□□□□ 0.77
USP48-204ENST00000400301 WNT8AQ9H1J5 351 aa19.88■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms