RNA–Protein interactions for RNA: ENST00000381753.8

LIMCH1-202, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,705 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-202ENST00000381753 AOX1Q06278 1338 aa9.88□□□□□ -0.83
LIMCH1-202ENST00000381753 PRKCZQ05513 592 aa9.88□□□□□ -0.83
LIMCH1-202ENST00000381753 MAP7Q14244 749 aa9.88□□□□□ -0.83
LIMCH1-202ENST00000381753 MAPRE1Q15691 268 aaKnown RBP9.88□□□□□ -0.83
LIMCH1-202ENST00000381753 FAM171A1Q5VUB5 890 aa9.88□□□□□ -0.83
LIMCH1-202ENST00000381753 DNAJC24Q6P3W2 148 aa9.88□□□□□ -0.83
LIMCH1-202ENST00000381753 TAS2R42Q7RTR8 314 aa9.88□□□□□ -0.83
LIMCH1-202ENST00000381753 SRBD1Q8N5C6 995 aaKnown RBP9.88□□□□□ -0.83
LIMCH1-202ENST00000381753 LARP4BQ92615 738 aaKnown RBP9.88□□□□□ -0.83
LIMCH1-202ENST00000381753 TMEM143Q96AN5 459 aa9.88□□□□□ -0.83
LIMCH1-202ENST00000381753 TMX3Q96JJ7 454 aa9.88□□□□□ -0.83
LIMCH1-202ENST00000381753 TRIM35Q9UPQ4 493 aa9.88□□□□□ -0.83
LIMCH1-202ENST00000381753 TRPV2Q9Y5S1 764 aa9.88□□□□□ -0.83
LIMCH1-202ENST00000381753 ERVK-10P10266 1014 aa9.87□□□□□ -0.83
LIMCH1-202ENST00000381753 DHPSP49366 369 aaPredicted RBP9.87□□□□□ -0.83
LIMCH1-202ENST00000381753 APBA1Q02410 837 aa9.87□□□□□ -0.83
LIMCH1-202ENST00000381753 DDR1Q08345 913 aa9.87□□□□□ -0.83
LIMCH1-202ENST00000381753 CUL1Q13616 776 aa9.87□□□□□ -0.83
LIMCH1-202ENST00000381753 E4F1Q66K89 784 aaPredicted RBP9.87□□□□□ -0.83
LIMCH1-202ENST00000381753 GADD45GIP1Q8TAE8 222 aaPredicted RBP9.87□□□□□ -0.83
LIMCH1-202ENST00000381753 U2AF1L4Q8WU68 220 aaKnown RBP9.87□□□□□ -0.83
LIMCH1-202ENST00000381753 DNAJB3Q8WWF6 145 aa9.87□□□□□ -0.83
LIMCH1-202ENST00000381753 FTHL17Q9BXU8 183 aa9.87□□□□□ -0.83
LIMCH1-202ENST00000381753 CAMSAP3Q9P1Y5 1249 aaPredicted RBP9.87□□□□□ -0.83
LIMCH1-202ENST00000381753 GLI2P10070 1586 aa9.87□□□□□ -0.83
LIMCH1-202ENST00000381753 ZNF197O14709 1029 aa9.87□□□□□ -0.83
LIMCH1-202ENST00000381753 PRPF4O43172 522 aaKnown RBP eCLIP9.87□□□□□ -0.83
LIMCH1-202ENST00000381753 KRT86O43790 486 aa9.87□□□□□ -0.83
LIMCH1-202ENST00000381753 RFC5P40937 340 aa9.87□□□□□ -0.83
LIMCH1-202ENST00000381753 CCDC184Q52MB2 194 aa9.87□□□□□ -0.83
LIMCH1-202ENST00000381753 RARS2Q5T160 578 aaKnown RBP9.87□□□□□ -0.83
LIMCH1-202ENST00000381753 KAZNQ674X7 775 aa9.87□□□□□ -0.83
LIMCH1-202ENST00000381753 FRA10AC1Q70Z53 315 aa9.87□□□□□ -0.83
LIMCH1-202ENST00000381753 DSG4Q86SJ6 1040 aa9.87□□□□□ -0.83
LIMCH1-202ENST00000381753 TDRD5Q8NAT2 981 aaKnown RBP9.87□□□□□ -0.83
LIMCH1-202ENST00000381753 VPS50Q96JG6 964 aa9.87□□□□□ -0.83
LIMCH1-202ENST00000381753 LLPHQ9BRT6 129 aaKnown RBP9.87□□□□□ -0.83
LIMCH1-202ENST00000381753 FSD1LQ9BXM9 530 aa9.87□□□□□ -0.83
LIMCH1-202ENST00000381753 VPS16Q9H269 839 aa9.87□□□□□ -0.83
LIMCH1-202ENST00000381753 BHMT2Q9H2M3 363 aa9.87□□□□□ -0.83
LIMCH1-202ENST00000381753 PRR12Q9ULL5 1215 aa9.87□□□□□ -0.83
LIMCH1-202ENST00000381753 SART1O43290 800 aaKnown RBP9.87□□□□□ -0.83
LIMCH1-202ENST00000381753 PARNO95453 639 aaKnown RBP9.87□□□□□ -0.83
LIMCH1-202ENST00000381753 THOP1P52888 689 aa9.87□□□□□ -0.83
LIMCH1-202ENST00000381753 CENPCQ03188 943 aa9.87□□□□□ -0.83
LIMCH1-202ENST00000381753 FAM186BQ8IYM0 893 aa9.87□□□□□ -0.83
LIMCH1-202ENST00000381753 KLRG1Q96E93 195 aa9.87□□□□□ -0.83
LIMCH1-202ENST00000381753 CORO1BQ9BR76 489 aa9.87□□□□□ -0.83
LIMCH1-202ENST00000381753 PUS7LQ9H0K6 701 aaKnown RBP9.87□□□□□ -0.83
LIMCH1-202ENST00000381753 SNX9Q9Y5X1 595 aa9.87□□□□□ -0.83
LIMCH1-202ENST00000381753 TNS2Q63HR2 1409 aa9.87□□□□□ -0.83
LIMCH1-202ENST00000381753 KANSL1LA0AUZ9 987 aa9.87□□□□□ -0.83
LIMCH1-202ENST00000381753 CREB3O43889 395 aa9.87□□□□□ -0.83
LIMCH1-202ENST00000381753 SRGAP2O75044 1071 aa9.87□□□□□ -0.83
LIMCH1-202ENST00000381753 LCP1P13796 627 aa9.87□□□□□ -0.83
LIMCH1-202ENST00000381753 SLC11A2P49281 568 aa9.87□□□□□ -0.83
LIMCH1-202ENST00000381753 ZNF296Q8WUU4 475 aaPredicted RBP9.87□□□□□ -0.83
LIMCH1-202ENST00000381753 MAIP1Q8WWC4 291 aa9.87□□□□□ -0.83
LIMCH1-202ENST00000381753 SUSD6Q92537 303 aa9.87□□□□□ -0.83
LIMCH1-202ENST00000381753 MCOLN1Q9GZU1 580 aa9.87□□□□□ -0.83
LIMCH1-202ENST00000381753 SLC39A2Q9NP94 309 aa9.87□□□□□ -0.83
LIMCH1-202ENST00000381753 ASAH2Q9NR71 780 aa9.87□□□□□ -0.83
LIMCH1-202ENST00000381753 NAGPAQ9UK23 515 aa9.87□□□□□ -0.83
LIMCH1-202ENST00000381753 GTF3C5Q9Y5Q8 519 aaPredicted RBP9.87□□□□□ -0.83
LIMCH1-202ENST00000381753 KIF2AO00139 706 aaPredicted RBP9.87□□□□□ -0.83
LIMCH1-202ENST00000381753 HSF2BPO75031 334 aa9.87□□□□□ -0.83
LIMCH1-202ENST00000381753 GLUD1P00367 558 aa9.87□□□□□ -0.83
LIMCH1-202ENST00000381753 PRR29P0C7W0 189 aa9.87□□□□□ -0.83
LIMCH1-202ENST00000381753 ATP6V1E1P36543 226 aa9.87□□□□□ -0.83
LIMCH1-202ENST00000381753 KYNUQ16719 465 aa9.87□□□□□ -0.83
LIMCH1-202ENST00000381753 UVSSAQ2YD98 709 aa9.87□□□□□ -0.83
LIMCH1-202ENST00000381753 PPP1R18Q6NYC8 613 aa9.87□□□□□ -0.83
LIMCH1-202ENST00000381753 IFNL1Q8IU54 200 aa9.87□□□□□ -0.83
LIMCH1-202ENST00000381753 TAB3Q8N5C8 712 aaPredicted RBP9.87□□□□□ -0.83
LIMCH1-202ENST00000381753 TEKT4Q8WW24 435 aa9.87□□□□□ -0.83
LIMCH1-202ENST00000381753 IFT81Q8WYA0 676 aa9.87□□□□□ -0.83
LIMCH1-202ENST00000381753 ZDHHC15Q96MV8 337 aa9.87□□□□□ -0.83
LIMCH1-202ENST00000381753 CPVLQ9H3G5 476 aa9.87□□□□□ -0.83
LIMCH1-202ENST00000381753 NGRNQ9NPE2 291 aaKnown RBP9.87□□□□□ -0.83
LIMCH1-202ENST00000381753 UXTQ9UBK9 157 aaPredicted RBP9.87□□□□□ -0.83
LIMCH1-202ENST00000381753 ASIC3Q9UHC3 531 aa9.87□□□□□ -0.83
LIMCH1-202ENST00000381753 AGAP1Q9UPQ3 857 aa9.87□□□□□ -0.83
LIMCH1-202ENST00000381753 M0QYV0 167 aa9.86□□□□□ -0.83
LIMCH1-202ENST00000381753 SLC9A3R1O14745 358 aaPredicted RBP9.86□□□□□ -0.83
LIMCH1-202ENST00000381753 IL1RL1Q01638 556 aa9.86□□□□□ -0.83
LIMCH1-202ENST00000381753 NFRKBQ6P4R8 1299 aa9.86□□□□□ -0.83
LIMCH1-202ENST00000381753 UBXN4Q92575 508 aa9.86□□□□□ -0.83
LIMCH1-202ENST00000381753 ATP2A3Q93084 1043 aa9.86□□□□□ -0.83
LIMCH1-202ENST00000381753 SENP1Q9P0U3 644 aa9.86□□□□□ -0.83
LIMCH1-202ENST00000381753 H3BRB1 525 aa9.86□□□□□ -0.83
LIMCH1-202ENST00000381753 ZNF263O14978 683 aa9.86□□□□□ -0.83
LIMCH1-202ENST00000381753 GAS2O43903 313 aaKnown RBP9.86□□□□□ -0.83
LIMCH1-202ENST00000381753 CRHR2Q13324 411 aa9.86□□□□□ -0.83
LIMCH1-202ENST00000381753 TAF1BQ53T94 588 aaPredicted RBP9.86□□□□□ -0.83
LIMCH1-202ENST00000381753 SFMBT2Q5VUG0 894 aa9.86□□□□□ -0.83
LIMCH1-202ENST00000381753 LRRC69Q6ZNQ3 347 aa9.86□□□□□ -0.83
LIMCH1-202ENST00000381753 SMG7Q92540 1137 aaKnown RBP9.86□□□□□ -0.83
LIMCH1-202ENST00000381753 FBXO32Q969P5 355 aa9.86□□□□□ -0.83
LIMCH1-202ENST00000381753 CGRRF1Q99675 332 aa9.86□□□□□ -0.83
LIMCH1-202ENST00000381753 LXNQ9BS40 222 aa9.86□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 118.1 ms