RNA–Protein interactions for RNA: ENST00000369733.7

COL17A1-202, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL17A1, Length 5,488 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-202ENST00000369733 GPS1Q13098 491 aa17■□□□□ 0.31
COL17A1-202ENST00000369733 LONRF1Q17RB8 773 aa17■□□□□ 0.31
COL17A1-202ENST00000369733 PPP1R18Q6NYC8 613 aa17■□□□□ 0.31
COL17A1-202ENST00000369733 RFX8Q6ZV50 586 aa17■□□□□ 0.31
COL17A1-202ENST00000369733 USP38Q8NB14 1042 aa17■□□□□ 0.31
COL17A1-202ENST00000369733 GIMAP8Q8ND71 665 aaPredicted RBP17■□□□□ 0.31
COL17A1-202ENST00000369733 CCDC195A0A1B0GUA6 201 aa16.99■□□□□ 0.31
COL17A1-202ENST00000369733 ZNF233A6NK53 670 aa16.99■□□□□ 0.31
COL17A1-202ENST00000369733 STAT4Q14765 748 aa16.99■□□□□ 0.31
COL17A1-202ENST00000369733 OR6B2Q6IFH4 312 aa16.99■□□□□ 0.31
COL17A1-202ENST00000369733 DDX42Q86XP3 938 aaKnown RBP eCLIP16.99■□□□□ 0.31
COL17A1-202ENST00000369733 CCDC138Q96M89 665 aa16.99■□□□□ 0.31
COL17A1-202ENST00000369733 ABCD1P33897 745 aa16.99■□□□□ 0.31
COL17A1-202ENST00000369733 NAB2Q15742 525 aa16.99■□□□□ 0.31
COL17A1-202ENST00000369733 CYB5D1Q6P9G0 228 aa16.99■□□□□ 0.31
COL17A1-202ENST00000369733 LONP2Q86WA8 852 aa16.99■□□□□ 0.31
COL17A1-202ENST00000369733 PASD1Q8IV76 773 aa16.99■□□□□ 0.31
COL17A1-202ENST00000369733 ISCA1Q9BUE6 129 aa16.99■□□□□ 0.31
COL17A1-202ENST00000369733 MID2Q9UJV3 735 aa16.99■□□□□ 0.31
COL17A1-202ENST00000369733 PITPNM2Q9BZ72 1349 aa16.99■□□□□ 0.31
COL17A1-202ENST00000369733 ORC4O43929 436 aa16.99■□□□□ 0.31
COL17A1-202ENST00000369733 PHF2O75151 1096 aa16.99■□□□□ 0.31
COL17A1-202ENST00000369733 SLC35G2Q8TBE7 412 aa16.99■□□□□ 0.31
COL17A1-202ENST00000369733 BAG5Q9UL15 447 aa16.99■□□□□ 0.31
COL17A1-202ENST00000369733 STAT3P40763 770 aa16.99■□□□□ 0.31
COL17A1-202ENST00000369733 CASP2P42575 452 aa16.99■□□□□ 0.31
COL17A1-202ENST00000369733 KRT39Q6A163 491 aa16.99■□□□□ 0.31
COL17A1-202ENST00000369733 AGGF1Q8N302 714 aaeCLIP16.99■□□□□ 0.316e-6■■■■□ 21.7
COL17A1-202ENST00000369733 C11orf70Q9BRQ4 267 aa16.99■□□□□ 0.31
COL17A1-202ENST00000369733 AK9Q5TCS8 1911 aa16.99■□□□□ 0.31
COL17A1-202ENST00000369733 VAMP7P51809 220 aa16.98■□□□□ 0.31
COL17A1-202ENST00000369733 NOP14P78316 857 aaKnown RBP16.98■□□□□ 0.31
COL17A1-202ENST00000369733 PTPAQ15257 358 aa16.98■□□□□ 0.31
COL17A1-202ENST00000369733 FSCBQ5H9T9 825 aa16.98■□□□□ 0.31
COL17A1-202ENST00000369733 FAM160B1Q5W0V3 765 aa16.98■□□□□ 0.31
COL17A1-202ENST00000369733 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP16.98■□□□□ 0.31
COL17A1-202ENST00000369733 EHD2Q9NZN4 543 aa16.98■□□□□ 0.31
COL17A1-202ENST00000369733 ARL4AP40617 200 aa16.98■□□□□ 0.31
COL17A1-202ENST00000369733 IL1RL1Q01638 556 aa16.98■□□□□ 0.31
COL17A1-202ENST00000369733 SCARA5Q6ZMJ2 495 aa16.98■□□□□ 0.31
COL17A1-202ENST00000369733 KIF2BQ8N4N8 673 aa16.98■□□□□ 0.31
COL17A1-202ENST00000369733 TTC13Q8NBP0 860 aa16.98■□□□□ 0.31
COL17A1-202ENST00000369733 KLC2Q9H0B6 622 aa16.98■□□□□ 0.31
COL17A1-202ENST00000369733 RFX1P22670 979 aa16.98■□□□□ 0.31
COL17A1-202ENST00000369733 SLC30A9Q6PML9 568 aa16.98■□□□□ 0.31
COL17A1-202ENST00000369733 AGPAT1Q99943 283 aa16.98■□□□□ 0.31
COL17A1-202ENST00000369733 NOD2Q9HC29 1040 aa16.98■□□□□ 0.31
COL17A1-202ENST00000369733 WDR64B1ANS9 1081 aa16.98■□□□□ 0.31
COL17A1-202ENST00000369733 TRIM49P0CI25 452 aa16.98■□□□□ 0.31
COL17A1-202ENST00000369733 TRIM49CP0CI26 452 aa16.98■□□□□ 0.31
COL17A1-202ENST00000369733 SRGAP2BP0DMP2 458 aa16.98■□□□□ 0.31
COL17A1-202ENST00000369733 KIF22Q14807 665 aa16.98■□□□□ 0.31
COL17A1-202ENST00000369733 TRMT10CQ7L0Y3 403 aaKnown RBP16.98■□□□□ 0.31
COL17A1-202ENST00000369733 TEX9Q8N6V9 391 aa16.98■□□□□ 0.31
COL17A1-202ENST00000369733 GALCP54803 685 aa16.97■□□□□ 0.31
COL17A1-202ENST00000369733 RAB44Q7Z6P3 723 aaPredicted RBP16.97■□□□□ 0.31
COL17A1-202ENST00000369733 SGSM3Q96HU1 749 aa16.97■□□□□ 0.31
COL17A1-202ENST00000369733 UPF3AQ9H1J1 476 aaKnown RBP16.97■□□□□ 0.31
COL17A1-202ENST00000369733 CCDC68Q9H2F9 335 aa16.97■□□□□ 0.31
COL17A1-202ENST00000369733 TRABDQ9H4I3 376 aa16.97■□□□□ 0.31
COL17A1-202ENST00000369733 SLC38A10Q9HBR0 1119 aa16.97■□□□□ 0.31
COL17A1-202ENST00000369733 IPO11Q9UI26 975 aaKnown RBP16.97■□□□□ 0.31
COL17A1-202ENST00000369733 HSD17B3P37058 310 aa16.97■□□□□ 0.31
COL17A1-202ENST00000369733 KLC1Q07866 573 aa16.97■□□□□ 0.31
COL17A1-202ENST00000369733 ZBTB33Q86T24 672 aa16.97■□□□□ 0.31
COL17A1-202ENST00000369733 MARCH10Q8NA82 808 aaPredicted RBP16.97■□□□□ 0.31
COL17A1-202ENST00000369733 MYCBPAPQ8TBZ2 947 aa16.97■□□□□ 0.31
COL17A1-202ENST00000369733 CEP95Q96GE4 821 aa16.97■□□□□ 0.31
COL17A1-202ENST00000369733 PRELPP51888 382 aa16.97■□□□□ 0.31
COL17A1-202ENST00000369733 PRKG1Q13976 671 aa16.97■□□□□ 0.31
COL17A1-202ENST00000369733 FAM96AQ9H5X1 160 aa16.97■□□□□ 0.31
COL17A1-202ENST00000369733 AS3MTQ9HBK9 375 aa16.97■□□□□ 0.31
COL17A1-202ENST00000369733 EEF1DP29692 281 aaKnown RBP16.97■□□□□ 0.31
COL17A1-202ENST00000369733 TFDP1Q14186 410 aa16.97■□□□□ 0.31
COL17A1-202ENST00000369733 MIS18BP1Q6P0N0 1132 aa16.97■□□□□ 0.31
COL17A1-202ENST00000369733 ARL8AQ96BM9 186 aa16.97■□□□□ 0.31
COL17A1-202ENST00000369733 FAM20AQ96MK3 541 aa16.97■□□□□ 0.31
COL17A1-202ENST00000369733 GNGT2O14610 69 aa16.97■□□□□ 0.31
COL17A1-202ENST00000369733 HNRNPCL1O60812 293 aaKnown RBP16.97■□□□□ 0.31
COL17A1-202ENST00000369733 ANXA13P27216 316 aa16.97■□□□□ 0.31
COL17A1-202ENST00000369733 PGM1P36871 562 aa16.97■□□□□ 0.31
COL17A1-202ENST00000369733 KPNA2P52292 529 aaKnown RBP16.97■□□□□ 0.31
COL17A1-202ENST00000369733 FAM149B1Q96BN6 582 aa16.97■□□□□ 0.31
COL17A1-202ENST00000369733 STAMBPL1Q96FJ0 436 aa16.97■□□□□ 0.31
COL17A1-202ENST00000369733 DNAJC7Q99615 494 aa16.97■□□□□ 0.31
COL17A1-202ENST00000369733 DHX36Q9H2U1 1008 aaKnown RBP16.97■□□□□ 0.31
COL17A1-202ENST00000369733 HPSEQ9Y251 543 aa16.97■□□□□ 0.31
COL17A1-202ENST00000369733 USP17L10C9JJH3 530 aa16.96■□□□□ 0.31
COL17A1-202ENST00000369733 CD44P16070 742 aaKnown RBP16.96■□□□□ 0.31
COL17A1-202ENST00000369733 PPM1NQ8N819 430 aa16.96■□□□□ 0.31
COL17A1-202ENST00000369733 ATP11CQ8NB49 1132 aa16.96■□□□□ 0.31
COL17A1-202ENST00000369733 ICA1LQ8NDH6 482 aa16.96■□□□□ 0.31
COL17A1-202ENST00000369733 CASKIN2Q8WXE0 1202 aa16.96■□□□□ 0.31
COL17A1-202ENST00000369733 NPHP3-ACAD11A0A0J9YXS1 232 aa16.96■□□□□ 0.31
COL17A1-202ENST00000369733 MTERF2Q49AM1 385 aa16.96■□□□□ 0.31
COL17A1-202ENST00000369733 PADI6Q6TGC4 694 aa16.96■□□□□ 0.31
COL17A1-202ENST00000369733 ANO5Q75V66 913 aa16.96■□□□□ 0.31
COL17A1-202ENST00000369733 MYO3AQ8NEV4 1616 aa16.96■□□□□ 0.31
COL17A1-202ENST00000369733 IGF2BP3O00425 579 aaKnown RBP eCLIP16.96■□□□□ 0.31
COL17A1-202ENST00000369733 UCHL3P15374 230 aa16.96■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms