RNA–Protein interactions for RNA: ENST00000298281.8

PCF11-201, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PCF11, Length 7,677 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-201ENST00000298281 TRAF7Q6Q0C0 670 aa12.82□□□□□ -0.36
PCF11-201ENST00000298281 PPP1R13BQ96KQ4 1090 aa12.82□□□□□ -0.36
PCF11-201ENST00000298281 TRPC7Q9HCX4 862 aa12.82□□□□□ -0.36
PCF11-201ENST00000298281 MLH3Q9UHC1 1453 aa12.82□□□□□ -0.36
PCF11-201ENST00000298281 DAB1O75553 588 aa12.81□□□□□ -0.36
PCF11-201ENST00000298281 NFX1Q12986 1120 aaKnown RBP12.81□□□□□ -0.36
PCF11-201ENST00000298281 IFT88Q13099 833 aa12.81□□□□□ -0.36
PCF11-201ENST00000298281 EIF2B5Q13144 721 aaKnown RBP12.81□□□□□ -0.36
PCF11-201ENST00000298281 PASD1Q8IV76 773 aa12.81□□□□□ -0.36
PCF11-201ENST00000298281 FAM161BQ96MY7 647 aa12.81□□□□□ -0.36
PCF11-201ENST00000298281 ARHGAP17Q68EM7 881 aa12.81□□□□□ -0.36
PCF11-201ENST00000298281 ITPRIPL1Q6GPH6 555 aa12.81□□□□□ -0.36
PCF11-201ENST00000298281 SCARA5Q6ZMJ2 495 aa12.81□□□□□ -0.36
PCF11-201ENST00000298281 TBCKQ8TEA7 893 aa12.81□□□□□ -0.36
PCF11-201ENST00000298281 TSSK1BQ9BXA7 367 aa12.81□□□□□ -0.36
PCF11-201ENST00000298281 TRIM33Q9UPN9 1127 aa12.81□□□□□ -0.36
PCF11-201ENST00000298281 CCDC188H7C350 402 aa12.81□□□□□ -0.36
PCF11-201ENST00000298281 PEX1O43933 1283 aa12.81□□□□□ -0.36
PCF11-201ENST00000298281 TJP3O95049 919 aa12.81□□□□□ -0.36
PCF11-201ENST00000298281 GNAT1P11488 350 aa12.81□□□□□ -0.36
PCF11-201ENST00000298281 SDE2Q6IQ49 451 aa12.81□□□□□ -0.36
PCF11-201ENST00000298281 ACAD11Q709F0 780 aa12.81□□□□□ -0.36
PCF11-201ENST00000298281 ANKRD13CQ8N6S4 541 aa12.81□□□□□ -0.36
PCF11-201ENST00000298281 PLEKHA8Q96JA3 519 aa12.81□□□□□ -0.36
PCF11-201ENST00000298281 REXO4Q9GZR2 422 aaKnown RBP12.81□□□□□ -0.36
PCF11-201ENST00000298281 GPBP1L1Q9HC44 474 aaPredicted RBP12.81□□□□□ -0.36
PCF11-201ENST00000298281 FAM32AQ9Y421 112 aaKnown RBP12.81□□□□□ -0.36
PCF11-201ENST00000298281 YEATS2Q9ULM3 1422 aa12.81□□□□□ -0.36
PCF11-201ENST00000298281 ATP7AQ04656 1500 aa12.81□□□□□ -0.36
PCF11-201ENST00000298281 SYNCRIPO60506 623 aaKnown RBP12.81□□□□□ -0.36
PCF11-201ENST00000298281 LRRN2O75325 713 aa12.81□□□□□ -0.36
PCF11-201ENST00000298281 KRT37O76014 449 aa12.81□□□□□ -0.36
PCF11-201ENST00000298281 CCNE1P24864 410 aa12.81□□□□□ -0.36
PCF11-201ENST00000298281 IREB2P48200 963 aaKnown RBP12.81□□□□□ -0.36
PCF11-201ENST00000298281 CCT5P48643 541 aa12.81□□□□□ -0.36
PCF11-201ENST00000298281 SYDE2Q5VT97 1194 aa12.81□□□□□ -0.36
PCF11-201ENST00000298281 TTC13Q8NBP0 860 aa12.81□□□□□ -0.36
PCF11-201ENST00000298281 K7ERI5 159 aa12.81□□□□□ -0.36
PCF11-201ENST00000298281 PHKA1P46020 1223 aa12.81□□□□□ -0.36
PCF11-201ENST00000298281 ANKS6Q68DC2 871 aa12.81□□□□□ -0.36
PCF11-201ENST00000298281 RFWD2Q8NHY2 731 aa12.81□□□□□ -0.36
PCF11-201ENST00000298281 DYDC2Q96IM9 177 aa12.81□□□□□ -0.36
PCF11-201ENST00000298281 PTPRTO14522 1441 aa12.81□□□□□ -0.36
PCF11-201ENST00000298281 PTPRKQ15262 1439 aa12.81□□□□□ -0.36
PCF11-201ENST00000298281 IFNAR1P17181 557 aa12.81□□□□□ -0.36
PCF11-201ENST00000298281 E2F5Q15329 346 aa12.81□□□□□ -0.36
PCF11-201ENST00000298281 PPP2R3CQ969Q6 453 aa12.81□□□□□ -0.36
PCF11-201ENST00000298281 MYLK2Q9H1R3 596 aa12.81□□□□□ -0.36
PCF11-201ENST00000298281 EMILIN3Q9NT22 766 aa12.81□□□□□ -0.36
PCF11-201ENST00000298281 NIPSNAP3AQ9UFN0 247 aaPredicted RBP12.81□□□□□ -0.36
PCF11-201ENST00000298281 PDXDC2PQ6P474 469 aa12.8□□□□□ -0.36
PCF11-201ENST00000298281 TAS2R42Q7RTR8 314 aa12.8□□□□□ -0.36
PCF11-201ENST00000298281 ST13P5Q8NFI4 369 aaPredicted RBP12.8□□□□□ -0.36
PCF11-201ENST00000298281 MAGEB5Q9BZ81 275 aa12.8□□□□□ -0.36
PCF11-201ENST00000298281 UBE2TQ9NPD8 197 aaPredicted RBP12.8□□□□□ -0.36
PCF11-201ENST00000298281 SLC25A24Q6NUK1 477 aa12.8□□□□□ -0.36
PCF11-201ENST00000298281 SREK1IP1Q8N9Q2 155 aaPredicted RBP12.8□□□□□ -0.36
PCF11-201ENST00000298281 PYROXD1Q8WU10 500 aa12.8□□□□□ -0.36
PCF11-201ENST00000298281 GREM2Q9H772 168 aa12.8□□□□□ -0.36
PCF11-201ENST00000298281 SOX13Q9UN79 622 aa12.8□□□□□ -0.36
PCF11-201ENST00000298281 RAB14P61106 215 aa12.8□□□□□ -0.36
PCF11-201ENST00000298281 NR1H3Q13133 447 aa12.8□□□□□ -0.36
PCF11-201ENST00000298281 IRAK1BP1Q5VVH5 260 aa12.8□□□□□ -0.36
PCF11-201ENST00000298281 GNL3Q9BVP2 549 aaKnown RBP eCLIP12.8□□□□□ -0.36
PCF11-201ENST00000298281 KLHL8Q9P2G9 620 aaPredicted RBP12.8□□□□□ -0.36
PCF11-201ENST00000298281 ZMYND8Q9ULU4 1186 aaPredicted RBP12.8□□□□□ -0.36
PCF11-201ENST00000298281 RNF103-CHMP3A0A140T963 221 aa12.8□□□□□ -0.36
PCF11-201ENST00000298281 PALM2-AKAP2B1ALY0 433 aaPredicted RBP12.8□□□□□ -0.36
PCF11-201ENST00000298281 TK2O00142 265 aa12.8□□□□□ -0.36
PCF11-201ENST00000298281 MAPK13O15264 365 aa12.8□□□□□ -0.36
PCF11-201ENST00000298281 MMP1P03956 469 aa12.8□□□□□ -0.36
PCF11-201ENST00000298281 HPCAP84074 193 aa12.8□□□□□ -0.36
PCF11-201ENST00000298281 DHX9Q08211 1270 aaKnown RBP12.8□□□□□ -0.36
PCF11-201ENST00000298281 CUL4AQ13619 759 aa12.8□□□□□ -0.36
PCF11-201ENST00000298281 LRRC31Q6UY01 552 aa12.8□□□□□ -0.36
PCF11-201ENST00000298281 FAM167AQ96KS9 214 aa12.8□□□□□ -0.36
PCF11-201ENST00000298281 OSBPL3Q9H4L5 887 aa12.8□□□□□ -0.36
PCF11-201ENST00000298281 TRIM48Q8IWZ4 208 aa12.8□□□□□ -0.36
PCF11-201ENST00000298281 RRAGDQ9NQL2 400 aaPredicted RBP12.8□□□□□ -0.36
PCF11-201ENST00000298281 KCTD16Q68DU8 428 aa12.8□□□□□ -0.36
PCF11-201ENST00000298281 OR6B2Q6IFH4 312 aa12.8□□□□□ -0.36
PCF11-201ENST00000298281 FAM196AQ6ZSG2 479 aa12.8□□□□□ -0.36
PCF11-201ENST00000298281 PANX2Q96RD6 677 aa12.8□□□□□ -0.36
PCF11-201ENST00000298281 SP110Q9HB58 689 aa12.8□□□□□ -0.36
PCF11-201ENST00000298281 SESN1Q9Y6P5 492 aa12.8□□□□□ -0.36
PCF11-201ENST00000298281 TARSL2A2RTX5 802 aaKnown RBP12.79□□□□□ -0.36
PCF11-201ENST00000298281 P4HA2O15460 535 aa12.79□□□□□ -0.36
PCF11-201ENST00000298281 CD58P19256 250 aa12.79□□□□□ -0.36
PCF11-201ENST00000298281 SYTL3Q4VX76 610 aa12.79□□□□□ -0.36
PCF11-201ENST00000298281 LRRC24Q50LG9 513 aa12.79□□□□□ -0.36
PCF11-201ENST00000298281 BTN2A1Q7KYR7 527 aa12.79□□□□□ -0.36
PCF11-201ENST00000298281 ZC3H18Q86VM9 953 aaKnown RBP12.79□□□□□ -0.36
PCF11-201ENST00000298281 FOXP4Q8IVH2 680 aaPredicted RBP12.79□□□□□ -0.36
PCF11-201ENST00000298281 ECT2Q9H8V3 914 aa12.79□□□□□ -0.36
PCF11-201ENST00000298281 F5H423 210 aaPredicted RBP12.79□□□□□ -0.36
PCF11-201ENST00000298281 PRPF3O43395 683 aaKnown RBP12.79□□□□□ -0.36
PCF11-201ENST00000298281 MTRF1O75570 445 aaKnown RBP12.79□□□□□ -0.36
PCF11-201ENST00000298281 ALDH1A1P00352 501 aa12.79□□□□□ -0.36
PCF11-201ENST00000298281 GSPT1P15170 499 aaKnown RBP12.79□□□□□ -0.36
PCF11-201ENST00000298281 SERPINB10P48595 397 aa12.79□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 55.4 ms