RNA–Protein interactions for RNA: ENST00000597136.1

TRIM28-207, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 1,552 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-207ENST00000597136 CLSTN2Q9H4D0 955 aa16.64■□□□□ 0.25
TRIM28-207ENST00000597136 NOC2LQ9Y3T9 749 aaKnown RBP16.64■□□□□ 0.25
TRIM28-207ENST00000597136 PPME1Q9Y570 386 aa16.64■□□□□ 0.25
TRIM28-207ENST00000597136 FNDC1Q4ZHG4 1894 aaPredicted RBP16.63■□□□□ 0.25
TRIM28-207ENST00000597136 A0A087WZ62 844 aa16.63■□□□□ 0.25
TRIM28-207ENST00000597136 DGAT1O75907 488 aa16.63■□□□□ 0.25
TRIM28-207ENST00000597136 PARNO95453 639 aaKnown RBP16.63■□□□□ 0.25
TRIM28-207ENST00000597136 CD52P31358 61 aa16.63■□□□□ 0.25
TRIM28-207ENST00000597136 DNM2P50570 870 aa16.63■□□□□ 0.25
TRIM28-207ENST00000597136 CAVIN1Q6NZI2 390 aaKnown RBP16.63■□□□□ 0.25
TRIM28-207ENST00000597136 RAD54LQ92698 747 aa16.63■□□□□ 0.25
TRIM28-207ENST00000597136 FDXACB1Q9BRP7 624 aaPredicted RBP16.63■□□□□ 0.25
TRIM28-207ENST00000597136 TMEM63CQ9P1W3 806 aa16.63■□□□□ 0.25
TRIM28-207ENST00000597136 CHD9Q3L8U1 2897 aa16.62■□□□□ 0.25
TRIM28-207ENST00000597136 M0QZ92 97 aa16.62■□□□□ 0.25
TRIM28-207ENST00000597136 SRGAP2CP0DJJ0 459 aa16.62■□□□□ 0.25
TRIM28-207ENST00000597136 CYP11B2P19099 503 aa16.62■□□□□ 0.25
TRIM28-207ENST00000597136 CRYBB1P53674 252 aaPredicted RBP16.62■□□□□ 0.25
TRIM28-207ENST00000597136 LAMTOR4Q0VGL1 99 aa16.62■□□□□ 0.25
TRIM28-207ENST00000597136 DHX8Q14562 1220 aaKnown RBP16.62■□□□□ 0.25
TRIM28-207ENST00000597136 CAMK4Q16566 473 aa16.62■□□□□ 0.25
TRIM28-207ENST00000597136 RINT1Q6NUQ1 792 aa16.62■□□□□ 0.25
TRIM28-207ENST00000597136 KANK3Q6NY19 840 aa16.62■□□□□ 0.25
TRIM28-207ENST00000597136 ELOA2Q8IYF1 753 aaPredicted RBP16.62■□□□□ 0.25
TRIM28-207ENST00000597136 TDHQ8IZJ6 230 aa16.62■□□□□ 0.25
TRIM28-207ENST00000597136 ASAP3Q8TDY4 903 aa16.62■□□□□ 0.25
TRIM28-207ENST00000597136 LARP4BQ92615 738 aaKnown RBP16.62■□□□□ 0.25
TRIM28-207ENST00000597136 PAGE5Q96GU1 130 aa16.62■□□□□ 0.25
TRIM28-207ENST00000597136 JPH2Q9BR39 696 aaPredicted RBP16.62■□□□□ 0.25
TRIM28-207ENST00000597136 RUSC1Q9BVN2 902 aa16.62■□□□□ 0.25
TRIM28-207ENST00000597136 NUP62CLQ9H1M0 184 aa16.62■□□□□ 0.25
TRIM28-207ENST00000597136 MAGEF1Q9HAY2 307 aa16.62■□□□□ 0.25
TRIM28-207ENST00000597136 ATP6V0A4Q9HBG4 840 aa16.62■□□□□ 0.25
TRIM28-207ENST00000597136 KBTBD4Q9NVX7 518 aa16.62■□□□□ 0.25
TRIM28-207ENST00000597136 NLRC5Q86WI3 1866 aa16.61■□□□□ 0.25
TRIM28-207ENST00000597136 RPLP2P05387 115 aaKnown RBP16.61■□□□□ 0.25
TRIM28-207ENST00000597136 SSBP05455 408 aaKnown RBP eCLIP16.61■□□□□ 0.25
TRIM28-207ENST00000597136 PLA2G4BP0C869 781 aa16.61■□□□□ 0.25
TRIM28-207ENST00000597136 FGFR4P22455 802 aa16.61■□□□□ 0.25
TRIM28-207ENST00000597136 ARL2P36404 184 aa16.61■□□□□ 0.25
TRIM28-207ENST00000597136 MCM6Q14566 821 aa16.61■□□□□ 0.25
TRIM28-207ENST00000597136 ARSHQ5FYA8 562 aa16.61■□□□□ 0.25
TRIM28-207ENST00000597136 CCDC183Q5T5S1 534 aa16.61■□□□□ 0.25
TRIM28-207ENST00000597136 RASIP1Q5U651 963 aa16.61■□□□□ 0.25
TRIM28-207ENST00000597136 CNKSR3Q6P9H4 555 aa16.61■□□□□ 0.25
TRIM28-207ENST00000597136 PSRC1Q6PGN9 363 aaPredicted RBP16.61■□□□□ 0.25
TRIM28-207ENST00000597136 C1orf186Q6ZWK4 172 aa16.61■□□□□ 0.25
TRIM28-207ENST00000597136 EXOC8Q8IYI6 725 aa16.61■□□□□ 0.25
TRIM28-207ENST00000597136 GRAMD1CQ8IYS0 662 aa16.61■□□□□ 0.25
TRIM28-207ENST00000597136 SYT2Q8N9I0 419 aaPredicted RBP16.61■□□□□ 0.25
TRIM28-207ENST00000597136 NLRP7Q8WX94 980 aa16.61■□□□□ 0.25
TRIM28-207ENST00000597136 HERVK_113Q902F9 699 aa16.61■□□□□ 0.25
TRIM28-207ENST00000597136 SYAP1Q96A49 352 aaPredicted RBP16.61■□□□□ 0.25
TRIM28-207ENST00000597136 NLRP4Q96MN2 994 aa16.61■□□□□ 0.25
TRIM28-207ENST00000597136 IFIH1Q9BYX4 1025 aaKnown RBP16.61■□□□□ 0.25
TRIM28-207ENST00000597136 PADI3Q9ULW8 664 aa16.61■□□□□ 0.25
TRIM28-207ENST00000597136 COL4A3BPQ9Y5P4 624 aa16.61■□□□□ 0.25
TRIM28-207ENST00000597136 NPHP3-ACAD11A0A0J9YXS1 232 aa16.6■□□□□ 0.25
TRIM28-207ENST00000597136 PFKMP08237 780 aa16.6■□□□□ 0.25
TRIM28-207ENST00000597136 GLRA2P23416 452 aa16.6■□□□□ 0.25
TRIM28-207ENST00000597136 AFMP43652 599 aa16.6■□□□□ 0.25
TRIM28-207ENST00000597136 SLC12A3P55017 1021 aa16.6■□□□□ 0.25
TRIM28-207ENST00000597136 RAD51AP2Q09MP3 1159 aa16.6■□□□□ 0.25
TRIM28-207ENST00000597136 FAM102BQ5T8I3 360 aa16.6■□□□□ 0.25
TRIM28-207ENST00000597136 FAM109BQ6ICB4 259 aaPredicted RBP16.6■□□□□ 0.25
TRIM28-207ENST00000597136 TSHZ1Q6ZSZ6 1077 aa16.6■□□□□ 0.25
TRIM28-207ENST00000597136 SV2BQ7L1I2 683 aa16.6■□□□□ 0.25
TRIM28-207ENST00000597136 RTN4RL1Q86UN2 441 aaPredicted RBP16.6■□□□□ 0.25
TRIM28-207ENST00000597136 FAM228AQ86W67 206 aa16.6■□□□□ 0.25
TRIM28-207ENST00000597136 TCP11Q8WWU5 503 aa16.6■□□□□ 0.25
TRIM28-207ENST00000597136 PSPC1Q8WXF1 523 aaKnown RBP16.6■□□□□ 0.25
TRIM28-207ENST00000597136 BSNDQ8WZ55 320 aa16.6■□□□□ 0.25
TRIM28-207ENST00000597136 STAMQ92783 540 aa16.6■□□□□ 0.25
TRIM28-207ENST00000597136 RNPC3Q96LT9 517 aaKnown RBP16.6■□□□□ 0.25
TRIM28-207ENST00000597136 POLR3FQ9H1D9 316 aaPredicted RBP16.6■□□□□ 0.25
TRIM28-207ENST00000597136 TNMDQ9H2S6 317 aa16.6■□□□□ 0.25
TRIM28-207ENST00000597136 IFT122Q9HBG6 1241 aa16.6■□□□□ 0.25
TRIM28-207ENST00000597136 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP16.6■□□□□ 0.25
TRIM28-207ENST00000597136 GRXCR1A8MXD5 290 aa16.6■□□□□ 0.25
TRIM28-207ENST00000597136 GAS2O43903 313 aaKnown RBP16.6■□□□□ 0.25
TRIM28-207ENST00000597136 DARSP14868 501 aaKnown RBP16.6■□□□□ 0.25
TRIM28-207ENST00000597136 EIF4BP23588 611 aaKnown RBP16.6■□□□□ 0.25
TRIM28-207ENST00000597136 NFX1Q12986 1120 aaKnown RBP16.6■□□□□ 0.25
TRIM28-207ENST00000597136 LIN28BQ6ZN17 250 aaKnown RBP eCLIP16.6■□□□□ 0.252e-9■□□□□ 9.3
TRIM28-207ENST00000597136 TMCO2Q7Z6W1 182 aaPredicted RBP16.6■□□□□ 0.25
TRIM28-207ENST00000597136 DAW1Q8N136 415 aa16.6■□□□□ 0.25
TRIM28-207ENST00000597136 SEPT8Q92599 483 aa16.6■□□□□ 0.25
TRIM28-207ENST00000597136 CCDC34Q96HJ3 373 aa16.6■□□□□ 0.25
TRIM28-207ENST00000597136 MINDY3Q9H8M7 445 aa16.6■□□□□ 0.25
TRIM28-207ENST00000597136 HOOK1Q9UJC3 728 aaKnown RBP16.6■□□□□ 0.25
TRIM28-207ENST00000597136 ST3GAL5Q9UNP4 418 aa16.6■□□□□ 0.25
TRIM28-207ENST00000597136 SQORQ9Y6N5 450 aa16.6■□□□□ 0.25
TRIM28-207ENST00000597136 CHD7Q9P2D1 2997 aa16.59■□□□□ 0.25
TRIM28-207ENST00000597136 KIAA1671Q9BY89 1806 aa16.59■□□□□ 0.25
TRIM28-207ENST00000597136 SFI1A8K8P3 1242 aa16.59■□□□□ 0.25
TRIM28-207ENST00000597136 ZBBXA8MT70 800 aa16.59■□□□□ 0.25
TRIM28-207ENST00000597136 RPS6KA5O75582 802 aa16.59■□□□□ 0.25
TRIM28-207ENST00000597136 DEFB103AP81534 67 aa16.59■□□□□ 0.25
TRIM28-207ENST00000597136 CACNB1Q02641 598 aaPredicted RBP16.59■□□□□ 0.25
TRIM28-207ENST00000597136 CAPSQ13938 189 aa16.59■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 85.9 ms