RNA–Protein interactions for RNA: ENST00000513352.1

NUP54-213, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 579 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-213ENST00000513352 ODF2LQ9ULJ1 636 aa16.56■□□□□ 0.24
NUP54-213ENST00000513352 SCN5AQ14524 2016 aa16.56■□□□□ 0.24
NUP54-213ENST00000513352 SIP14410 1827 aa16.56■□□□□ 0.24
NUP54-213ENST00000513352 A0A087WZ62 844 aa16.55■□□□□ 0.24
NUP54-213ENST00000513352 CHRNA1P02708 482 aa16.55■□□□□ 0.24
NUP54-213ENST00000513352 GHRP10912 638 aa16.55■□□□□ 0.24
NUP54-213ENST00000513352 PHKA2P46019 1235 aa16.55■□□□□ 0.24
NUP54-213ENST00000513352 PEX3P56589 373 aa16.55■□□□□ 0.24
NUP54-213ENST00000513352 MGAT3Q09327 533 aa16.55■□□□□ 0.24
NUP54-213ENST00000513352 MAPK7Q13164 816 aa16.55■□□□□ 0.24
NUP54-213ENST00000513352 SNW1Q13573 536 aaKnown RBP16.55■□□□□ 0.24
NUP54-213ENST00000513352 CAPSQ13938 189 aa16.55■□□□□ 0.24
NUP54-213ENST00000513352 KANK3Q6NY19 840 aa16.55■□□□□ 0.24
NUP54-213ENST00000513352 DAW1Q8N136 415 aa16.55■□□□□ 0.24
NUP54-213ENST00000513352 TMEM199Q8N511 208 aa16.55■□□□□ 0.24
NUP54-213ENST00000513352 MYCT1Q8N699 235 aa16.55■□□□□ 0.24
NUP54-213ENST00000513352 BSNDQ8WZ55 320 aa16.55■□□□□ 0.24
NUP54-213ENST00000513352 LBHD1Q9BQE6 289 aaPredicted RBP16.55■□□□□ 0.24
NUP54-213ENST00000513352 FDXACB1Q9BRP7 624 aaPredicted RBP16.55■□□□□ 0.24
NUP54-213ENST00000513352 GCOM2Q9BZD3 368 aaPredicted RBP16.55■□□□□ 0.24
NUP54-213ENST00000513352 TRIM9Q9C026 710 aa16.55■□□□□ 0.24
NUP54-213ENST00000513352 CDHR5Q9HBB8 845 aa16.55■□□□□ 0.24
NUP54-213ENST00000513352 HOOK1Q9UJC3 728 aaKnown RBP16.55■□□□□ 0.24
NUP54-213ENST00000513352 GPR32O75388 356 aa16.54■□□□□ 0.24
NUP54-213ENST00000513352 IQCF3P0C7M6 154 aa16.54■□□□□ 0.24
NUP54-213ENST00000513352 PRR29P0C7W0 189 aa16.54■□□□□ 0.24
NUP54-213ENST00000513352 PLS3P13797 630 aa16.54■□□□□ 0.24
NUP54-213ENST00000513352 ITGB8P26012 769 aa16.54■□□□□ 0.24
NUP54-213ENST00000513352 RGS19P49795 217 aa16.54■□□□□ 0.24
NUP54-213ENST00000513352 CRYBB1P53674 252 aaPredicted RBP16.54■□□□□ 0.24
NUP54-213ENST00000513352 CDC42EP1Q00587 391 aa16.54■□□□□ 0.24
NUP54-213ENST00000513352 CUL4BQ13620 913 aa16.54■□□□□ 0.24
NUP54-213ENST00000513352 FAM26DQ5JW98 314 aa16.54■□□□□ 0.24
NUP54-213ENST00000513352 ODR4Q5SWX8 454 aa16.54■□□□□ 0.24
NUP54-213ENST00000513352 DEFB128Q7Z7B8 93 aa16.54■□□□□ 0.24
NUP54-213ENST00000513352 ZNF410Q86VK4 478 aa16.54■□□□□ 0.24
NUP54-213ENST00000513352 ZBTB8OSQ8IWT0 167 aa16.54■□□□□ 0.24
NUP54-213ENST00000513352 CCDC65Q8IXS2 484 aa16.54■□□□□ 0.24
NUP54-213ENST00000513352 ZNF710Q8N1W2 664 aa16.54■□□□□ 0.24
NUP54-213ENST00000513352 BADQ92934 168 aa16.54■□□□□ 0.24
NUP54-213ENST00000513352 ADAMTS10Q9H324 1103 aa16.54■□□□□ 0.24
NUP54-213ENST00000513352 PARVGQ9HBI0 331 aa16.54■□□□□ 0.24
NUP54-213ENST00000513352 KMT5AQ9NQR1 393 aa16.54■□□□□ 0.24
NUP54-213ENST00000513352 PANK4Q9NVE7 773 aa16.54■□□□□ 0.24
NUP54-213ENST00000513352 LARSQ9P2J5 1176 aaKnown RBP16.54■□□□□ 0.24
NUP54-213ENST00000513352 LTBP2Q14767 1821 aa16.54■□□□□ 0.24
NUP54-213ENST00000513352 SLC16A4O15374 487 aa16.53■□□□□ 0.24
NUP54-213ENST00000513352 GTPBP6O43824 516 aaPredicted RBP16.53■□□□□ 0.24
NUP54-213ENST00000513352 CSDE1O75534 798 aaKnown RBP16.53■□□□□ 0.24
NUP54-213ENST00000513352 NAMPTP43490 491 aa16.53■□□□□ 0.24
NUP54-213ENST00000513352 MLLT1Q03111 559 aaPredicted RBP16.53■□□□□ 0.24
NUP54-213ENST00000513352 POSTNQ15063 836 aa16.53■□□□□ 0.24
NUP54-213ENST00000513352 TRAF7Q6Q0C0 670 aa16.53■□□□□ 0.24
NUP54-213ENST00000513352 SFR1Q86XK3 245 aa16.53■□□□□ 0.24
NUP54-213ENST00000513352 DNAJC19Q96DA6 116 aa16.53■□□□□ 0.24
NUP54-213ENST00000513352 TIGD1Q96MW7 591 aa16.53■□□□□ 0.24
NUP54-213ENST00000513352 C7orf25Q9BPX7 421 aa16.53■□□□□ 0.24
NUP54-213ENST00000513352 KIFC3Q9BVG8 833 aa16.53■□□□□ 0.24
NUP54-213ENST00000513352 TBC1D7Q9P0N9 293 aa16.53■□□□□ 0.24
NUP54-213ENST00000513352 RBAK-RBAKDNI3L0D1 243 aa16.52■□□□□ 0.24
NUP54-213ENST00000513352 INO80B-WBP1J3KQ70 363 aa16.52■□□□□ 0.24
NUP54-213ENST00000513352 K7ENM7 598 aa16.52■□□□□ 0.24
NUP54-213ENST00000513352 PARNO95453 639 aaKnown RBP16.52■□□□□ 0.24
NUP54-213ENST00000513352 CSF2RAP15509 400 aa16.52■□□□□ 0.24
NUP54-213ENST00000513352 GAP43P17677 238 aa16.52■□□□□ 0.24
NUP54-213ENST00000513352 FGFR4P22455 802 aa16.52■□□□□ 0.24
NUP54-213ENST00000513352 NPTX2P47972 431 aa16.52■□□□□ 0.24
NUP54-213ENST00000513352 SMTNP53814 917 aa16.52■□□□□ 0.24
NUP54-213ENST00000513352 MDM2Q00987 491 aaPredicted RBP16.52■□□□□ 0.24
NUP54-213ENST00000513352 FPGSQ05932 587 aa16.52■□□□□ 0.24
NUP54-213ENST00000513352 COASYQ13057 564 aa16.52■□□□□ 0.24
NUP54-213ENST00000513352 PAK2Q13177 524 aa16.52■□□□□ 0.24
NUP54-213ENST00000513352 PNOCQ13519 176 aa16.52■□□□□ 0.24
NUP54-213ENST00000513352 TMEM132AQ24JP5 1023 aa16.52■□□□□ 0.24
NUP54-213ENST00000513352 HERC4Q5GLZ8 1057 aaPredicted RBP16.52■□□□□ 0.24
NUP54-213ENST00000513352 FBXO47Q5MNV8 452 aa16.52■□□□□ 0.24
NUP54-213ENST00000513352 MFSD5Q6N075 450 aa16.52■□□□□ 0.24
NUP54-213ENST00000513352 CCDC47Q96A33 483 aaKnown RBP16.52■□□□□ 0.24
NUP54-213ENST00000513352 INO80BQ9C086 356 aaPredicted RBP16.52■□□□□ 0.24
NUP54-213ENST00000513352 C2orf40Q9H1Z8 148 aa16.52■□□□□ 0.24
NUP54-213ENST00000513352 C17orf75Q9HAS0 396 aa16.52■□□□□ 0.24
NUP54-213ENST00000513352 EXOC1Q9NV70 894 aa16.52■□□□□ 0.24
NUP54-213ENST00000513352 NBNO60934 754 aa16.51■□□□□ 0.23
NUP54-213ENST00000513352 RPS6KA5O75582 802 aa16.51■□□□□ 0.23
NUP54-213ENST00000513352 ERLIN2O94905 339 aa16.51■□□□□ 0.23
NUP54-213ENST00000513352 MBD3O95983 291 aa16.51■□□□□ 0.23
NUP54-213ENST00000513352 DARSP14868 501 aaKnown RBP16.51■□□□□ 0.23
NUP54-213ENST00000513352 SFPQP23246 707 aaKnown RBP eCLIP16.51■□□□□ 0.23
NUP54-213ENST00000513352 EIF4BP23588 611 aaKnown RBP16.51■□□□□ 0.23
NUP54-213ENST00000513352 RFC2P35250 354 aa16.51■□□□□ 0.23
NUP54-213ENST00000513352 NFX1Q12986 1120 aaKnown RBP16.51■□□□□ 0.23
NUP54-213ENST00000513352 PPIGQ13427 754 aaKnown RBP eCLIP16.51■□□□□ 0.23
NUP54-213ENST00000513352 LPIN1Q14693 890 aa16.51■□□□□ 0.23
NUP54-213ENST00000513352 MBTPS1Q14703 1052 aa16.51■□□□□ 0.23
NUP54-213ENST00000513352 TSHZ1Q6ZSZ6 1077 aa16.51■□□□□ 0.23
NUP54-213ENST00000513352 UNC13DQ70J99 1090 aa16.51■□□□□ 0.23
NUP54-213ENST00000513352 CATSPER4Q7RTX7 472 aa16.51■□□□□ 0.23
NUP54-213ENST00000513352 SRGAP1Q7Z6B7 1085 aa16.51■□□□□ 0.23
NUP54-213ENST00000513352 FAM178BQ8IXR5 827 aa16.51■□□□□ 0.23
NUP54-213ENST00000513352 GPT2Q8TD30 523 aa16.51■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 66.7 ms