RNA–Protein interactions for RNA: ENST00000450966.5

USP40-208, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USP40, Length 5,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-208ENST00000450966 RNF103-CHMP3A0A140T963 221 aa14.16□□□□□ -0.14
USP40-208ENST00000450966 SRGAP2O75044 1071 aa14.16□□□□□ -0.14
USP40-208ENST00000450966 DDAH1O94760 285 aa14.16□□□□□ -0.14
USP40-208ENST00000450966 DDHD2O94830 711 aa14.16□□□□□ -0.14
USP40-208ENST00000450966 MMP10P09238 476 aa14.16□□□□□ -0.14
USP40-208ENST00000450966 TMOD1P28289 359 aa14.16□□□□□ -0.14
USP40-208ENST00000450966 HOXD10P28358 340 aa14.16□□□□□ -0.14
USP40-208ENST00000450966 RGS2P41220 211 aa14.16□□□□□ -0.14
USP40-208ENST00000450966 PPIDQ08752 370 aaKnown RBP14.16□□□□□ -0.14
USP40-208ENST00000450966 RAB20Q9NX57 234 aa14.16□□□□□ -0.14
USP40-208ENST00000450966 RPAP1Q9BWH6 1393 aaPredicted RBP14.16□□□□□ -0.14
USP40-208ENST00000450966 TMEM191CA6NGB0 347 aa14.16□□□□□ -0.14
USP40-208ENST00000450966 TCP11X1B4DZS4 312 aa14.16□□□□□ -0.14
USP40-208ENST00000450966 TCP10L2B9ZVM9 353 aa14.16□□□□□ -0.14
USP40-208ENST00000450966 ASNA1O43681 348 aa14.16□□□□□ -0.14
USP40-208ENST00000450966 FTCDO95954 541 aa14.16□□□□□ -0.14
USP40-208ENST00000450966 TMEM191BP0C7N4 346 aa14.16□□□□□ -0.14
USP40-208ENST00000450966 SLC39A14Q15043 492 aa14.16□□□□□ -0.14
USP40-208ENST00000450966 ADCK5Q3MIX3 580 aa14.16□□□□□ -0.14
USP40-208ENST00000450966 CDR2LQ86X02 465 aaPredicted RBP14.16□□□□□ -0.14
USP40-208ENST00000450966 PROCA1Q8NCQ7 364 aaPredicted RBP14.16□□□□□ -0.14
USP40-208ENST00000450966 CAAP1Q9H8G2 361 aa14.16□□□□□ -0.14
USP40-208ENST00000450966 MRGBPQ9NV56 204 aa14.16□□□□□ -0.14
USP40-208ENST00000450966 ABT1Q9ULW3 272 aaKnown RBP14.16□□□□□ -0.14
USP40-208ENST00000450966 ATF5Q9Y2D1 282 aaPredicted RBP14.16□□□□□ -0.14
USP40-208ENST00000450966 WDR91A4D1P6 747 aa14.16□□□□□ -0.14
USP40-208ENST00000450966 POTEFA5A3E0 1075 aa14.16□□□□□ -0.14
USP40-208ENST00000450966 PRDM1O75626 825 aa14.16□□□□□ -0.14
USP40-208ENST00000450966 CHN1P15882 459 aa14.16□□□□□ -0.14
USP40-208ENST00000450966 RASGRF1Q13972 1273 aa14.16□□□□□ -0.14
USP40-208ENST00000450966 CCDC153Q494R4 210 aa14.16□□□□□ -0.14
USP40-208ENST00000450966 WDR93Q6P2C0 686 aa14.16□□□□□ -0.14
USP40-208ENST00000450966 CASC4Q6P4E1 433 aa14.16□□□□□ -0.14
USP40-208ENST00000450966 CDH24Q86UP0 819 aa14.16□□□□□ -0.14
USP40-208ENST00000450966 KIF2BQ8N4N8 673 aa14.16□□□□□ -0.14
USP40-208ENST00000450966 RBBP8NLQ8NC74 664 aaPredicted RBP14.16□□□□□ -0.14
USP40-208ENST00000450966 SLC16A10Q8TF71 515 aa14.16□□□□□ -0.14
USP40-208ENST00000450966 RIN2Q8WYP3 895 aaPredicted RBP14.16□□□□□ -0.14
USP40-208ENST00000450966 CDHR1Q96JP9 859 aa14.16□□□□□ -0.14
USP40-208ENST00000450966 PRMT1Q99873 361 aaKnown RBP14.16□□□□□ -0.14
USP40-208ENST00000450966 PTPN22Q9Y2R2 807 aa14.16□□□□□ -0.14
USP40-208ENST00000450966 ABCB4P21439 1286 aa14.16□□□□□ -0.14
USP40-208ENST00000450966 GSTT1P30711 240 aa14.16□□□□□ -0.14
USP40-208ENST00000450966 CCNHP51946 323 aaPredicted RBP14.16□□□□□ -0.14
USP40-208ENST00000450966 DOK7Q18PE1 504 aa14.16□□□□□ -0.14
USP40-208ENST00000450966 HERC4Q5GLZ8 1057 aaPredicted RBP14.16□□□□□ -0.14
USP40-208ENST00000450966 PAGR1Q9BTK6 254 aa14.16□□□□□ -0.14
USP40-208ENST00000450966 EIF4ENIF1Q9NRA8 985 aaKnown RBP14.16□□□□□ -0.14
USP40-208ENST00000450966 L1RE1Q9UN81 338 aa14.16□□□□□ -0.14
USP40-208ENST00000450966 H3BQF6 201 aa14.15□□□□□ -0.14
USP40-208ENST00000450966 IFNB1P01574 187 aa14.15□□□□□ -0.14
USP40-208ENST00000450966 POTEIP0CG38 1075 aa14.15□□□□□ -0.14
USP40-208ENST00000450966 ATP1A3P13637 1013 aa14.15□□□□□ -0.14
USP40-208ENST00000450966 CBX3Q13185 183 aa14.15□□□□□ -0.14
USP40-208ENST00000450966 APOBEC3FQ8IUX4 373 aaKnown RBP14.15□□□□□ -0.14
USP40-208ENST00000450966 ZBTB8OSQ8IWT0 167 aa14.15□□□□□ -0.14
USP40-208ENST00000450966 SLFN12Q8IYM2 578 aa14.15□□□□□ -0.14
USP40-208ENST00000450966 SSH3Q8TE77 659 aa14.15□□□□□ -0.14
USP40-208ENST00000450966 FRMD4AQ9P2Q2 1039 aaPredicted RBP14.15□□□□□ -0.14
USP40-208ENST00000450966 LAMC1P11047 1609 aa14.15□□□□□ -0.14
USP40-208ENST00000450966 CLPTM1O96005 669 aa14.15□□□□□ -0.14
USP40-208ENST00000450966 SLC12A2P55011 1212 aa14.15□□□□□ -0.14
USP40-208ENST00000450966 CAV1Q03135 178 aa14.15□□□□□ -0.14
USP40-208ENST00000450966 GPR141Q7Z602 305 aa14.15□□□□□ -0.14
USP40-208ENST00000450966 DDX39AO00148 427 aaKnown RBP14.15□□□□□ -0.14
USP40-208ENST00000450966 ATP9AO75110 1047 aa14.15□□□□□ -0.14
USP40-208ENST00000450966 S100A9P06702 114 aaKnown RBP14.15□□□□□ -0.14
USP40-208ENST00000450966 POLR2FP61218 127 aaKnown RBP14.15□□□□□ -0.14
USP40-208ENST00000450966 CYP4F22Q6NT55 531 aa14.15□□□□□ -0.14
USP40-208ENST00000450966 MYCT1Q8N699 235 aa14.15□□□□□ -0.14
USP40-208ENST00000450966 MTA3Q9BTC8 594 aa14.15□□□□□ -0.14
USP40-208ENST00000450966 NRBP2Q9NSY0 501 aa14.15□□□□□ -0.14
USP40-208ENST00000450966 CFBP00751 764 aa14.15□□□□□ -0.14
USP40-208ENST00000450966 IMPDH2P12268 514 aa14.15□□□□□ -0.14
USP40-208ENST00000450966 COPB2P35606 906 aa14.15□□□□□ -0.14
USP40-208ENST00000450966 IL1RL1Q01638 556 aa14.15□□□□□ -0.14
USP40-208ENST00000450966 MYBPC2Q14324 1141 aa14.15□□□□□ -0.14
USP40-208ENST00000450966 CALCRLQ16602 461 aa14.15□□□□□ -0.14
USP40-208ENST00000450966 MID2Q9UJV3 735 aa14.15□□□□□ -0.14
USP40-208ENST00000450966 ARHGEF37A1IGU5 675 aa14.14□□□□□ -0.15
USP40-208ENST00000450966 EXOC3O60645 756 aa14.14□□□□□ -0.15
USP40-208ENST00000450966 KRT38O76015 456 aa14.14□□□□□ -0.15
USP40-208ENST00000450966 ZCCHC18P0CG32 403 aa14.14□□□□□ -0.15
USP40-208ENST00000450966 FUKQ8N0W3 1084 aa14.14□□□□□ -0.15
USP40-208ENST00000450966 REXO1Q8N1G1 1221 aaKnown RBP14.14□□□□□ -0.15
USP40-208ENST00000450966 CD209Q9NNX6 404 aa14.14□□□□□ -0.15
USP40-208ENST00000450966 KIF11P52732 1056 aa14.14□□□□□ -0.15
USP40-208ENST00000450966 KRT31Q15323 416 aa14.14□□□□□ -0.15
USP40-208ENST00000450966 ERFEQ4G0M1 354 aa14.14□□□□□ -0.15
USP40-208ENST00000450966 DPP9Q86TI2 863 aa14.14□□□□□ -0.15
USP40-208ENST00000450966 ABHD10Q9NUJ1 306 aa14.14□□□□□ -0.15
USP40-208ENST00000450966 PSEN1P49768 467 aa14.14□□□□□ -0.15
USP40-208ENST00000450966 TRIP10Q15642 601 aa14.14□□□□□ -0.15
USP40-208ENST00000450966 DCUN1D2Q6PH85 259 aa14.14□□□□□ -0.15
USP40-208ENST00000450966 BTNL9Q6UXG8 535 aa14.14□□□□□ -0.15
USP40-208ENST00000450966 CATSPER3Q86XQ3 398 aa14.14□□□□□ -0.15
USP40-208ENST00000450966 ZFRQ96KR1 1074 aaKnown RBP14.14□□□□□ -0.15
USP40-208ENST00000450966 SLITRK6Q9H5Y7 841 aa14.14□□□□□ -0.15
USP40-208ENST00000450966 FBXL5Q9UKA1 691 aa14.14□□□□□ -0.15
USP40-208ENST00000450966 MAN1B1Q9UKM7 699 aa14.14□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms