RNA–Protein interactions for RNA: ENST00000340477.9

SYNE4-202, Transcript of spectrin repeat containing nuclear envelope family member 4, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNE4, Length 1,004 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE4-202ENST00000340477 NCBP1Q09161 790 aaKnown RBP21.3■■□□□ 1
SYNE4-202ENST00000340477 GRIN2CQ14957 1233 aa21.3■■□□□ 1
SYNE4-202ENST00000340477 CABP7Q86V35 215 aa21.3■■□□□ 1
SYNE4-202ENST00000340477 TGS1Q96RS0 853 aaKnown RBP21.3■■□□□ 1
SYNE4-202ENST00000340477 CHST12Q9NRB3 414 aa21.3■■□□□ 1
SYNE4-202ENST00000340477 CLIC4Q9Y696 253 aa21.3■■□□□ 1
SYNE4-202ENST00000340477 ADGRA3Q8IWK6 1321 aa21.29■■□□□ 1
SYNE4-202ENST00000340477 LCHNA4D1U4 455 aa21.29■■□□□ 1
SYNE4-202ENST00000340477 LINC01553A4QN01 128 aa21.29■■□□□ 1
SYNE4-202ENST00000340477 RBAK-RBAKDNI3L0D1 243 aa21.29■■□□□ 1
SYNE4-202ENST00000340477 ERLIN2O94905 339 aa21.29■■□□□ 1
SYNE4-202ENST00000340477 EYA4O95677 639 aa21.29■■□□□ 1
SYNE4-202ENST00000340477 CYP11B2P19099 503 aa21.29■■□□□ 1
SYNE4-202ENST00000340477 FGFR4P22455 802 aa21.29■■□□□ 1
SYNE4-202ENST00000340477 TXLNAP40222 546 aa21.29■■□□□ 1
SYNE4-202ENST00000340477 PCBP1Q15365 356 aaKnown RBP eCLIP21.29■■□□□ 1
SYNE4-202ENST00000340477 ECM1Q16610 540 aa21.29■■□□□ 1
SYNE4-202ENST00000340477 MAEAQ7L5Y9 396 aa21.29■■□□□ 1
SYNE4-202ENST00000340477 RTN4RL1Q86UN2 441 aaPredicted RBP21.29■■□□□ 1
SYNE4-202ENST00000340477 SP7Q8TDD2 431 aaPredicted RBP21.29■■□□□ 1
SYNE4-202ENST00000340477 MYLIPQ8WY64 445 aa21.29■■□□□ 1
SYNE4-202ENST00000340477 ARNTL2Q8WYA1 636 aa21.29■■□□□ 1
SYNE4-202ENST00000340477 SAMD11Q96NU1 681 aa21.29■■□□□ 1
SYNE4-202ENST00000340477 PRDM12Q9H4Q4 367 aa21.29■■□□□ 1
SYNE4-202ENST00000340477 PIN4Q9Y237 131 aaKnown RBP21.29■■□□□ 1
SYNE4-202ENST00000340477 STXBP5LQ9Y2K9 1186 aa21.29■■□□□ 1
SYNE4-202ENST00000340477 NLRC5Q86WI3 1866 aa21.28■■□□□ 1
SYNE4-202ENST00000340477 HOXA2O43364 376 aa21.28■■□□□ 1
SYNE4-202ENST00000340477 MGEA5O60502 916 aa21.28■■□□□ 1
SYNE4-202ENST00000340477 CSDE1O75534 798 aaKnown RBP21.28■■□□□ 1
SYNE4-202ENST00000340477 ZSCAN22P10073 491 aaPredicted RBP21.28■■□□□ 1
SYNE4-202ENST00000340477 ARL2P36404 184 aa21.28■■□□□ 1
SYNE4-202ENST00000340477 POU5F1BQ06416 359 aa21.28■■□□□ 1
SYNE4-202ENST00000340477 DSC3Q14574 896 aa21.28■■□□□ 1
SYNE4-202ENST00000340477 PPP2R5AQ15172 486 aa21.28■■□□□ 1
SYNE4-202ENST00000340477 STK38Q15208 465 aa21.28■■□□□ 1
SYNE4-202ENST00000340477 FOXD4L5Q5VV16 416 aaPredicted RBP21.28■■□□□ 1
SYNE4-202ENST00000340477 TWF2Q6IBS0 349 aaKnown RBP21.28■■□□□ 1
SYNE4-202ENST00000340477 FAM173BQ6P4H8 233 aa21.28■■□□□ 1
SYNE4-202ENST00000340477 ZBTB8OSQ8IWT0 167 aa21.28■■□□□ 1
SYNE4-202ENST00000340477 FIBCD1Q8N539 461 aa21.28■■□□□ 1
SYNE4-202ENST00000340477 ASAP3Q8TDY4 903 aa21.28■■□□□ 1
SYNE4-202ENST00000340477 FOXD4L4Q8WXT5 416 aaPredicted RBP21.28■■□□□ 1
SYNE4-202ENST00000340477 MMTAG2Q9BU76 263 aaKnown RBP21.28■■□□□ 1
SYNE4-202ENST00000340477 IFT122Q9HBG6 1241 aa21.28■■□□□ 1
SYNE4-202ENST00000340477 RWDD3Q9Y3V2 267 aa21.28■■□□□ 1
SYNE4-202ENST00000340477 MYO9BQ13459 2157 aa21.28■■□□□ 1
SYNE4-202ENST00000340477 RALGAPA2Q2PPJ7 1873 aa21.28■■□□□ 1
SYNE4-202ENST00000340477 LRRIQ4A6NIV6 560 aa21.27■■□□□ 1
SYNE4-202ENST00000340477 C9IYK1 514 aa21.27■■□□□ 1
SYNE4-202ENST00000340477 E9PMD0 336 aa21.27■■□□□ 1
SYNE4-202ENST00000340477 INO80B-WBP1J3KQ70 363 aa21.27■■□□□ 1
SYNE4-202ENST00000340477 F13A1P00488 732 aa21.27■■□□□ 1
SYNE4-202ENST00000340477 SSBP05455 408 aaKnown RBP eCLIP21.27■■□□□ 1
SYNE4-202ENST00000340477 SKIP12755 728 aa21.27■■□□□ 1
SYNE4-202ENST00000340477 CAPSQ13938 189 aa21.27■■□□□ 1
SYNE4-202ENST00000340477 BTG3Q14201 252 aaPredicted RBP21.27■■□□□ 1
SYNE4-202ENST00000340477 HYIQ5T013 277 aa21.27■■□□□ 1
SYNE4-202ENST00000340477 KIFAP3Q92845 792 aa21.27■■□□□ 1
SYNE4-202ENST00000340477 IFT74Q96LB3 600 aa21.27■■□□□ 1
SYNE4-202ENST00000340477 ELAC1Q9H777 363 aaKnown RBP21.27■■□□□ 1
SYNE4-202ENST00000340477 CERS4Q9HA82 394 aa21.27■■□□□ 1
SYNE4-202ENST00000340477 TMEM161AQ9NX61 479 aa21.27■■□□□ 1
SYNE4-202ENST00000340477 DGKIO75912 1065 aa21.26■□□□□ 0.99
SYNE4-202ENST00000340477 GLRA2P23416 452 aa21.26■□□□□ 0.99
SYNE4-202ENST00000340477 MARCKSP29966 332 aaPredicted RBP21.26■□□□□ 0.99
SYNE4-202ENST00000340477 RAB27AP51159 221 aa21.26■□□□□ 0.99
SYNE4-202ENST00000340477 PTENP60484 403 aa21.26■□□□□ 0.99
SYNE4-202ENST00000340477 PTPAQ15257 358 aa21.26■□□□□ 0.99
SYNE4-202ENST00000340477 CMTR2Q8IYT2 770 aaKnown RBP21.26■□□□□ 0.99
SYNE4-202ENST00000340477 USP28Q96RU2 1077 aa21.26■□□□□ 0.99
SYNE4-202ENST00000340477 NFKBIZQ9BYH8 718 aa21.26■□□□□ 0.99
SYNE4-202ENST00000340477 C2orf40Q9H1Z8 148 aa21.26■□□□□ 0.99
SYNE4-202ENST00000340477 GPRC5CQ9NQ84 441 aa21.26■□□□□ 0.99
SYNE4-202ENST00000340477 AGPAT5Q9NUQ2 364 aa21.26■□□□□ 0.99
SYNE4-202ENST00000340477 MTUS1Q9ULD2 1270 aa21.26■□□□□ 0.99
SYNE4-202ENST00000340477 COL4A4P53420 1690 aaPredicted RBP21.25■□□□□ 0.99
SYNE4-202ENST00000340477 GTPBP6O43824 516 aaPredicted RBP21.25■□□□□ 0.99
SYNE4-202ENST00000340477 ERVK-21P61565 698 aa21.25■□□□□ 0.99
SYNE4-202ENST00000340477 SLC39A14Q15043 492 aa21.25■□□□□ 0.99
SYNE4-202ENST00000340477 ABI1Q8IZP0 508 aa21.25■□□□□ 0.99
SYNE4-202ENST00000340477 RNF169Q8NCN4 708 aa21.25■□□□□ 0.99
SYNE4-202ENST00000340477 DRC1Q96MC2 740 aa21.25■□□□□ 0.99
SYNE4-202ENST00000340477 PLIN2Q99541 437 aa21.25■□□□□ 0.99
SYNE4-202ENST00000340477 TIPINQ9BVW5 301 aa21.25■□□□□ 0.99
SYNE4-202ENST00000340477 CCDC39Q9UFE4 941 aa21.25■□□□□ 0.99
SYNE4-202ENST00000340477 SRPRBQ9Y5M8 271 aaKnown RBP21.25■□□□□ 0.99
SYNE4-202ENST00000340477 MORC2Q9Y6X9 1032 aaPredicted RBP21.25■□□□□ 0.99
SYNE4-202ENST00000340477 IGFBP4P22692 258 aa21.24■□□□□ 0.99
SYNE4-202ENST00000340477 AXLP30530 894 aa21.24■□□□□ 0.99
SYNE4-202ENST00000340477 NASPP49321 788 aaPredicted RBP21.24■□□□□ 0.99
SYNE4-202ENST00000340477 GRB10Q13322 594 aa21.24■□□□□ 0.99
SYNE4-202ENST00000340477 TMEM119Q4V9L6 283 aa21.24■□□□□ 0.99
SYNE4-202ENST00000340477 IFNLR1Q8IU57 520 aaPredicted RBP21.24■□□□□ 0.99
SYNE4-202ENST00000340477 KRI1Q8N9T8 703 aaKnown RBP21.24■□□□□ 0.99
SYNE4-202ENST00000340477 FBXO22Q8NEZ5 403 aa21.24■□□□□ 0.99
SYNE4-202ENST00000340477 DEPTORQ8TB45 409 aa21.24■□□□□ 0.99
SYNE4-202ENST00000340477 PNMA5Q96PV4 448 aa21.24■□□□□ 0.99
SYNE4-202ENST00000340477 KCND2Q9NZV8 630 aa21.24■□□□□ 0.99
SYNE4-202ENST00000340477 FBXO2Q9UK22 296 aaPredicted RBP21.24■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 88 ms