RNA–Protein interactions for RNA: ENST00000298281.8

PCF11-201, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PCF11, Length 7,677 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-201ENST00000298281 DIS3Q9Y2L1 958 aaKnown RBP12.84□□□□□ -0.35
PCF11-201ENST00000298281 DTNAQ9Y4J8 743 aa12.84□□□□□ -0.35
PCF11-201ENST00000298281 C5orf58C9J3I9 102 aa12.84□□□□□ -0.35
PCF11-201ENST00000298281 SLFN14P0C7P3 912 aa12.84□□□□□ -0.35
PCF11-201ENST00000298281 PLS3P13797 630 aa12.84□□□□□ -0.35
PCF11-201ENST00000298281 ITGAXP20702 1163 aa12.84□□□□□ -0.35
PCF11-201ENST00000298281 MORF4L2Q15014 288 aa12.84□□□□□ -0.35
PCF11-201ENST00000298281 LLGL1Q15334 1064 aa12.84□□□□□ -0.35
PCF11-201ENST00000298281 ZNF827Q17R98 1081 aa12.84□□□□□ -0.35
PCF11-201ENST00000298281 DOK7Q18PE1 504 aa12.84□□□□□ -0.35
PCF11-201ENST00000298281 CC2D1AQ6P1N0 951 aaPredicted RBP12.84□□□□□ -0.35
PCF11-201ENST00000298281 TEX2Q8IWB9 1127 aa12.84□□□□□ -0.35
PCF11-201ENST00000298281 CNPY4Q8N129 248 aa12.84□□□□□ -0.35
PCF11-201ENST00000298281 PNMA3Q9UL41 463 aa12.84□□□□□ -0.35
PCF11-201ENST00000298281 CARMIL3Q8ND23 1372 aa12.84□□□□□ -0.35
PCF11-201ENST00000298281 KITP10721 976 aa12.83□□□□□ -0.35
PCF11-201ENST00000298281 CRLF3Q8IUI8 442 aa12.83□□□□□ -0.35
PCF11-201ENST00000298281 PPIEQ9UNP9 301 aaKnown RBP12.83□□□□□ -0.35
PCF11-201ENST00000298281 RPAP1Q9BWH6 1393 aaPredicted RBP12.83□□□□□ -0.36
PCF11-201ENST00000298281 ZBED6P86452 979 aa12.83□□□□□ -0.36
PCF11-201ENST00000298281 C11orf74Q86VG3 221 aa12.83□□□□□ -0.36
PCF11-201ENST00000298281 ST13P4Q8IZP2 240 aaPredicted RBP12.83□□□□□ -0.36
PCF11-201ENST00000298281 FRMD6Q96NE9 622 aa12.83□□□□□ -0.36
PCF11-201ENST00000298281 THAP9Q9H5L6 903 aa12.83□□□□□ -0.36
PCF11-201ENST00000298281 PI4KBQ9UBF8 816 aa12.83□□□□□ -0.36
PCF11-201ENST00000298281 ANKRD12Q6UB98 2062 aa12.83□□□□□ -0.36
PCF11-201ENST00000298281 LOC102724428A0A0B4J2F2 783 aa12.83□□□□□ -0.36
PCF11-201ENST00000298281 FAM47E-STBD1D6RA91 191 aa12.83□□□□□ -0.36
PCF11-201ENST00000298281 HSPA4LO95757 839 aa12.83□□□□□ -0.36
PCF11-201ENST00000298281 CA4P22748 312 aa12.83□□□□□ -0.36
PCF11-201ENST00000298281 SIK1P57059 783 aa12.83□□□□□ -0.36
PCF11-201ENST00000298281 CENPUQ71F23 418 aa12.83□□□□□ -0.36
PCF11-201ENST00000298281 RHOT2Q8IXI1 618 aa12.83□□□□□ -0.36
PCF11-201ENST00000298281 KRT78Q8N1N4 520 aa12.83□□□□□ -0.36
PCF11-201ENST00000298281 DCUN1D1Q96GG9 259 aa12.83□□□□□ -0.36
PCF11-201ENST00000298281 EPB41L5Q9HCM4 733 aa12.83□□□□□ -0.36
PCF11-201ENST00000298281 UBA6A0AVT1 1052 aaPredicted RBP12.83□□□□□ -0.36
PCF11-201ENST00000298281 TOMM70O94826 608 aa12.83□□□□□ -0.36
PCF11-201ENST00000298281 EDC3Q96F86 508 aaKnown RBP12.83□□□□□ -0.36
PCF11-201ENST00000298281 CCDC151A5D8V7 595 aa12.83□□□□□ -0.36
PCF11-201ENST00000298281 SCRN1Q12765 414 aa12.83□□□□□ -0.36
PCF11-201ENST00000298281 BFSP2Q13515 415 aa12.83□□□□□ -0.36
PCF11-201ENST00000298281 EFTUD2Q15029 972 aaKnown RBP eCLIP12.83□□□□□ -0.36
PCF11-201ENST00000298281 TRIP4Q15650 581 aaPredicted RBP12.83□□□□□ -0.36
PCF11-201ENST00000298281 SHROOM1Q2M3G4 852 aaPredicted RBP12.83□□□□□ -0.36
PCF11-201ENST00000298281 LRRC8BQ6P9F7 803 aa12.83□□□□□ -0.36
PCF11-201ENST00000298281 DIS3LQ8TF46 1054 aaKnown RBP12.83□□□□□ -0.36
PCF11-201ENST00000298281 TCP11Q8WWU5 503 aa12.83□□□□□ -0.36
PCF11-201ENST00000298281 TADA1Q96BN2 335 aa12.83□□□□□ -0.36
PCF11-201ENST00000298281 CLIC6Q96NY7 704 aa12.83□□□□□ -0.36
PCF11-201ENST00000298281 RPF1Q9H9Y2 349 aaKnown RBP12.83□□□□□ -0.36
PCF11-201ENST00000298281 POU5F1BQ06416 359 aa12.82□□□□□ -0.36
PCF11-201ENST00000298281 RC3H1Q5TC82 1133 aaKnown RBP12.82□□□□□ -0.36
PCF11-201ENST00000298281 SLC35F6Q8N357 371 aa12.82□□□□□ -0.36
PCF11-201ENST00000298281 MAGEB10Q96LZ2 347 aaPredicted RBP12.82□□□□□ -0.36
PCF11-201ENST00000298281 FOPNLQ96NB1 174 aa12.82□□□□□ -0.36
PCF11-201ENST00000298281 RNF123Q5XPI4 1314 aa12.82□□□□□ -0.36
PCF11-201ENST00000298281 FAM133BQ5BKY9 247 aaKnown RBP12.82□□□□□ -0.36
PCF11-201ENST00000298281 C6orf118Q5T5N4 469 aa12.82□□□□□ -0.36
PCF11-201ENST00000298281 AGBL1Q96MI9 1066 aa12.82□□□□□ -0.36
PCF11-201ENST00000298281 FMO2Q99518 471 aa12.82□□□□□ -0.36
PCF11-201ENST00000298281 TSEN34Q9BSV6 310 aaKnown RBP12.82□□□□□ -0.36
PCF11-201ENST00000298281 ZNF556Q9HAH1 456 aa12.82□□□□□ -0.36
PCF11-201ENST00000298281 MRPL40Q9NQ50 206 aaKnown RBP12.82□□□□□ -0.36
PCF11-201ENST00000298281 ADA2Q9NZK5 511 aa12.82□□□□□ -0.36
PCF11-201ENST00000298281 CLIC4Q9Y696 253 aa12.82□□□□□ -0.36
PCF11-201ENST00000298281 CFAP43Q8NDM7 1665 aa12.82□□□□□ -0.36
PCF11-201ENST00000298281 COBLO75128 1261 aa12.82□□□□□ -0.36
PCF11-201ENST00000298281 DARSP14868 501 aaKnown RBP12.82□□□□□ -0.36
PCF11-201ENST00000298281 PLTPP55058 493 aa12.82□□□□□ -0.36
PCF11-201ENST00000298281 ARL6IP4Q66PJ3 421 aaKnown RBP12.82□□□□□ -0.36
PCF11-201ENST00000298281 NT5DC4Q86YG4 428 aa12.82□□□□□ -0.36
PCF11-201ENST00000298281 SIX5Q8N196 739 aa12.82□□□□□ -0.36
PCF11-201ENST00000298281 GIMAP8Q8ND71 665 aaPredicted RBP12.82□□□□□ -0.36
PCF11-201ENST00000298281 NEK9Q8TD19 979 aa12.82□□□□□ -0.36
PCF11-201ENST00000298281 PDE11AQ9HCR9 933 aa12.82□□□□□ -0.36
PCF11-201ENST00000298281 SAMSN1Q9NSI8 373 aaKnown RBP12.82□□□□□ -0.36
PCF11-201ENST00000298281 KIAA0556O60303 1618 aa12.82□□□□□ -0.36
PCF11-201ENST00000298281 EXOC1LA0A1B0GW35 172 aa12.82□□□□□ -0.36
PCF11-201ENST00000298281 PODXLO00592 558 aa12.82□□□□□ -0.36
PCF11-201ENST00000298281 ASAP2O43150 1006 aa12.82□□□□□ -0.36
PCF11-201ENST00000298281 CTNND1O60716 968 aaKnown RBP12.82□□□□□ -0.36
PCF11-201ENST00000298281 ZNF189O75820 626 aaPredicted RBP12.82□□□□□ -0.36
PCF11-201ENST00000298281 ALDH1A2O94788 518 aa12.82□□□□□ -0.36
PCF11-201ENST00000298281 ST13P50502 369 aaKnown RBP12.82□□□□□ -0.36
PCF11-201ENST00000298281 EEPD1Q7L9B9 569 aa12.82□□□□□ -0.36
PCF11-201ENST00000298281 TTC8Q8TAM2 541 aa12.82□□□□□ -0.36
PCF11-201ENST00000298281 CYTH3O43739 400 aa12.82□□□□□ -0.36
PCF11-201ENST00000298281 FYNP06241 537 aa12.82□□□□□ -0.36
PCF11-201ENST00000298281 EPB42P16452 691 aa12.82□□□□□ -0.36
PCF11-201ENST00000298281 ADCY2Q08462 1091 aa12.82□□□□□ -0.36
PCF11-201ENST00000298281 CCDC15Q0P6D6 951 aa12.82□□□□□ -0.36
PCF11-201ENST00000298281 MXD3Q9BW11 206 aa12.82□□□□□ -0.36
PCF11-201ENST00000298281 KIAA1586Q9HCI6 787 aa12.82□□□□□ -0.36
PCF11-201ENST00000298281 DNMT1P26358 1616 aaKnown RBP12.82□□□□□ -0.36
PCF11-201ENST00000298281 H0Y626 953 aa12.82□□□□□ -0.36
PCF11-201ENST00000298281 TRIM16O95361 564 aa12.82□□□□□ -0.36
PCF11-201ENST00000298281 ZBED1O96006 694 aa12.82□□□□□ -0.36
PCF11-201ENST00000298281 ESRRAP11474 423 aaPredicted RBP12.82□□□□□ -0.36
PCF11-201ENST00000298281 SLC10A5Q5PT55 438 aa12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 75.4 ms