RNA–Protein interactions for RNA: ENST00000293441.5

SHANK1-201, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene SHANK1, Length 6,643 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-201ENST00000293441 DRP2Q13474 957 aa18.49■□□□□ 0.55
SHANK1-201ENST00000293441 HABP4Q5JVS0 413 aaKnown RBP18.49■□□□□ 0.55
SHANK1-201ENST00000293441 ANGPTL8Q6UXH0 198 aa18.49■□□□□ 0.55
SHANK1-201ENST00000293441 STAG2Q8N3U4 1231 aa18.49■□□□□ 0.55
SHANK1-201ENST00000293441 ORC6Q9Y5N6 252 aa18.49■□□□□ 0.55
SHANK1-201ENST00000293441 CPB1P15086 417 aa18.48■□□□□ 0.55
SHANK1-201ENST00000293441 IFT88Q13099 833 aa18.48■□□□□ 0.55
SHANK1-201ENST00000293441 ACCSLQ4AC99 568 aa18.48■□□□□ 0.55
SHANK1-201ENST00000293441 LDHDQ86WU2 507 aa18.48■□□□□ 0.55
SHANK1-201ENST00000293441 KIF12Q96FN5 646 aa18.48■□□□□ 0.55
SHANK1-201ENST00000293441 PP2D1A8MPX8 630 aa18.48■□□□□ 0.55
SHANK1-201ENST00000293441 GNA15P30679 374 aa18.48■□□□□ 0.55
SHANK1-201ENST00000293441 PROM2Q8N271 834 aa18.48■□□□□ 0.55
SHANK1-201ENST00000293441 KCNH4Q9UQ05 1017 aa18.48■□□□□ 0.55
SHANK1-201ENST00000293441 RASGRF2O14827 1237 aa18.48■□□□□ 0.55
SHANK1-201ENST00000293441 MRPS25P82663 173 aaKnown RBP18.48■□□□□ 0.55
SHANK1-201ENST00000293441 C11orf70Q9BRQ4 267 aa18.48■□□□□ 0.55
SHANK1-201ENST00000293441 SAYSD1Q9NPB0 183 aa18.48■□□□□ 0.55
SHANK1-201ENST00000293441 SLC9A2Q9UBY0 812 aa18.48■□□□□ 0.55
SHANK1-201ENST00000293441 ASB14A6NK59 587 aa18.48■□□□□ 0.55
SHANK1-201ENST00000293441 MGEA5O60502 916 aa18.48■□□□□ 0.55
SHANK1-201ENST00000293441 CHEK2O96017 543 aa18.48■□□□□ 0.55
SHANK1-201ENST00000293441 ART3Q13508 389 aa18.48■□□□□ 0.55
SHANK1-201ENST00000293441 SPON1Q9HCB6 807 aa18.48■□□□□ 0.55
SHANK1-201ENST00000293441 GOLGA8MH3BSY2 632 aa18.48■□□□□ 0.55
SHANK1-201ENST00000293441 CALB1P05937 261 aa18.48■□□□□ 0.55
SHANK1-201ENST00000293441 GPC5P78333 572 aa18.48■□□□□ 0.55
SHANK1-201ENST00000293441 GFPT1Q06210 699 aaPredicted RBP18.48■□□□□ 0.55
SHANK1-201ENST00000293441 MAML1Q92585 1016 aa18.48■□□□□ 0.55
SHANK1-201ENST00000293441 NOVA2Q9UNW9 492 aaKnown RBP18.48■□□□□ 0.55
SHANK1-201ENST00000293441 CDC42BPBQ9Y5S2 1711 aa18.47■□□□□ 0.55
SHANK1-201ENST00000293441 PCSK1NQ9UHG2 260 aa18.47■□□□□ 0.55
SHANK1-201ENST00000293441 CROCC2H7BZ55 1655 aa18.47■□□□□ 0.55
SHANK1-201ENST00000293441 ZNF579Q8NAF0 562 aaKnown RBP18.47■□□□□ 0.55
SHANK1-201ENST00000293441 TBC1D16Q8TBP0 767 aa18.47■□□□□ 0.55
SHANK1-201ENST00000293441 MOCS2O96007 188 aaPredicted RBP18.47■□□□□ 0.55
SHANK1-201ENST00000293441 TAF1BQ53T94 588 aaPredicted RBP18.47■□□□□ 0.55
SHANK1-201ENST00000293441 RMDN2Q96LZ7 410 aa18.47■□□□□ 0.55
SHANK1-201ENST00000293441 CTNND1O60716 968 aaKnown RBP18.47■□□□□ 0.55
SHANK1-201ENST00000293441 MX2P20592 715 aa18.47■□□□□ 0.55
SHANK1-201ENST00000293441 CDR2Q01850 454 aa18.47■□□□□ 0.55
SHANK1-201ENST00000293441 RBM41Q96IZ5 413 aaKnown RBP18.47■□□□□ 0.55
SHANK1-201ENST00000293441 GOLPH3LQ9H4A5 285 aa18.47■□□□□ 0.55
SHANK1-201ENST00000293441 IQGAP3Q86VI3 1631 aa18.47■□□□□ 0.55
SHANK1-201ENST00000293441 LRRC53A6NM62 1247 aa18.47■□□□□ 0.55
SHANK1-201ENST00000293441 TBXAS1P24557 533 aaPredicted RBP18.47■□□□□ 0.55
SHANK1-201ENST00000293441 NNMTP40261 264 aa18.47■□□□□ 0.55
SHANK1-201ENST00000293441 MXD3Q9BW11 206 aa18.47■□□□□ 0.55
SHANK1-201ENST00000293441 RBAKQ9NYW8 714 aaPredicted RBP18.47■□□□□ 0.55
SHANK1-201ENST00000293441 STRIP2Q9ULQ0 834 aa18.47■□□□□ 0.55
SHANK1-201ENST00000293441 ZNRF3Q9ULT6 936 aa18.47■□□□□ 0.55
SHANK1-201ENST00000293441 CDC42BPAQ5VT25 1732 aa18.46■□□□□ 0.55
SHANK1-201ENST00000293441 TXNP10599 105 aaKnown RBP18.46■□□□□ 0.55
SHANK1-201ENST00000293441 A8MXQ7 604 aa18.46■□□□□ 0.55
SHANK1-201ENST00000293441 SCARF1Q14162 830 aa18.46■□□□□ 0.55
SHANK1-201ENST00000293441 KIF19Q2TAC6 998 aa18.46■□□□□ 0.55
SHANK1-201ENST00000293441 SZRD1Q7Z422 152 aa18.46■□□□□ 0.55
SHANK1-201ENST00000293441 NUP85Q9BW27 656 aa18.46■□□□□ 0.55
SHANK1-201ENST00000293441 INTS2Q9H0H0 1204 aaKnown RBP18.46■□□□□ 0.55
SHANK1-201ENST00000293441 ZRANB2O95218 330 aaKnown RBP eCLIP18.46■□□□□ 0.55
SHANK1-201ENST00000293441 PAPOLAP51003 745 aaKnown RBP18.46■□□□□ 0.55
SHANK1-201ENST00000293441 MRPL46Q9H2W6 279 aaKnown RBP18.46■□□□□ 0.55
SHANK1-201ENST00000293441 TAC1P20366 129 aa18.46■□□□□ 0.55
SHANK1-201ENST00000293441 COPB2P35606 906 aa18.46■□□□□ 0.55
SHANK1-201ENST00000293441 PSMC1P62191 440 aaKnown RBP18.46■□□□□ 0.55
SHANK1-201ENST00000293441 OCRLQ01968 901 aa18.46■□□□□ 0.55
SHANK1-201ENST00000293441 CPSF2Q9P2I0 782 aaKnown RBP18.46■□□□□ 0.55
SHANK1-201ENST00000293441 WDR19Q8NEZ3 1342 aa18.46■□□□□ 0.55
SHANK1-201ENST00000293441 SPECC1L-ADORA2AF8WAN1 911 aa18.45■□□□□ 0.54
SHANK1-201ENST00000293441 PI4K2BG5E9Z4 385 aa18.45■□□□□ 0.54
SHANK1-201ENST00000293441 CFLARO15519 480 aa18.45■□□□□ 0.54
SHANK1-201ENST00000293441 CACNB2Q08289 660 aaPredicted RBP18.45■□□□□ 0.54
SHANK1-201ENST00000293441 FAM133BQ5BKY9 247 aaKnown RBP18.45■□□□□ 0.54
SHANK1-201ENST00000293441 VPS39Q96JC1 886 aa18.45■□□□□ 0.54
SHANK1-201ENST00000293441 SARS2Q9NP81 518 aaKnown RBP18.45■□□□□ 0.54
SHANK1-201ENST00000293441 SUCLA2Q9P2R7 463 aaPredicted RBP18.45■□□□□ 0.54
SHANK1-201ENST00000293441 MID2Q9UJV3 735 aa18.45■□□□□ 0.54
SHANK1-201ENST00000293441 SLC13A4Q9UKG4 626 aa18.45■□□□□ 0.54
SHANK1-201ENST00000293441 AP1B1Q10567 949 aa18.45■□□□□ 0.54
SHANK1-201ENST00000293441 NNTQ13423 1086 aa18.45■□□□□ 0.54
SHANK1-201ENST00000293441 EPB41L3Q9Y2J2 1087 aaPredicted RBP18.45■□□□□ 0.54
SHANK1-201ENST00000293441 LGALS16A8MUM7 142 aa18.45■□□□□ 0.54
SHANK1-201ENST00000293441 RSBN1LQ6PCB5 846 aaPredicted RBP18.45■□□□□ 0.54
SHANK1-201ENST00000293441 GPD1LQ8N335 351 aa18.45■□□□□ 0.54
SHANK1-201ENST00000293441 TSR3Q9UJK0 312 aaKnown RBP18.45■□□□□ 0.54
SHANK1-201ENST00000293441 TULP4Q9NRJ4 1543 aa18.45■□□□□ 0.54
SHANK1-201ENST00000293441 SDC4P31431 198 aa18.45■□□□□ 0.54
SHANK1-201ENST00000293441 INPP1P49441 399 aa18.45■□□□□ 0.54
SHANK1-201ENST00000293441 ANKRD20A4Q4UJ75 823 aa18.45■□□□□ 0.54
SHANK1-201ENST00000293441 ANKRD20A8PQ5CZ79 823 aa18.45■□□□□ 0.54
SHANK1-201ENST00000293441 ANKRD20A2Q5SQ80 823 aa18.45■□□□□ 0.54
SHANK1-201ENST00000293441 ANKRD20A1Q5TYW2 823 aa18.45■□□□□ 0.54
SHANK1-201ENST00000293441 ZNF746Q6NUN9 644 aaPredicted RBP18.45■□□□□ 0.54
SHANK1-201ENST00000293441 JPH1Q9HDC5 661 aaPredicted RBP18.45■□□□□ 0.54
SHANK1-201ENST00000293441 SNX2O60749 519 aa18.45■□□□□ 0.54
SHANK1-201ENST00000293441 RNF25Q96BH1 459 aaPredicted RBP18.45■□□□□ 0.54
SHANK1-201ENST00000293441 SP110Q9HB58 689 aa18.45■□□□□ 0.54
SHANK1-201ENST00000293441 LCP1P13796 627 aa18.44■□□□□ 0.54
SHANK1-201ENST00000293441 YWHABP31946 246 aaKnown RBP18.44■□□□□ 0.54
SHANK1-201ENST00000293441 ZNF157P51786 506 aaPredicted RBP18.44■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms