RNA–Protein interactions for RNA: ENST00000249837.7

VPS13C-201, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VPS13C, Length 13,300 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-201ENST00000249837 CSRNP1Q96S65 589 aa4.96□□□□□ -1.62
VPS13C-201ENST00000249837 KLHL11Q9NVR0 708 aa4.96□□□□□ -1.62
VPS13C-201ENST00000249837 DDX52Q9Y2R4 599 aaKnown RBP eCLIP4.96□□□□□ -1.62
VPS13C-201ENST00000249837 CHD2O14647 1828 aaKnown RBP4.96□□□□□ -1.62
VPS13C-201ENST00000249837 FAM187AA6NFU0 413 aa4.96□□□□□ -1.62
VPS13C-201ENST00000249837 H0Y3Z8 333 aa4.96□□□□□ -1.62
VPS13C-201ENST00000249837 ZBTB5O15062 677 aa4.96□□□□□ -1.62
VPS13C-201ENST00000249837 SLC16A4O15374 487 aa4.96□□□□□ -1.62
VPS13C-201ENST00000249837 MEFVO15553 781 aaPredicted RBP4.96□□□□□ -1.62
VPS13C-201ENST00000249837 PDHA1P08559 390 aa4.96□□□□□ -1.62
VPS13C-201ENST00000249837 USP11P51784 963 aa4.96□□□□□ -1.62
VPS13C-201ENST00000249837 KIAA1755Q5JYT7 1200 aa4.96□□□□□ -1.62
VPS13C-201ENST00000249837 ZBTB33Q86T24 672 aa4.96□□□□□ -1.62
VPS13C-201ENST00000249837 GRK7Q8WTQ7 553 aa4.96□□□□□ -1.62
VPS13C-201ENST00000249837 SREK1Q8WXA9 508 aaKnown RBP4.96□□□□□ -1.62
VPS13C-201ENST00000249837 CFAP36Q96G28 342 aa4.96□□□□□ -1.62
VPS13C-201ENST00000249837 GBP5Q96PP8 586 aa4.96□□□□□ -1.62
VPS13C-201ENST00000249837 DNAJC7Q99615 494 aa4.96□□□□□ -1.62
VPS13C-201ENST00000249837 TYW1Q9NV66 732 aaKnown RBP4.96□□□□□ -1.62
VPS13C-201ENST00000249837 FGFR1OP2Q9NVK5 253 aa4.96□□□□□ -1.62
VPS13C-201ENST00000249837 DYNC1LI1Q9Y6G9 523 aaKnown RBP4.96□□□□□ -1.62
VPS13C-201ENST00000249837 MYH7BA7E2Y1 1941 aa4.96□□□□□ -1.62
VPS13C-201ENST00000249837 ZSCAN5CA6NGD5 496 aaPredicted RBP4.96□□□□□ -1.62
VPS13C-201ENST00000249837 HNRNPDLO14979 420 aaKnown RBP4.96□□□□□ -1.62
VPS13C-201ENST00000249837 TROVE2P10155 538 aaKnown RBP eCLIP4.96□□□□□ -1.62
VPS13C-201ENST00000249837 CASP4P49662 377 aa4.96□□□□□ -1.62
VPS13C-201ENST00000249837 DNAJC24Q6P3W2 148 aa4.96□□□□□ -1.62
VPS13C-201ENST00000249837 METTL13Q8N6R0 699 aa4.96□□□□□ -1.62
VPS13C-201ENST00000249837 BBOF1Q8ND07 529 aa4.96□□□□□ -1.62
VPS13C-201ENST00000249837 GLIS3Q8NEA6 775 aa4.96□□□□□ -1.62
VPS13C-201ENST00000249837 TDRD3Q9H7E2 651 aaKnown RBP4.96□□□□□ -1.62
VPS13C-201ENST00000249837 JMJD4Q9H9V9 463 aa4.96□□□□□ -1.62
VPS13C-201ENST00000249837 SSU72P8A0A1W2PR75 194 aa4.96□□□□□ -1.62
VPS13C-201ENST00000249837 MAP2K7O14733 419 aa4.96□□□□□ -1.62
VPS13C-201ENST00000249837 FMO5P49326 533 aa4.96□□□□□ -1.62
VPS13C-201ENST00000249837 ORC2Q13416 577 aaPredicted RBP4.96□□□□□ -1.62
VPS13C-201ENST00000249837 WDR59Q6PJI9 974 aa4.96□□□□□ -1.62
VPS13C-201ENST00000249837 PAXIP1Q6ZW49 1069 aaPredicted RBP4.96□□□□□ -1.62
VPS13C-201ENST00000249837 SH3RF1Q7Z6J0 888 aa4.96□□□□□ -1.62
VPS13C-201ENST00000249837 KIF2BQ8N4N8 673 aa4.96□□□□□ -1.62
VPS13C-201ENST00000249837 MYCBPAPQ8TBZ2 947 aa4.96□□□□□ -1.62
VPS13C-201ENST00000249837 C11orf70Q9BRQ4 267 aa4.96□□□□□ -1.62
VPS13C-201ENST00000249837 SYNJ2BP-COX16A0A087WUM0 186 aa4.95□□□□□ -1.62
VPS13C-201ENST00000249837 RCCD1A6NED2 376 aa4.95□□□□□ -1.62
VPS13C-201ENST00000249837 PDHBP11177 359 aa4.95□□□□□ -1.62
VPS13C-201ENST00000249837 MED15Q96RN5 788 aa4.95□□□□□ -1.62
VPS13C-201ENST00000249837 COX16Q9P0S2 106 aa4.95□□□□□ -1.62
VPS13C-201ENST00000249837 PPARGC1AQ9UBK2 798 aaKnown RBP4.95□□□□□ -1.62
VPS13C-201ENST00000249837 CASZ1Q86V15 1759 aa4.95□□□□□ -1.62
VPS13C-201ENST00000249837 GLI1P08151 1106 aa4.95□□□□□ -1.62
VPS13C-201ENST00000249837 CHRNA3P32297 505 aa4.95□□□□□ -1.62
VPS13C-201ENST00000249837 EIF3BP55884 814 aaKnown RBP4.95□□□□□ -1.62
VPS13C-201ENST00000249837 TFAMQ00059 246 aaKnown RBP4.95□□□□□ -1.62
VPS13C-201ENST00000249837 GPS1Q13098 491 aa4.95□□□□□ -1.62
VPS13C-201ENST00000249837 PSMD6Q15008 389 aa4.95□□□□□ -1.62
VPS13C-201ENST00000249837 C9orf72Q96LT7 481 aa4.95□□□□□ -1.62
VPS13C-201ENST00000249837 COA1Q9GZY4 146 aa4.95□□□□□ -1.62
VPS13C-201ENST00000249837 A0A1W2PQJ5 194 aa4.95□□□□□ -1.62
VPS13C-201ENST00000249837 ARHGAP42A6NI28 874 aa4.95□□□□□ -1.62
VPS13C-201ENST00000249837 LRRC34Q8IZ02 419 aa4.95□□□□□ -1.62
VPS13C-201ENST00000249837 SEPT9Q9UHD8 586 aaPredicted RBP4.95□□□□□ -1.62
VPS13C-201ENST00000249837 SARNPP82979 210 aaKnown RBP4.95□□□□□ -1.62
VPS13C-201ENST00000249837 PPP2R5CQ13362 524 aa4.95□□□□□ -1.62
VPS13C-201ENST00000249837 SCARA5Q6ZMJ2 495 aa4.95□□□□□ -1.62
VPS13C-201ENST00000249837 TRIM59Q8IWR1 403 aa4.95□□□□□ -1.62
VPS13C-201ENST00000249837 SCYL3Q8IZE3 742 aa4.95□□□□□ -1.62
VPS13C-201ENST00000249837 KIAA0895Q8NCT3 520 aa4.95□□□□□ -1.62
VPS13C-201ENST00000249837 REEP2Q9BRK0 252 aa4.95□□□□□ -1.62
VPS13C-201ENST00000249837 DDX23Q9BUQ8 820 aaKnown RBP4.95□□□□□ -1.62
VPS13C-201ENST00000249837 IL17RBQ9NRM6 502 aa4.95□□□□□ -1.62
VPS13C-201ENST00000249837 KNL1Q8NG31 2342 aa4.95□□□□□ -1.62
VPS13C-201ENST00000249837 LRRD1A4D1F6 860 aa4.95□□□□□ -1.62
VPS13C-201ENST00000249837 DKC1O60832 514 aaKnown RBP eCLIP4.95□□□□□ -1.62
VPS13C-201ENST00000249837 UCHL3P15374 230 aa4.95□□□□□ -1.62
VPS13C-201ENST00000249837 CC2D2BQ6DHV5 1058 aa4.95□□□□□ -1.62
VPS13C-201ENST00000249837 PACS2Q86VP3 889 aa4.95□□□□□ -1.62
VPS13C-201ENST00000249837 RFX6Q8HWS3 928 aa4.95□□□□□ -1.62
VPS13C-201ENST00000249837 XXYLT1Q8NBI6 393 aa4.95□□□□□ -1.62
VPS13C-201ENST00000249837 FAM118BQ9BPY3 351 aa4.95□□□□□ -1.62
VPS13C-201ENST00000249837 DAGLAQ9Y4D2 1042 aa4.95□□□□□ -1.62
VPS13C-201ENST00000249837 EVI5O60447 810 aa4.95□□□□□ -1.62
VPS13C-201ENST00000249837 OPHN1O60890 802 aa4.95□□□□□ -1.62
VPS13C-201ENST00000249837 CD58P19256 250 aa4.95□□□□□ -1.62
VPS13C-201ENST00000249837 CA4P22748 312 aa4.95□□□□□ -1.62
VPS13C-201ENST00000249837 FXR2P51116 673 aaKnown RBP eCLIP4.95□□□□□ -1.622e-7■■■■□ 19.9
VPS13C-201ENST00000249837 SMAD1Q15797 465 aaKnown RBP4.95□□□□□ -1.62
VPS13C-201ENST00000249837 ZNF571Q7Z3V5 609 aaPredicted RBP4.95□□□□□ -1.62
VPS13C-201ENST00000249837 LBHD1Q9BQE6 289 aaPredicted RBP4.95□□□□□ -1.62
VPS13C-201ENST00000249837 URB1O60287 2271 aaKnown RBP4.95□□□□□ -1.62
VPS13C-201ENST00000249837 F5H6K3 240 aa4.95□□□□□ -1.62
VPS13C-201ENST00000249837 KLRC3Q07444 240 aa4.95□□□□□ -1.62
VPS13C-201ENST00000249837 RCN2Q14257 317 aa4.95□□□□□ -1.62
VPS13C-201ENST00000249837 SEPT14Q6ZU15 432 aa4.95□□□□□ -1.62
VPS13C-201ENST00000249837 NUDT12Q9BQG2 462 aa4.95□□□□□ -1.62
VPS13C-201ENST00000249837 FRMD4AQ9P2Q2 1039 aaPredicted RBP4.95□□□□□ -1.62
VPS13C-201ENST00000249837 SYNGAP1Q96PV0 1343 aa4.95□□□□□ -1.62
VPS13C-201ENST00000249837 ZNF233A6NK53 670 aa4.95□□□□□ -1.62
VPS13C-201ENST00000249837 CHN1P15882 459 aa4.95□□□□□ -1.62
VPS13C-201ENST00000249837 PDE6BP35913 854 aa4.95□□□□□ -1.62
VPS13C-201ENST00000249837 CXorf56Q9H5V9 222 aa4.95□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms