RNA–Protein interactions for RNA: ENST00000618395.4

COL5A1-208, Transcript of collagen type V alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL5A1, Length 8,437 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1-208ENST00000618395 SLC4A3P48751 1232 aa18.38■□□□□ 0.53
COL5A1-208ENST00000618395 CARD11Q9BXL7 1154 aa18.38■□□□□ 0.53
COL5A1-208ENST00000618395 GPATCH3Q96I76 525 aa18.38■□□□□ 0.53
COL5A1-208ENST00000618395 GPATCH11Q8N954 259 aa18.37■□□□□ 0.53
COL5A1-208ENST00000618395 RSPH4AQ5TD94 716 aa18.37■□□□□ 0.53
COL5A1-208ENST00000618395 CENPQQ7L2Z9 268 aaPredicted RBP18.37■□□□□ 0.53
COL5A1-208ENST00000618395 CALCOCO1Q9P1Z2 691 aa18.37■□□□□ 0.53
COL5A1-208ENST00000618395 H3BQV1 296 aa18.37■□□□□ 0.53
COL5A1-208ENST00000618395 IRX3P78415 501 aaPredicted RBP18.37■□□□□ 0.53
COL5A1-208ENST00000618395 IFFO2Q5TF58 517 aa18.37■□□□□ 0.53
COL5A1-208ENST00000618395 UQCRHLA0A096LP55 91 aa18.36■□□□□ 0.53
COL5A1-208ENST00000618395 UQCRHP07919 91 aa18.36■□□□□ 0.53
COL5A1-208ENST00000618395 ITPRIPQ8IWB1 547 aa18.36■□□□□ 0.53
COL5A1-208ENST00000618395 CCDC173Q0VFZ6 552 aa18.36■□□□□ 0.53
COL5A1-208ENST00000618395 CHMP5Q9NZZ3 219 aa18.36■□□□□ 0.53
COL5A1-208ENST00000618395 CAGE1Q8TC20 777 aa18.36■□□□□ 0.53
COL5A1-208ENST00000618395 BBXQ8WY36 941 aaPredicted RBP18.36■□□□□ 0.53
COL5A1-208ENST00000618395 ANKRD20A12PQ8NF67 263 aa18.36■□□□□ 0.53
COL5A1-208ENST00000618395 TRIM6-TRIM34B2RNG4 842 aa18.35■□□□□ 0.53
COL5A1-208ENST00000618395 AXDND1Q5T1B0 1012 aaPredicted RBP18.35■□□□□ 0.53
COL5A1-208ENST00000618395 ERICH4A6NGS2 130 aa18.34■□□□□ 0.53
COL5A1-208ENST00000618395 APBB1O00213 710 aa18.34■□□□□ 0.53
COL5A1-208ENST00000618395 MYO6Q9UM54 1294 aa18.34■□□□□ 0.53
COL5A1-208ENST00000618395 PDCL3Q9H2J4 239 aa18.34■□□□□ 0.53
COL5A1-208ENST00000618395 CT47B1P0C2W7 299 aaPredicted RBP18.33■□□□□ 0.53
COL5A1-208ENST00000618395 NOL8Q76FK4 1167 aaKnown RBP18.32■□□□□ 0.52
COL5A1-208ENST00000618395 MTUS2Q5JR59 1369 aa18.32■□□□□ 0.52
COL5A1-208ENST00000618395 EIF3JO75822 258 aaKnown RBP18.31■□□□□ 0.52
COL5A1-208ENST00000618395 CCP110O43303 1012 aa18.31■□□□□ 0.52
COL5A1-208ENST00000618395 HOOK1Q9UJC3 728 aaKnown RBP18.31■□□□□ 0.52
COL5A1-208ENST00000618395 CHMP4CQ96CF2 233 aa18.3■□□□□ 0.52
COL5A1-208ENST00000618395 DDX11Q96FC9 970 aa18.3■□□□□ 0.52
COL5A1-208ENST00000618395 SASS6Q6UVJ0 657 aa18.3■□□□□ 0.52
COL5A1-208ENST00000618395 SKIDA1Q1XH10 827 aa18.29■□□□□ 0.52
COL5A1-208ENST00000618395 BCL11BQ9C0K0 894 aaPredicted RBP18.29■□□□□ 0.52
COL5A1-208ENST00000618395 PPP1R15AO75807 674 aaPredicted RBP18.29■□□□□ 0.52
COL5A1-208ENST00000618395 PDCL2Q8N4E4 241 aa18.28■□□□□ 0.52
COL5A1-208ENST00000618395 FBXO3Q9UK99 471 aa18.28■□□□□ 0.52
COL5A1-208ENST00000618395 FOXD4L6Q3SYB3 417 aaPredicted RBP18.28■□□□□ 0.52
COL5A1-208ENST00000618395 FOXD4L3Q6VB84 417 aaPredicted RBP18.28■□□□□ 0.52
COL5A1-208ENST00000618395 GOLGA6L10A6NI86 522 aa18.28■□□□□ 0.52
COL5A1-208ENST00000618395 CGNQ9P2M7 1197 aaKnown RBP18.28■□□□□ 0.52
COL5A1-208ENST00000618395 CLASRPQ8N2M8 674 aaKnown RBP18.27■□□□□ 0.52
COL5A1-208ENST00000618395 CENPHQ9H3R5 247 aa18.27■□□□□ 0.52
COL5A1-208ENST00000618395 ISY1Q9ULR0 285 aaKnown RBP18.27■□□□□ 0.52
COL5A1-208ENST00000618395 NUCB2P80303 420 aa18.27■□□□□ 0.51
COL5A1-208ENST00000618395 DNAJC2Q99543 621 aaKnown RBP18.27■□□□□ 0.51
COL5A1-208ENST00000618395 NAT10Q9H0A0 1025 aaKnown RBP18.27■□□□□ 0.51
COL5A1-208ENST00000618395 ABCC9O60706 1549 aa18.27■□□□□ 0.51
COL5A1-208ENST00000618395 CAVIN1Q6NZI2 390 aaKnown RBP18.26■□□□□ 0.51
COL5A1-208ENST00000618395 KTN1Q86UP2 1357 aaKnown RBP18.26■□□□□ 0.51
COL5A1-208ENST00000618395 NPHP1O15259 732 aa18.26■□□□□ 0.51
COL5A1-208ENST00000618395 RBM25P49756 843 aaKnown RBP18.25■□□□□ 0.51
COL5A1-208ENST00000618395 FAM184AQ8NB25 1140 aa18.25■□□□□ 0.51
COL5A1-208ENST00000618395 PCMTD1Q96MG8 357 aaPredicted RBP18.25■□□□□ 0.51
COL5A1-208ENST00000618395 MCTP1Q6DN14 999 aa18.25■□□□□ 0.51
COL5A1-208ENST00000618395 SSR1P43307 286 aaKnown RBP18.24■□□□□ 0.51
COL5A1-208ENST00000618395 CLIP1P30622 1438 aa18.24■□□□□ 0.51
COL5A1-208ENST00000618395 PDIA4P13667 645 aaKnown RBP18.24■□□□□ 0.51
COL5A1-208ENST00000618395 ABCF1Q8NE71 845 aaKnown RBP eCLIP18.23■□□□□ 0.51
COL5A1-208ENST00000618395 RALBP1Q15311 655 aa18.23■□□□□ 0.51
COL5A1-208ENST00000618395 IPO4Q8TEX9 1081 aaKnown RBP18.23■□□□□ 0.51
COL5A1-208ENST00000618395 LETM1O95202 739 aaPredicted RBP18.22■□□□□ 0.51
COL5A1-208ENST00000618395 GTF2A1P52655 376 aaPredicted RBP18.22■□□□□ 0.51
COL5A1-208ENST00000618395 SLTMQ9NWH9 1034 aaKnown RBP eCLIP18.22■□□□□ 0.51
COL5A1-208ENST00000618395 FAM107BQ9H098 131 aa18.22■□□□□ 0.51
COL5A1-208ENST00000618395 PRDM10Q9NQV6 1147 aa18.22■□□□□ 0.51
COL5A1-208ENST00000618395 E9PSI1 815 aa18.21■□□□□ 0.51
COL5A1-208ENST00000618395 CHMP4AQ9BY43 222 aa18.21■□□□□ 0.51
COL5A1-208ENST00000618395 TRAK2O60296 914 aa18.21■□□□□ 0.51
COL5A1-208ENST00000618395 RRP7BPQ9NSQ0 103 aa18.21■□□□□ 0.51
COL5A1-208ENST00000618395 NAP1L1P55209 391 aaKnown RBP18.21■□□□□ 0.51
COL5A1-208ENST00000618395 ZNF526Q8TF50 670 aaPredicted RBP18.21■□□□□ 0.51
COL5A1-208ENST00000618395 MYO15BQ96JP2 1530 aa18.21■□□□□ 0.51
COL5A1-208ENST00000618395 PLEKHG5O94827 1062 aa18.2■□□□□ 0.5
COL5A1-208ENST00000618395 PDE3BQ13370 1112 aa18.19■□□□□ 0.5
COL5A1-208ENST00000618395 CCDC112Q8NEF3 446 aa18.19■□□□□ 0.5
COL5A1-208ENST00000618395 SCRIBQ14160 1630 aa18.19■□□□□ 0.5
COL5A1-208ENST00000618395 ZHX1Q9UKY1 873 aaPredicted RBP18.19■□□□□ 0.5
COL5A1-208ENST00000618395 ERLIN1O75477 346 aa18.19■□□□□ 0.5
COL5A1-208ENST00000618395 GORABQ5T7V8 394 aa18.19■□□□□ 0.5
COL5A1-208ENST00000618395 BICD2Q8TD16 824 aa18.19■□□□□ 0.5
COL5A1-208ENST00000618395 ESPNB1AK53 854 aa18.18■□□□□ 0.5
COL5A1-208ENST00000618395 TNNT1P13805 278 aa18.18■□□□□ 0.5
COL5A1-208ENST00000618395 PHLDB1Q86UU1 1377 aa18.18■□□□□ 0.5
COL5A1-208ENST00000618395 CGNL1Q0VF96 1302 aa18.17■□□□□ 0.5
COL5A1-208ENST00000618395 TIGD1Q96MW7 591 aa18.17■□□□□ 0.5
COL5A1-208ENST00000618395 DHX8Q14562 1220 aaKnown RBP18.17■□□□□ 0.5
COL5A1-208ENST00000618395 RNF20Q5VTR2 975 aa18.17■□□□□ 0.5
COL5A1-208ENST00000618395 TICAM2Q86XR7 235 aa18.17■□□□□ 0.5
COL5A1-208ENST00000618395 CHMP3Q9Y3E7 222 aa18.17■□□□□ 0.5
COL5A1-208ENST00000618395 TMF1P82094 1093 aa18.16■□□□□ 0.5
COL5A1-208ENST00000618395 RSF1Q96T23 1441 aaPredicted RBP18.16■□□□□ 0.5
COL5A1-208ENST00000618395 RGL3Q3MIN7 710 aa18.16■□□□□ 0.5
COL5A1-208ENST00000618395 HMGB1P09429 215 aaKnown RBP18.16■□□□□ 0.5
COL5A1-208ENST00000618395 REC8O95072 547 aa18.15■□□□□ 0.5
COL5A1-208ENST00000618395 TRIM5Q9C035 493 aa18.15■□□□□ 0.5
COL5A1-208ENST00000618395 CBX1P83916 185 aa18.15■□□□□ 0.5
COL5A1-208ENST00000618395 ERLIN2O94905 339 aa18.14■□□□□ 0.49
COL5A1-208ENST00000618395 SMC4Q9NTJ3 1288 aa18.14■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 102 ms