RNA–Protein interactions for RNA: ENST00000541488.1

PRKDC-210, Transcript of protein kinase, DNA-activated, catalytic subunit, human

TSL 3

Gene PRKDC, Length 719 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PRKDC-210	ENST00000541488	NRG2	O14511	850 aa	Predicted RBP	11.34	□□□□□ -0.59
PRKDC-210	ENST00000541488	LAPTM4B	Q86VI4	370 aa		11.34	□□□□□ -0.59
PRKDC-210	ENST00000541488	DNAJC5	Q9H3Z4	198 aa		11.34	□□□□□ -0.59
PRKDC-210	ENST00000541488	COL9A1	P20849	921 aa		11.33	□□□□□ -0.6
PRKDC-210	ENST00000541488	ZFR	Q96KR1	1074 aa	Known RBP	11.33	□□□□□ -0.6
PRKDC-210	ENST00000541488	ZNF787	Q6DD87	383 aa		11.32	□□□□□ -0.6
PRKDC-210	ENST00000541488	CRISPLD2	Q9H0B8	497 aa		11.32	□□□□□ -0.6
PRKDC-210	ENST00000541488	GTPBP6	O43824	516 aa	Predicted RBP	11.31	□□□□□ -0.6
PRKDC-210	ENST00000541488	PRKD2	Q9BZL6	878 aa		11.29	□□□□□ -0.6
PRKDC-210	ENST00000541488	ZNF775	Q96BV0	537 aa	Predicted RBP	11.28	□□□□□ -0.6
PRKDC-210	ENST00000541488	KIAA1468	Q9P260	1216 aa		11.28	□□□□□ -0.6
PRKDC-210	ENST00000541488	SEPT9	Q9UHD8	586 aa	Predicted RBP	11.27	□□□□□ -0.61
PRKDC-210	ENST00000541488	RYDEN	Q9NUL5	291 aa	Known RBP	11.26	□□□□□ -0.61
PRKDC-210	ENST00000541488	PCDHGA10	Q9Y5H3	936 aa		11.26	□□□□□ -0.61
PRKDC-210	ENST00000541488	BBX	Q8WY36	941 aa	Predicted RBP	11.24	□□□□□ -0.61
PRKDC-210	ENST00000541488	TSR3	Q9UJK0	312 aa	Known RBP	11.24	□□□□□ -0.61
PRKDC-210	ENST00000541488	HPS5	Q9UPZ3	1129 aa		11.24	□□□□□ -0.61
PRKDC-210	ENST00000541488	CDKN2AIP	Q9NXV6	580 aa	Predicted RBP	11.21	□□□□□ -0.61
PRKDC-210	ENST00000541488	NCKAP5L	Q9HCH0	1330 aa		11.2	□□□□□ -0.62
PRKDC-210	ENST00000541488	LRCH3	Q96II8	777 aa		11.19	□□□□□ -0.62
PRKDC-210	ENST00000541488	CFAP44	Q96MT7	982 aa		11.19	□□□□□ -0.62
PRKDC-210	ENST00000541488	MAP3K9	P80192	1104 aa		11.18	□□□□□ -0.62
PRKDC-210	ENST00000541488	FAM98C	Q17RN3	349 aa	Known RBP	11.18	□□□□□ -0.62
PRKDC-210	ENST00000541488		V9GY48	417 aa	Predicted RBP	11.18	□□□□□ -0.62
PRKDC-210	ENST00000541488	ONECUT3	O60422	494 aa	Predicted RBP	11.17	□□□□□ -0.62
PRKDC-210	ENST00000541488	TYW1B	Q6NUM6	668 aa		11.17	□□□□□ -0.62
PRKDC-210	ENST00000541488	FBXW7	Q969H0	707 aa		11.17	□□□□□ -0.62
PRKDC-210	ENST00000541488	ZBTB4	Q9P1Z0	1013 aa	Predicted RBP	11.17	□□□□□ -0.62
PRKDC-210	ENST00000541488	TJAP1	Q5JTD0	557 aa		11.16	□□□□□ -0.62
PRKDC-210	ENST00000541488	PAXIP1	Q6ZW49	1069 aa	Predicted RBP	11.16	□□□□□ -0.62
PRKDC-210	ENST00000541488	PDE4A	P27815	886 aa		11.15	□□□□□ -0.62
PRKDC-210	ENST00000541488	PDZRN3	Q9UPQ7	1066 aa		11.15	□□□□□ -0.62
PRKDC-210	ENST00000541488	PPP1R18	Q6NYC8	613 aa		11.14	□□□□□ -0.63
PRKDC-210	ENST00000541488	SPRYD3	Q8NCJ5	442 aa		11.14	□□□□□ -0.63
PRKDC-210	ENST00000541488	TRIM6-TRIM34	B2RNG4	842 aa		11.13	□□□□□ -0.63
PRKDC-210	ENST00000541488	PHF14	O94880	888 aa		11.12	□□□□□ -0.63
PRKDC-210	ENST00000541488	CADPS2	Q86UW7	1296 aa		11.12	□□□□□ -0.63
PRKDC-210	ENST00000541488	EMILIN3	Q9NT22	766 aa		11.1	□□□□□ -0.63
PRKDC-210	ENST00000541488	C6orf132	Q5T0Z8	1188 aa		11.09	□□□□□ -0.63
PRKDC-210	ENST00000541488	PPP4C	P60510	307 aa		11.08	□□□□□ -0.64
PRKDC-210	ENST00000541488	DDX27	Q96GQ7	796 aa	Known RBP	11.08	□□□□□ -0.64
PRKDC-210	ENST00000541488	MTR	Q99707	1265 aa		11.08	□□□□□ -0.64
PRKDC-210	ENST00000541488	LARP6	Q9BRS8	491 aa	Known RBP	11.08	□□□□□ -0.64
PRKDC-210	ENST00000541488	EIF4ENIF1	Q9NRA8	985 aa	Known RBP	11.07	□□□□□ -0.64
PRKDC-210	ENST00000541488	IL21	Q9HBE4	155 aa		11.06	□□□□□ -0.64
PRKDC-210	ENST00000541488	ZNF516	Q92618	1163 aa		11.03	□□□□□ -0.64
PRKDC-210	ENST00000541488	MFSD10	Q14728	455 aa		11.01	□□□□□ -0.65
PRKDC-210	ENST00000541488	EPAS1	Q99814	870 aa		11.01	□□□□□ -0.65
PRKDC-210	ENST00000541488	POTEC	B2RU33	542 aa		10.99	□□□□□ -0.65
PRKDC-210	ENST00000541488	RBM33	Q96EV2	1170 aa	Known RBP	10.99	□□□□□ -0.65
PRKDC-210	ENST00000541488	TSKS	Q9UJT2	592 aa		10.99	□□□□□ -0.65
PRKDC-210	ENST00000541488	SAMD7	Q7Z3H4	446 aa		10.98	□□□□□ -0.65
PRKDC-210	ENST00000541488	NKX2-3	Q8TAU0	364 aa		10.97	□□□□□ -0.65
PRKDC-210	ENST00000541488	PACS2	Q86VP3	889 aa		10.96	□□□□□ -0.65
PRKDC-210	ENST00000541488	MYT1	Q01538	1121 aa		10.95	□□□□□ -0.66
PRKDC-210	ENST00000541488	TRIM67	Q6ZTA4	783 aa		10.95	□□□□□ -0.66
PRKDC-210	ENST00000541488	SMAP	O00193	183 aa		10.93	□□□□□ -0.66
PRKDC-210	ENST00000541488	PKDCC	Q504Y2	493 aa		10.92	□□□□□ -0.66
PRKDC-210	ENST00000541488	LCE2A	Q5TA79	106 aa	Predicted RBP	10.92	□□□□□ -0.66
PRKDC-210	ENST00000541488	TREML4	Q6UXN2	200 aa		10.92	□□□□□ -0.66
PRKDC-210	ENST00000541488	TSHZ2	Q9NRE2	1034 aa		10.91	□□□□□ -0.66
PRKDC-210	ENST00000541488	GGCX	P38435	758 aa		10.9	□□□□□ -0.66
PRKDC-210	ENST00000541488	APLP1	P51693	650 aa		10.89	□□□□□ -0.67
PRKDC-210	ENST00000541488	DGAT1	O75907	488 aa		10.88	□□□□□ -0.67
PRKDC-210	ENST00000541488	TSR1	Q2NL82	804 aa	Known RBP	10.87	□□□□□ -0.67
PRKDC-210	ENST00000541488	DDX12P	Q92771	950 aa		10.87	□□□□□ -0.67
PRKDC-210	ENST00000541488	C3orf80	F5H4A9	247 aa		10.85	□□□□□ -0.67
PRKDC-210	ENST00000541488	RNF40	O75150	1001 aa		10.85	□□□□□ -0.67
PRKDC-210	ENST00000541488	TMUB1	Q9BVT8	246 aa		10.85	□□□□□ -0.67
PRKDC-210	ENST00000541488	FAM198A	Q9UFP1	575 aa		10.85	□□□□□ -0.67
PRKDC-210	ENST00000541488	DPYSL4	O14531	572 aa		10.84	□□□□□ -0.67
PRKDC-210	ENST00000541488	EN1	Q05925	392 aa	Predicted RBP	10.84	□□□□□ -0.67
PRKDC-210	ENST00000541488	EMID1	Q96A84	441 aa	Predicted RBP	10.84	□□□□□ -0.67
PRKDC-210	ENST00000541488	WDR70	Q9NW82	654 aa		10.84	□□□□□ -0.67
PRKDC-210	ENST00000541488	MAP3K7	O43318	606 aa		10.83	□□□□□ -0.68
PRKDC-210	ENST00000541488	COPS2	P61201	443 aa		10.83	□□□□□ -0.68
PRKDC-210	ENST00000541488	CDCA7L	Q96GN5	454 aa		10.83	□□□□□ -0.68
PRKDC-210	ENST00000541488	SLC19A1	P41440	591 aa		10.82	□□□□□ -0.68
PRKDC-210	ENST00000541488	PLCB2	Q00722	1185 aa		10.81	□□□□□ -0.68
PRKDC-210	ENST00000541488	PRR20E	P86478	221 aa		10.8	□□□□□ -0.68
PRKDC-210	ENST00000541488	PRR20C	P86479	221 aa		10.8	□□□□□ -0.68
PRKDC-210	ENST00000541488	PRR20D	P86480	221 aa		10.8	□□□□□ -0.68
PRKDC-210	ENST00000541488	PRR20B	P86481	221 aa		10.8	□□□□□ -0.68
PRKDC-210	ENST00000541488	PRR20A	P86496	221 aa		10.8	□□□□□ -0.68
PRKDC-210	ENST00000541488	NBR1	Q14596	966 aa		10.8	□□□□□ -0.68
PRKDC-210	ENST00000541488	FAM187A	A6NFU0	413 aa		10.79	□□□□□ -0.68
PRKDC-210	ENST00000541488	PRSS12	P56730	875 aa		10.79	□□□□□ -0.68
PRKDC-210	ENST00000541488	CAMK2B	Q13554	666 aa		10.79	□□□□□ -0.68
PRKDC-210	ENST00000541488	TATDN2	Q93075	761 aa		10.79	□□□□□ -0.68
PRKDC-210	ENST00000541488	PNMA3	Q9UL41	463 aa		10.79	□□□□□ -0.68
PRKDC-210	ENST00000541488	NBPF26	B4DH59	902 aa		10.78	□□□□□ -0.68
PRKDC-210	ENST00000541488	SPRYD7	Q5W111	196 aa		10.78	□□□□□ -0.68
PRKDC-210	ENST00000541488	RNF223	E7ERA6	249 aa		10.77	□□□□□ -0.69
PRKDC-210	ENST00000541488	ST8SIA5	O15466	376 aa		10.77	□□□□□ -0.69
PRKDC-210	ENST00000541488	E2F4	Q16254	413 aa		10.77	□□□□□ -0.69
PRKDC-210	ENST00000541488	ZPR1	O75312	459 aa		10.76	□□□□□ -0.69
PRKDC-210	ENST00000541488	ZNF598	Q86UK7	904 aa	Known RBP	10.76	□□□□□ -0.69
PRKDC-210	ENST00000541488	HAP1	P54257	671 aa	Predicted RBP	10.75	□□□□□ -0.69
PRKDC-210	ENST00000541488	STK17A	Q9UEE5	414 aa		10.75	□□□□□ -0.69
PRKDC-210	ENST00000541488	AAAS	Q9NRG9	546 aa		10.74	□□□□□ -0.69

Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms