RNA–Protein interactions for RNA: ENST00000538909.1

CBX3P4-201, Transcript of chromobox 3 pseudogene 4, humanhuman

BASIC

Gene CBX3P4, Length 354 nt, Biotype transcribed processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX3P4-201ENST00000538909 ZFRQ96KR1 1074 aaKnown RBP7.04□□□□□ -1.28
CBX3P4-201ENST00000538909 KIAA1468Q9P260 1216 aa7.04□□□□□ -1.28
CBX3P4-201ENST00000538909 PCDHGA10Q9Y5H3 936 aa7.04□□□□□ -1.28
CBX3P4-201ENST00000538909 TRAF7Q6Q0C0 670 aa7.03□□□□□ -1.28
CBX3P4-201ENST00000538909 LAPTM4AQ15012 233 aa7.02□□□□□ -1.29
CBX3P4-201ENST00000538909 LAPTM4BQ86VI4 370 aa7.02□□□□□ -1.29
CBX3P4-201ENST00000538909 LARP6Q9BRS8 491 aaKnown RBP7.02□□□□□ -1.29
CBX3P4-201ENST00000538909 NYAP1Q6ZVC0 841 aa7.01□□□□□ -1.29
CBX3P4-201ENST00000538909 TYW1BQ6NUM6 668 aa7□□□□□ -1.29
CBX3P4-201ENST00000538909 DDX27Q96GQ7 796 aaKnown RBP7□□□□□ -1.29
CBX3P4-201ENST00000538909 HPS5Q9UPZ3 1129 aa7□□□□□ -1.29
CBX3P4-201ENST00000538909 EMILIN3Q9NT22 766 aa6.99□□□□□ -1.29
CBX3P4-201ENST00000538909 RYDENQ9NUL5 291 aaKnown RBP6.99□□□□□ -1.29
CBX3P4-201ENST00000538909 FBXW7Q969H0 707 aa6.98□□□□□ -1.29
CBX3P4-201ENST00000538909 CDKN2AIPQ9NXV6 580 aaPredicted RBP6.98□□□□□ -1.29
CBX3P4-201ENST00000538909 LRCH3Q96II8 777 aa6.97□□□□□ -1.29
CBX3P4-201ENST00000538909 TSR3Q9UJK0 312 aaKnown RBP6.97□□□□□ -1.29
CBX3P4-201ENST00000538909 PHF14O94880 888 aa6.96□□□□□ -1.3
CBX3P4-201ENST00000538909 FAM98CQ17RN3 349 aaKnown RBP6.96□□□□□ -1.3
CBX3P4-201ENST00000538909 PRKD2Q9BZL6 878 aa6.96□□□□□ -1.3
CBX3P4-201ENST00000538909 C6orf132Q5T0Z8 1188 aa6.95□□□□□ -1.3
CBX3P4-201ENST00000538909 RBM33Q96EV2 1170 aaKnown RBP6.95□□□□□ -1.3
CBX3P4-201ENST00000538909 TRIM6-TRIM34B2RNG4 842 aa6.94□□□□□ -1.3
CBX3P4-201ENST00000538909 NRG2O14511 850 aaPredicted RBP6.93□□□□□ -1.3
CBX3P4-201ENST00000538909 MFSD10Q14728 455 aa6.93□□□□□ -1.3
CBX3P4-201ENST00000538909 ONECUT3O60422 494 aaPredicted RBP6.92□□□□□ -1.3
CBX3P4-201ENST00000538909 ZNF787Q6DD87 383 aa6.92□□□□□ -1.3
CBX3P4-201ENST00000538909 DNAJC5Q9H3Z4 198 aa6.92□□□□□ -1.3
CBX3P4-201ENST00000538909 PPP4CP60510 307 aa6.91□□□□□ -1.3
CBX3P4-201ENST00000538909 TJAP1Q5JTD0 557 aa6.9□□□□□ -1.3
CBX3P4-201ENST00000538909 EPAS1Q99814 870 aa6.9□□□□□ -1.3
CBX3P4-201ENST00000538909 GTPBP6O43824 516 aaPredicted RBP6.89□□□□□ -1.31
CBX3P4-201ENST00000538909 PPP1R18Q6NYC8 613 aa6.89□□□□□ -1.31
CBX3P4-201ENST00000538909 DPYSL4O14531 572 aa6.88□□□□□ -1.31
CBX3P4-201ENST00000538909 DDX12PQ92771 950 aa6.88□□□□□ -1.31
CBX3P4-201ENST00000538909 MTRQ99707 1265 aa6.88□□□□□ -1.31
CBX3P4-201ENST00000538909 PDZRN3Q9UPQ7 1066 aa6.88□□□□□ -1.31
CBX3P4-201ENST00000538909 SMAPO00193 183 aa6.87□□□□□ -1.31
CBX3P4-201ENST00000538909 SAMD7Q7Z3H4 446 aa6.87□□□□□ -1.31
CBX3P4-201ENST00000538909 PACS2Q86VP3 889 aa6.87□□□□□ -1.31
CBX3P4-201ENST00000538909 TSKSQ9UJT2 592 aa6.87□□□□□ -1.31
CBX3P4-201ENST00000538909 ZNF516Q92618 1163 aa6.86□□□□□ -1.31
CBX3P4-201ENST00000538909 ZNF775Q96BV0 537 aaPredicted RBP6.86□□□□□ -1.31
CBX3P4-201ENST00000538909 IL21Q9HBE4 155 aa6.86□□□□□ -1.31
CBX3P4-201ENST00000538909 V9GY48 417 aaPredicted RBP6.86□□□□□ -1.31
CBX3P4-201ENST00000538909 TSR1Q2NL82 804 aaKnown RBP6.85□□□□□ -1.31
CBX3P4-201ENST00000538909 CADPS2Q86UW7 1296 aa6.85□□□□□ -1.31
CBX3P4-201ENST00000538909 EIF4ENIF1Q9NRA8 985 aaKnown RBP6.85□□□□□ -1.31
CBX3P4-201ENST00000538909 MAP3K7O43318 606 aa6.84□□□□□ -1.31
CBX3P4-201ENST00000538909 RNF40O75150 1001 aa6.84□□□□□ -1.31
CBX3P4-201ENST00000538909 NBR1Q14596 966 aa6.83□□□□□ -1.32
CBX3P4-201ENST00000538909 NKX2-3Q8TAU0 364 aa6.82□□□□□ -1.32
CBX3P4-201ENST00000538909 EN1Q05925 392 aaPredicted RBP6.81□□□□□ -1.32
CBX3P4-201ENST00000538909 C3orf80F5H4A9 247 aa6.8□□□□□ -1.32
CBX3P4-201ENST00000538909 CDCA7LQ96GN5 454 aa6.8□□□□□ -1.32
CBX3P4-201ENST00000538909 FAM198AQ9UFP1 575 aa6.8□□□□□ -1.32
CBX3P4-201ENST00000538909 APLP1P51693 650 aa6.79□□□□□ -1.32
CBX3P4-201ENST00000538909 CAMK2BQ13554 666 aa6.79□□□□□ -1.32
CBX3P4-201ENST00000538909 PNMA3Q9UL41 463 aa6.79□□□□□ -1.32
CBX3P4-201ENST00000538909 COPS2P61201 443 aa6.78□□□□□ -1.32
CBX3P4-201ENST00000538909 PRSS12P56730 875 aa6.77□□□□□ -1.33
CBX3P4-201ENST00000538909 TATDN2Q93075 761 aa6.77□□□□□ -1.33
CBX3P4-201ENST00000538909 NBPF26B4DH59 902 aa6.76□□□□□ -1.33
CBX3P4-201ENST00000538909 GGCXP38435 758 aa6.76□□□□□ -1.33
CBX3P4-201ENST00000538909 DCAF8L2P0C7V8 631 aa6.75□□□□□ -1.33
CBX3P4-201ENST00000538909 POTECB2RU33 542 aa6.74□□□□□ -1.33
CBX3P4-201ENST00000538909 HDGFP51858 240 aaKnown RBP6.74□□□□□ -1.33
CBX3P4-201ENST00000538909 PKDCCQ504Y2 493 aa6.74□□□□□ -1.33
CBX3P4-201ENST00000538909 NUDT18Q6ZVK8 323 aa6.74□□□□□ -1.33
CBX3P4-201ENST00000538909 PRIM1P49642 420 aaKnown RBP6.73□□□□□ -1.33
CBX3P4-201ENST00000538909 TRIM67Q6ZTA4 783 aa6.73□□□□□ -1.33
CBX3P4-201ENST00000538909 MYT1Q01538 1121 aa6.72□□□□□ -1.33
CBX3P4-201ENST00000538909 SLC19A1P41440 591 aa6.71□□□□□ -1.34
CBX3P4-201ENST00000538909 PDIA6Q15084 440 aa6.71□□□□□ -1.34
CBX3P4-201ENST00000538909 SWT1Q5T5J6 900 aaKnown RBP6.71□□□□□ -1.34
CBX3P4-201ENST00000538909 GRXCR2A6NFK2 248 aa6.7□□□□□ -1.34
CBX3P4-201ENST00000538909 CERKQ8TCT0 537 aa6.7□□□□□ -1.34
CBX3P4-201ENST00000538909 TMUB1Q9BVT8 246 aa6.7□□□□□ -1.34
CBX3P4-201ENST00000538909 CDHR5Q9HBB8 845 aa6.7□□□□□ -1.34
CBX3P4-201ENST00000538909 RNF223E7ERA6 249 aa6.69□□□□□ -1.34
CBX3P4-201ENST00000538909 ZPR1O75312 459 aa6.69□□□□□ -1.34
CBX3P4-201ENST00000538909 FAM187AA6NFU0 413 aa6.68□□□□□ -1.34
CBX3P4-201ENST00000538909 DGAT1O75907 488 aa6.68□□□□□ -1.34
CBX3P4-201ENST00000538909 EMID1Q96A84 441 aaPredicted RBP6.68□□□□□ -1.34
CBX3P4-201ENST00000538909 SPDYE16A6NNV3 312 aaPredicted RBP6.67□□□□□ -1.34
CBX3P4-201ENST00000538909 TLL1O43897 1013 aa6.67□□□□□ -1.34
CBX3P4-201ENST00000538909 SLF2Q8IX21 1173 aa6.67□□□□□ -1.34
CBX3P4-201ENST00000538909 TNFRSF10AO00220 468 aa6.66□□□□□ -1.34
CBX3P4-201ENST00000538909 PPEF1O14829 653 aaPredicted RBP6.66□□□□□ -1.34
CBX3P4-201ENST00000538909 ST8SIA5O15466 376 aa6.66□□□□□ -1.34
CBX3P4-201ENST00000538909 SPRYD7Q5W111 196 aa6.66□□□□□ -1.34
CBX3P4-201ENST00000538909 NECTIN2Q92692 538 aa6.66□□□□□ -1.34
CBX3P4-201ENST00000538909 PCDHB3Q9Y5E6 796 aa6.66□□□□□ -1.34
CBX3P4-201ENST00000538909 ZNF697Q5TEC3 545 aa6.65□□□□□ -1.34
CBX3P4-201ENST00000538909 BLOC1S3Q6QNY0 202 aa6.65□□□□□ -1.34
CBX3P4-201ENST00000538909 TREML4Q6UXN2 200 aa6.65□□□□□ -1.34
CBX3P4-201ENST00000538909 PADI6Q6TGC4 694 aa6.64□□□□□ -1.35
CBX3P4-201ENST00000538909 ZNF598Q86UK7 904 aaKnown RBP6.64□□□□□ -1.35
CBX3P4-201ENST00000538909 LOC100996750A0A140TA64 210 aa6.63□□□□□ -1.35
CBX3P4-201ENST00000538909 SLC4A3P48751 1232 aa6.63□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 80.5 ms