RNA–Protein interactions for RNA: ENST00000493341.1

VPS13A-212, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,001 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-212ENST00000493341 GPCPD1Q9NPB8 672 aa8.13□□□□□ -1.11
VPS13A-212ENST00000493341 OCEL1Q9H607 264 aa8.13□□□□□ -1.11
VPS13A-212ENST00000493341 POLR3EQ9NVU0 708 aa8.13□□□□□ -1.11
VPS13A-212ENST00000493341 GALR2O43603 387 aaPredicted RBP8.12□□□□□ -1.11
VPS13A-212ENST00000493341 PROCA1Q8NCQ7 364 aaPredicted RBP8.12□□□□□ -1.11
VPS13A-212ENST00000493341 CCDC97Q96F63 343 aaPredicted RBP8.12□□□□□ -1.11
VPS13A-212ENST00000493341 BEGAINQ9BUH8 593 aa8.12□□□□□ -1.11
VPS13A-212ENST00000493341 IRX5P78411 483 aaPredicted RBP8.11□□□□□ -1.11
VPS13A-212ENST00000493341 PHOX2BQ99453 314 aa8.11□□□□□ -1.11
VPS13A-212ENST00000493341 CDHR5Q9HBB8 845 aa8.11□□□□□ -1.11
VPS13A-212ENST00000493341 TMUB1Q9BVT8 246 aa8.1□□□□□ -1.11
VPS13A-212ENST00000493341 SERPINA10Q9UK55 444 aa8.1□□□□□ -1.11
VPS13A-212ENST00000493341 C19orf67A6NJJ6 358 aa8.1□□□□□ -1.11
VPS13A-212ENST00000493341 MAP3K7O43318 606 aa8.1□□□□□ -1.11
VPS13A-212ENST00000493341 EVX2Q03828 476 aa8.1□□□□□ -1.11
VPS13A-212ENST00000493341 FNBP4Q8N3X1 1017 aaPredicted RBP8.1□□□□□ -1.11
VPS13A-212ENST00000493341 NPDC1Q9NQX5 325 aaPredicted RBP8.1□□□□□ -1.11
VPS13A-212ENST00000493341 ATN1P54259 1190 aaPredicted RBP8.09□□□□□ -1.11
VPS13A-212ENST00000493341 TMEM92Q6UXU6 159 aa8.09□□□□□ -1.11
VPS13A-212ENST00000493341 AEBP1Q8IUX7 1158 aa8.07□□□□□ -1.12
VPS13A-212ENST00000493341 RBM33Q96EV2 1170 aaKnown RBP8.07□□□□□ -1.12
VPS13A-212ENST00000493341 EN1Q05925 392 aaPredicted RBP8.07□□□□□ -1.12
VPS13A-212ENST00000493341 FAM161AQ3B820 660 aa8.07□□□□□ -1.12
VPS13A-212ENST00000493341 KCTD17Q8N5Z5 321 aa8.07□□□□□ -1.12
VPS13A-212ENST00000493341 NLRP7Q8WX94 980 aa8.07□□□□□ -1.12
VPS13A-212ENST00000493341 PLCG2P16885 1265 aa8.05□□□□□ -1.12
VPS13A-212ENST00000493341 L3MBTL3Q96JM7 780 aaPredicted RBP8.05□□□□□ -1.12
VPS13A-212ENST00000493341 SPDYE5A6NIY4 337 aa8.05□□□□□ -1.12
VPS13A-212ENST00000493341 TRAIPQ9BWF2 469 aa8.05□□□□□ -1.12
VPS13A-212ENST00000493341 FAM217BQ9NTX9 383 aaPredicted RBP8.05□□□□□ -1.12
VPS13A-212ENST00000493341 COG6Q9Y2V7 657 aa8.05□□□□□ -1.12
VPS13A-212ENST00000493341 TSR1Q2NL82 804 aaKnown RBP8.04□□□□□ -1.12
VPS13A-212ENST00000493341 MYSM1Q5VVJ2 828 aa8.04□□□□□ -1.12
VPS13A-212ENST00000493341 GNL3Q9BVP2 549 aaKnown RBP eCLIP8.04□□□□□ -1.12
VPS13A-212ENST00000493341 ZNF330Q9Y3S2 320 aaPredicted RBP8.04□□□□□ -1.12
VPS13A-212ENST00000493341 IER5LQ5T953 404 aa8.03□□□□□ -1.12
VPS13A-212ENST00000493341 PHF14O94880 888 aa8.03□□□□□ -1.12
VPS13A-212ENST00000493341 METTL3Q86U44 580 aaKnown RBP8.03□□□□□ -1.12
VPS13A-212ENST00000493341 PTCD2Q8WV60 388 aaKnown RBP8.03□□□□□ -1.12
VPS13A-212ENST00000493341 EPAS1Q99814 870 aa8.03□□□□□ -1.12
VPS13A-212ENST00000493341 ANO8Q9HCE9 1232 aaPredicted RBP8.03□□□□□ -1.12
VPS13A-212ENST00000493341 SNRKQ9NRH2 765 aa8.03□□□□□ -1.12
VPS13A-212ENST00000493341 PLSCR2Q9NRY7 297 aa8.03□□□□□ -1.12
VPS13A-212ENST00000493341 CLK2P49760 499 aaKnown RBP8.02□□□□□ -1.13
VPS13A-212ENST00000493341 ATMINO43313 823 aaPredicted RBP8.01□□□□□ -1.13
VPS13A-212ENST00000493341 OATP04181 439 aa8.01□□□□□ -1.13
VPS13A-212ENST00000493341 RFC5P40937 340 aa8□□□□□ -1.13
VPS13A-212ENST00000493341 SLAIN1Q8ND83 568 aa8□□□□□ -1.13
VPS13A-212ENST00000493341 PCDHGA10Q9Y5H3 936 aa8□□□□□ -1.13
VPS13A-212ENST00000493341 RETREG2Q8NC44 543 aa8□□□□□ -1.13
VPS13A-212ENST00000493341 TBC1D2Q9BYX2 928 aa7.99□□□□□ -1.13
VPS13A-212ENST00000493341 BANK1Q8NDB2 785 aa7.98□□□□□ -1.13
VPS13A-212ENST00000493341 ASTLQ6HA08 431 aaPredicted RBP7.98□□□□□ -1.13
VPS13A-212ENST00000493341 SEC24BO95487 1268 aa7.97□□□□□ -1.13
VPS13A-212ENST00000493341 PXYLP1Q8TE99 480 aa7.97□□□□□ -1.13
VPS13A-212ENST00000493341 GDPD2Q9HCC8 539 aa7.97□□□□□ -1.13
VPS13A-212ENST00000493341 FBXO31Q5XUX0 539 aaPredicted RBP7.96□□□□□ -1.13
VPS13A-212ENST00000493341 TYW1BQ6NUM6 668 aa7.96□□□□□ -1.13
VPS13A-212ENST00000493341 PADI6Q6TGC4 694 aa7.96□□□□□ -1.13
VPS13A-212ENST00000493341 DIXDC1Q155Q3 683 aa7.96□□□□□ -1.14
VPS13A-212ENST00000493341 TMEM259Q4ZIN3 620 aa7.96□□□□□ -1.14
VPS13A-212ENST00000493341 CALR3Q96L12 384 aaKnown RBP7.95□□□□□ -1.14
VPS13A-212ENST00000493341 LIMD1Q9UGP4 676 aa7.95□□□□□ -1.14
VPS13A-212ENST00000493341 ADGRG1Q9Y653 693 aa7.95□□□□□ -1.14
VPS13A-212ENST00000493341 GABBR2O75899 941 aa7.94□□□□□ -1.14
VPS13A-212ENST00000493341 SLC34A2O95436 690 aa7.94□□□□□ -1.14
VPS13A-212ENST00000493341 WWC1Q8IX03 1113 aa7.94□□□□□ -1.14
VPS13A-212ENST00000493341 IRF5Q13568 498 aa7.93□□□□□ -1.14
VPS13A-212ENST00000493341 FBXW7Q969H0 707 aa7.93□□□□□ -1.14
VPS13A-212ENST00000493341 ACIN1Q9UKV3 1341 aaKnown RBP7.93□□□□□ -1.14
VPS13A-212ENST00000493341 ABL2P42684 1182 aa7.93□□□□□ -1.14
VPS13A-212ENST00000493341 CLCN6P51797 869 aa7.93□□□□□ -1.14
VPS13A-212ENST00000493341 TMCO4Q5TGY1 634 aa7.93□□□□□ -1.14
VPS13A-212ENST00000493341 RIC3Q7Z5B4 369 aa7.93□□□□□ -1.14
VPS13A-212ENST00000493341 MTMR14Q8NCE2 650 aa7.93□□□□□ -1.14
VPS13A-212ENST00000493341 CERKQ8TCT0 537 aa7.93□□□□□ -1.14
VPS13A-212ENST00000493341 GZF1Q9H116 711 aaPredicted RBP7.93□□□□□ -1.14
VPS13A-212ENST00000493341 COLQQ9Y215 455 aaPredicted RBP7.93□□□□□ -1.14
VPS13A-212ENST00000493341 CSPP1Q1MSJ5 1256 aa7.92□□□□□ -1.14
VPS13A-212ENST00000493341 PPP2R2DQ66LE6 453 aa7.91□□□□□ -1.14
VPS13A-212ENST00000493341 C3orf67Q6ZVT6 689 aa7.91□□□□□ -1.14
VPS13A-212ENST00000493341 C6orf132Q5T0Z8 1188 aa7.91□□□□□ -1.14
VPS13A-212ENST00000493341 PPP1R15AO75807 674 aaPredicted RBP7.9□□□□□ -1.14
VPS13A-212ENST00000493341 SPIRE2Q8WWL2 714 aa7.9□□□□□ -1.14
VPS13A-212ENST00000493341 GLMNQ92990 594 aa7.9□□□□□ -1.14
VPS13A-212ENST00000493341 PRM3Q9NNZ6 103 aa7.9□□□□□ -1.14
VPS13A-212ENST00000493341 JPH4Q96JJ6 628 aa7.9□□□□□ -1.15
VPS13A-212ENST00000493341 POM121CA8CG34 1229 aa7.89□□□□□ -1.15
VPS13A-212ENST00000493341 RBM46Q8TBY0 533 aaKnown RBP7.89□□□□□ -1.15
VPS13A-212ENST00000493341 MTMR7Q9Y216 660 aa7.89□□□□□ -1.15
VPS13A-212ENST00000493341 TBC1D2BQ9UPU7 963 aa7.88□□□□□ -1.15
VPS13A-212ENST00000493341 PCDHGA4Q9Y5G9 962 aa7.88□□□□□ -1.15
VPS13A-212ENST00000493341 AP1G2O75843 785 aa7.88□□□□□ -1.15
VPS13A-212ENST00000493341 RGS22Q8NE09 1264 aa7.88□□□□□ -1.15
VPS13A-212ENST00000493341 MFAP1P55081 439 aaKnown RBP7.87□□□□□ -1.15
VPS13A-212ENST00000493341 NUTM1Q86Y26 1132 aa7.87□□□□□ -1.15
VPS13A-212ENST00000493341 QPCTQ16769 361 aa7.86□□□□□ -1.15
VPS13A-212ENST00000493341 RBM27Q9P2N5 1060 aaKnown RBP7.86□□□□□ -1.15
VPS13A-212ENST00000493341 FOSBP53539 338 aa7.86□□□□□ -1.15
VPS13A-212ENST00000493341 ZNF454Q8N9F8 522 aa7.86□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms