RNA–Protein interactions for RNA: ENST00000489862.1

DEPDC1-204, Transcript of DEP domain containing 1, humanhuman

TSL 1 (best)

Gene DEPDC1, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC1-204ENST00000489862 CDKN2AIPQ9NXV6 580 aaPredicted RBP8.92□□□□□ -0.98
DEPDC1-204ENST00000489862 HPS5Q9UPZ3 1129 aa8.92□□□□□ -0.98
DEPDC1-204ENST00000489862 ANO8Q9HCE9 1232 aaPredicted RBP8.91□□□□□ -0.98
DEPDC1-204ENST00000489862 PROX2Q3B8N5 592 aa8.91□□□□□ -0.98
DEPDC1-204ENST00000489862 LRCH3Q96II8 777 aa8.91□□□□□ -0.98
DEPDC1-204ENST00000489862 ONECUT3O60422 494 aaPredicted RBP8.9□□□□□ -0.99
DEPDC1-204ENST00000489862 PPP1R18Q6NYC8 613 aa8.9□□□□□ -0.99
DEPDC1-204ENST00000489862 EIF4ENIF1Q9NRA8 985 aaKnown RBP8.9□□□□□ -0.99
DEPDC1-204ENST00000489862 PKDCCQ504Y2 493 aa8.88□□□□□ -0.99
DEPDC1-204ENST00000489862 KIAA1468Q9P260 1216 aa8.87□□□□□ -0.99
DEPDC1-204ENST00000489862 DGAT1O75907 488 aa8.87□□□□□ -0.99
DEPDC1-204ENST00000489862 LCE2AQ5TA79 106 aaPredicted RBP8.86□□□□□ -0.99
DEPDC1-204ENST00000489862 INSM1Q01101 510 aaPredicted RBP8.85□□□□□ -0.99
DEPDC1-204ENST00000489862 FAM98CQ17RN3 349 aaKnown RBP8.85□□□□□ -0.99
DEPDC1-204ENST00000489862 IL21Q9HBE4 155 aa8.85□□□□□ -0.99
DEPDC1-204ENST00000489862 EVI5O60447 810 aa8.84□□□□□ -0.99
DEPDC1-204ENST00000489862 GGCXP38435 758 aa8.84□□□□□ -0.99
DEPDC1-204ENST00000489862 TJAP1Q5JTD0 557 aa8.84□□□□□ -0.99
DEPDC1-204ENST00000489862 PPP4CP60510 307 aa8.83□□□□□ -1
DEPDC1-204ENST00000489862 MYT1Q01538 1121 aa8.83□□□□□ -1
DEPDC1-204ENST00000489862 SEPT9Q9UHD8 586 aaPredicted RBP8.82□□□□□ -1
DEPDC1-204ENST00000489862 COL9A1P20849 921 aa8.81□□□□□ -1
DEPDC1-204ENST00000489862 POTECB2RU33 542 aa8.8□□□□□ -1
DEPDC1-204ENST00000489862 FBXW7Q969H0 707 aa8.8□□□□□ -1
DEPDC1-204ENST00000489862 WFS1O76024 890 aa8.79□□□□□ -1
DEPDC1-204ENST00000489862 MTRQ99707 1265 aa8.78□□□□□ -1
DEPDC1-204ENST00000489862 PPP1R15BQ5SWA1 713 aa8.76□□□□□ -1.01
DEPDC1-204ENST00000489862 TYW1BQ6NUM6 668 aa8.75□□□□□ -1.01
DEPDC1-204ENST00000489862 WIPF1O43516 503 aa8.74□□□□□ -1.01
DEPDC1-204ENST00000489862 TMUB1Q9BVT8 246 aa8.74□□□□□ -1.01
DEPDC1-204ENST00000489862 PCDHGA10Q9Y5H3 936 aa8.74□□□□□ -1.01
DEPDC1-204ENST00000489862 TRIM6-TRIM34B2RNG4 842 aa8.73□□□□□ -1.01
DEPDC1-204ENST00000489862 MAP3K9P80192 1104 aa8.72□□□□□ -1.01
DEPDC1-204ENST00000489862 PRR20EP86478 221 aa8.71□□□□□ -1.02
DEPDC1-204ENST00000489862 PRR20CP86479 221 aa8.71□□□□□ -1.02
DEPDC1-204ENST00000489862 PRR20DP86480 221 aa8.71□□□□□ -1.02
DEPDC1-204ENST00000489862 PRR20BP86481 221 aa8.71□□□□□ -1.02
DEPDC1-204ENST00000489862 PRR20AP86496 221 aa8.71□□□□□ -1.02
DEPDC1-204ENST00000489862 FAM181BA6NEQ2 426 aa8.7□□□□□ -1.02
DEPDC1-204ENST00000489862 TRIM67Q6ZTA4 783 aa8.7□□□□□ -1.02
DEPDC1-204ENST00000489862 PHF14O94880 888 aa8.69□□□□□ -1.02
DEPDC1-204ENST00000489862 FAM187AA6NFU0 413 aa8.69□□□□□ -1.02
DEPDC1-204ENST00000489862 ZNF516Q92618 1163 aa8.69□□□□□ -1.02
DEPDC1-204ENST00000489862 SLC19A1P41440 591 aa8.68□□□□□ -1.02
DEPDC1-204ENST00000489862 CRISPLD2Q9H0B8 497 aa8.68□□□□□ -1.02
DEPDC1-204ENST00000489862 PACS2Q86VP3 889 aa8.67□□□□□ -1.02
DEPDC1-204ENST00000489862 ECM2O94769 699 aaPredicted RBP8.66□□□□□ -1.02
DEPDC1-204ENST00000489862 C6orf132Q5T0Z8 1188 aa8.65□□□□□ -1.02
DEPDC1-204ENST00000489862 PDE4AP27815 886 aa8.65□□□□□ -1.03
DEPDC1-204ENST00000489862 ZNF598Q86UK7 904 aaKnown RBP8.64□□□□□ -1.03
DEPDC1-204ENST00000489862 AAASQ9NRG9 546 aa8.64□□□□□ -1.03
DEPDC1-204ENST00000489862 EPAS1Q99814 870 aa8.63□□□□□ -1.03
DEPDC1-204ENST00000489862 NKX2-3Q8TAU0 364 aa8.62□□□□□ -1.03
DEPDC1-204ENST00000489862 NFX1Q12986 1120 aaKnown RBP8.62□□□□□ -1.03
DEPDC1-204ENST00000489862 SUZ12Q15022 739 aaKnown RBP8.62□□□□□ -1.03
DEPDC1-204ENST00000489862 SPRYD7Q5W111 196 aa8.62□□□□□ -1.03
DEPDC1-204ENST00000489862 NECTIN2Q92692 538 aa8.62□□□□□ -1.03
DEPDC1-204ENST00000489862 SAMD7Q7Z3H4 446 aa8.61□□□□□ -1.03
DEPDC1-204ENST00000489862 ST8SIA5O15466 376 aa8.6□□□□□ -1.03
DEPDC1-204ENST00000489862 C11orf95C9JLR9 678 aaPredicted RBP8.58□□□□□ -1.04
DEPDC1-204ENST00000489862 HDGFP51858 240 aaKnown RBP8.58□□□□□ -1.04
DEPDC1-204ENST00000489862 ZNF697Q5TEC3 545 aa8.57□□□□□ -1.04
DEPDC1-204ENST00000489862 CRIPAKQ8N1N5 446 aa8.54□□□□□ -1.04
DEPDC1-204ENST00000489862 RYDENQ9NUL5 291 aaKnown RBP8.54□□□□□ -1.04
DEPDC1-204ENST00000489862 APLP1P51693 650 aa8.54□□□□□ -1.04
DEPDC1-204ENST00000489862 RNF223E7ERA6 249 aa8.53□□□□□ -1.04
DEPDC1-204ENST00000489862 TNFRSF10AO00220 468 aa8.53□□□□□ -1.04
DEPDC1-204ENST00000489862 RGL2O15211 777 aa8.53□□□□□ -1.04
DEPDC1-204ENST00000489862 GDF9O60383 454 aa8.53□□□□□ -1.04
DEPDC1-204ENST00000489862 COPS2P61201 443 aa8.53□□□□□ -1.04
DEPDC1-204ENST00000489862 RNF40O75150 1001 aa8.52□□□□□ -1.05
DEPDC1-204ENST00000489862 PKD2Q13563 968 aa8.52□□□□□ -1.05
DEPDC1-204ENST00000489862 DDX27Q96GQ7 796 aaKnown RBP8.52□□□□□ -1.05
DEPDC1-204ENST00000489862 TSKSQ9UJT2 592 aa8.52□□□□□ -1.05
DEPDC1-204ENST00000489862 ZPR1O75312 459 aa8.51□□□□□ -1.05
DEPDC1-204ENST00000489862 ANKLE1Q8NAG6 615 aa8.51□□□□□ -1.05
DEPDC1-204ENST00000489862 GMPR2Q9P2T1 348 aaKnown RBP8.51□□□□□ -1.05
DEPDC1-204ENST00000489862 RBM33Q96EV2 1170 aaKnown RBP8.5□□□□□ -1.05
DEPDC1-204ENST00000489862 NCKAP5LQ9HCH0 1330 aa8.49□□□□□ -1.05
DEPDC1-204ENST00000489862 EMID1Q96A84 441 aaPredicted RBP8.49□□□□□ -1.05
DEPDC1-204ENST00000489862 TERTO14746 1132 aaKnown RBP8.48□□□□□ -1.05
DEPDC1-204ENST00000489862 AXIN1O15169 862 aa8.48□□□□□ -1.05
DEPDC1-204ENST00000489862 LMOD2Q6P5Q4 547 aa8.48□□□□□ -1.05
DEPDC1-204ENST00000489862 LARP6Q9BRS8 491 aaKnown RBP8.48□□□□□ -1.05
DEPDC1-204ENST00000489862 CTC1Q2NKJ3 1217 aa8.47□□□□□ -1.05
DEPDC1-204ENST00000489862 NBPF26B4DH59 902 aa8.47□□□□□ -1.05
DEPDC1-204ENST00000489862 SMAPO00193 183 aa8.46□□□□□ -1.06
DEPDC1-204ENST00000489862 PRR14Q9BWN1 585 aa8.46□□□□□ -1.06
DEPDC1-204ENST00000489862 EMILIN3Q9NT22 766 aa8.46□□□□□ -1.06
DEPDC1-204ENST00000489862 LIAT1Q6ZQX7 453 aa8.45□□□□□ -1.06
DEPDC1-204ENST00000489862 DACH1Q9UI36 760 aa8.45□□□□□ -1.06
DEPDC1-204ENST00000489862 AVPP01185 164 aa8.44□□□□□ -1.06
DEPDC1-204ENST00000489862 SLC4A3P48751 1232 aa8.44□□□□□ -1.06
DEPDC1-204ENST00000489862 HS6ST3Q8IZP7 471 aa8.44□□□□□ -1.06
DEPDC1-204ENST00000489862 ZSCAN1Q8NBB4 408 aa8.43□□□□□ -1.06
DEPDC1-204ENST00000489862 TATDN2Q93075 761 aa8.43□□□□□ -1.06
DEPDC1-204ENST00000489862 PNMA3Q9UL41 463 aa8.43□□□□□ -1.06
DEPDC1-204ENST00000489862 MFSD10Q14728 455 aa8.42□□□□□ -1.06
DEPDC1-204ENST00000489862 SLF2Q8IX21 1173 aa8.42□□□□□ -1.06
DEPDC1-204ENST00000489862 CDCA7LQ96GN5 454 aa8.42□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms